CU160114 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU160114
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 28819 .. 29025 (-)
Sequence length	208

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGGGCGGTAACCGTGATCGTCACTCCAGGAGGAGCATTGATGGTCGCATTGTAGACAGAGATAGGATGGCCGACGTTTGTGACTCGTCGTCGGAACGTTGTTGTCATCGGTTGGTTGGTGCTTTTGAGACTGAGCTGAAAAGTTGGATAATTGAGTGAGTCGTGTCCTTGGCCGGGGATTAGATTGGAACAGTTTTATGGATTTGGTT

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU160114 vs. Swiss-Prot
Match: SBT4E_ARATH (Subtilisin-like protease SBT4.14 OS=Arabidopsis thaliana GN=SBT4.14 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.2e-16
Identity = 39/62 (62.90%), Postives = 44/62 (70.97%), Query Frame = -3


Query: 9   NCSNLIPGQGHDSLNYPTFQLSLKSTNQPMTTTFRRRVTNVGHPISVYNATINAPPGVTI 68
           +CS+++PG GHDSLNYPT QL+L+S        FRRRVTNVG P SVY AT+ AP GV I
Sbjct: 632 SCSSIVPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEI 691

Query: 69  TV 128
           TV
Sbjct: 692 TV 693

Query: 129  188
           
Sbjct: 752  693

Query: 189  195
           
Sbjct: 812  693

[Close]

BLAST of CU160114 vs. TrEMBL
Match: A0A0A0KME6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G000010 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 8.7e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = -3


Query: 6   NCSNLIPGQGHDSLNYPTFQLSLKSTNQPMTTTFRRRVTNVGHPISVYNATINAPPGVTI 65
           NCSNLIPGQGHDSLNYPTFQLSLKSTNQPMTTTFRRRVTNVGHPISVYNATINAPPGVTI
Sbjct: 629 NCSNLIPGQGHDSLNYPTFQLSLKSTNQPMTTTFRRRVTNVGHPISVYNATINAPPGVTI 688

Query: 66  TVT 125
           TVT
Sbjct: 689 TVT 691

Query: 126  185
           
Sbjct: 749  691

Query: 186  195
           
Sbjct: 809  691

[Close]

BLAST of CU160114 vs. TrEMBL
Match: D7U7Q0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g01210 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.4e-17
Identity = 46/63 (73.02%), Postives = 50/63 (79.37%), Query Frame = -3


Query: 6   NCSNLIPGQGHDSLNYPTFQLSLKSTNQPMTTTFRRRVTNVGHPISVYNATINAPPGVTI 65
           NCS+L+PGQG D+LNYPT QLSLK TN+P    FRRRVTNVG   SVYNATI AP GV I
Sbjct: 622 NCSSLLPGQGSDALNYPTMQLSLKDTNEPTVGVFRRRVTNVGPAQSVYNATIKAPQGVEI 681

Query: 66  TVT 125
           TVT
Sbjct: 682 TVT 684

Query: 126  185
           
Sbjct: 742  684

Query: 186  195
           
Sbjct: 802  684

[Close]

BLAST of CU160114 vs. TrEMBL
Match: V4MYM6_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10028458mg PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.5e-15
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = -3


Query: 9   NCSNLIPGQGHDSLNYPTFQLSLKSTNQPMTTTFRRRVTNVGHPISVYNATINAPPGVTI 68
           NCS+++PG GHDSLNYPT QL+L+S        FRRRVTNVG P SVYNAT+ AP GV I
Sbjct: 634 NCSSIVPGLGHDSLNYPTIQLTLRSAKTSTMAVFRRRVTNVGAPSSVYNATVRAPKGVEI 693

Query: 69  TV 128
           TV
Sbjct: 694 TV 695

Query: 129  188
           
Sbjct: 754  695

Query: 189  195
           
Sbjct: 814  695

[Close]

BLAST of CU160114 vs. TrEMBL
Match: M4F8B4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.2e-15
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = -3


Query: 9   NCSNLIPGQGHDSLNYPTFQLSLKSTNQPMTTTFRRRVTNVGHPISVYNATINAPPGVTI 68
           NCS+++PG GHDSLNYPT QL+L+S        FRRRVTNVG P SVYNAT+ AP GV I
Sbjct: 639 NCSSIVPGIGHDSLNYPTIQLTLRSAKASTMAVFRRRVTNVGPPSSVYNATVRAPKGVEI 698

Query: 69  TV 128
           TV
Sbjct: 699 TV 700

Query: 129  188
           
Sbjct: 759  700

Query: 189  195
           
Sbjct: 819  700

[Close]

BLAST of CU160114 vs. TrEMBL
Match: A0A067HDF0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004503mg PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.2e-15
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = -3


Query: 9   NCSNLIPGQGHDSLNYPTFQLSLKSTNQPMTTTFRRRVTNVGHPISVYNATINAPPGVTI 68
           NC++LIPG G+D+LNYPT Q+SLKS  +  T  FRRRVTNVG  +S+YNATI AP GV I
Sbjct: 632 NCTSLIPGVGYDALNYPTMQVSLKSNGELTTAIFRRRVTNVGPRLSIYNATIKAPKGVNI 691

Query: 69  TV 128
           TV
Sbjct: 692 TV 693

Query: 129  188
           
Sbjct: 752  693

Query: 189  195
           
Sbjct: 812  693

[Close]

BLAST of CU160114 vs. NCBI nr
Match: gi|778697899|ref|XP_011654432.1| (PREDICTED: subtilisin-like protease SBT4.14 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 6.2e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = -3


Query: 6   NCSNLIPGQGHDSLNYPTFQLSLKSTNQPMTTTFRRRVTNVGHPISVYNATINAPPGVTI 65
           NCSNLIPGQGHDSLNYPTFQLSLKSTNQPMTTTFRRRVTNVGHPISVYNATINAPPGVTI
Sbjct: 629 NCSNLIPGQGHDSLNYPTFQLSLKSTNQPMTTTFRRRVTNVGHPISVYNATINAPPGVTI 688

Query: 66  TVT 125
           TVT
Sbjct: 689 TVT 691

Query: 126  185
           
Sbjct: 749  691

Query: 186  195
           
Sbjct: 809  691

[Close]

BLAST of CU160114 vs. NCBI nr
Match: gi|659109517|ref|XP_008454753.1| (PREDICTED: xylem serine proteinase 1-like [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-22
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = -3


Query: 6   NCSNLIPGQGHDSLNYPTFQLSLKSTNQPMTTTFRRRVTNVGHPISVYNATINAPPGVTI 65
           NCS LIPG GHDSLNYPTFQLSL+ST QPMTTTFRR+VTNVG P+SVYNATI APPGV I
Sbjct: 632 NCSTLIPGHGHDSLNYPTFQLSLRSTKQPMTTTFRRQVTNVGQPVSVYNATIKAPPGVKI 691

Query: 66  TVT 125
           TVT
Sbjct: 692 TVT 694

Query: 126  185
           
Sbjct: 752  694

Query: 186  195
           
Sbjct: 812  694

[Close]

BLAST of CU160114 vs. NCBI nr
Match: gi|778730647|ref|XP_004140478.2| (PREDICTED: subtilisin-like protease SBT4.14 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 3.8e-17
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = -3


Query: 9   NCSNLIPGQGHDSLNYPTFQLSLKSTNQPMTTTFRRRVTNVGHPISVYNATINAPPGVTI 68
           NC+ +IPG+G+DSLNYPTFQLSL+S+ +P T  F R VTNVG P+SVYNAT+ APPGV I
Sbjct: 594 NCATIIPGEGYDSLNYPTFQLSLQSSREPTTAVFWREVTNVGKPVSVYNATVRAPPGVEI 653

Query: 69  TV 128
           TV
Sbjct: 654 TV 655

Query: 129  188
           
Sbjct: 714  655

Query: 189  195
           
Sbjct: 774  655

[Close]

BLAST of CU160114 vs. NCBI nr
Match: gi|225453849|ref|XP_002272598.1| (PREDICTED: xylem serine proteinase 1 [Vitis vinifera])

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-16
Identity = 46/63 (73.02%), Postives = 50/63 (79.37%), Query Frame = -3


Query: 6   NCSNLIPGQGHDSLNYPTFQLSLKSTNQPMTTTFRRRVTNVGHPISVYNATINAPPGVTI 65
           NCS+L+PGQG D+LNYPT QLSLK TN+P    FRRRVTNVG   SVYNATI AP GV I
Sbjct: 622 NCSSLLPGQGSDALNYPTMQLSLKDTNEPTVGVFRRRVTNVGPAQSVYNATIKAPQGVEI 681

Query: 66  TVT 125
           TVT
Sbjct: 682 TVT 684

Query: 126  185
           
Sbjct: 742  684

Query: 186  195
           
Sbjct: 802  684

[Close]

BLAST of CU160114 vs. NCBI nr
Match: gi|659109757|ref|XP_008454861.1| (PREDICTED: xylem serine proteinase 1-like [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 43/62 (69.35%), Postives = 49/62 (79.03%), Query Frame = -3


Query: 9   NCSNLIPGQGHDSLNYPTFQLSLKSTNQPMTTTFRRRVTNVGHPISVYNATINAPPGVTI 68
           NC+ +I GQG+DSLNYPTFQL L+ST QP T  F R VTNVG P+SVYN T+ APPGV I
Sbjct: 661 NCATIIRGQGYDSLNYPTFQLRLQSTRQPTTAVFWREVTNVGTPVSVYNTTVWAPPGVEI 720

Query: 69  TV 128
           TV
Sbjct: 721 TV 722

Query: 129  188
           
Sbjct: 781  722

Query: 189  195
           
Sbjct: 841  722

The following BLAST results are available for this feature:

BLAST of CU160114 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SBT4E_ARATH	4.2e-16	62.90	Subtilisin-like protease SBT4.14 OS=Arabidopsis thaliana GN=SBT4.14 PE=2 SV=1	[more]

BLAST of CU160114 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KME6_CUCSA	8.7e-29	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G000010 PE=4 SV=1	[more]
D7U7Q0_VITVI	3.4e-17	73.02	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g01210 PE=4 SV=...	[more]
V4MYM6_EUTSA	2.5e-15	66.13	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10028458mg PE=3 SV=1	[more]
M4F8B4_BRARP	3.2e-15	66.13	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1	[more]
A0A067HDF0_CITSI	7.2e-15	66.13	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004503mg PE=4 SV=1	[more]

BLAST of CU160114 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778697899\|ref\|XP_011654432.1\|	6.2e-28	100.00	PREDICTED: subtilisin-like protease SBT4.14 [Cucumis sativus]	[more]
gi\|659109517\|ref\|XP_008454753.1\|	1.0e-22	85.71	PREDICTED: xylem serine proteinase 1-like [Cucumis melo]	[more]
gi\|778730647\|ref\|XP_004140478.2\|	3.8e-17	69.35	PREDICTED: subtilisin-like protease SBT4.14 [Cucumis sativus]	[more]
gi\|225453849\|ref\|XP_002272598.1\|	2.5e-16	73.02	PREDICTED: xylem serine proteinase 1 [Vitis vinifera]	[more]
gi\|659109757\|ref\|XP_008454861.1\|	1.2e-15	69.35	PREDICTED: xylem serine proteinase 1-like [Cucumis melo]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa5G000010	Csa5G000010	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0035377	H0035377	EST