CU157567 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU157567
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Alpha/beta-Hydrolases superfamily protein
Location	Chr2 : 16985981 .. 16986195 (+)
Sequence length	215

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTATTTGATCAGCTGTGGGGGTTTATTTTGTCCAGCGAGACCGGAGAATGACGACCCATGGGTGAATCCAGTGGCAGAAGGAGCAGGGAGGCTGGCGGGGCTGGGGAGTGGGAGGGTGCTAGTTTGTGTGGCGGAGAAAGATGTGCTGAGGGACAGAGGAAGGCTTTACTTTGAGGCGTTGGGGGCAGTGGGTGGTTCGGGGTGGCGGAGATTGG

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU157567 vs. TrEMBL
Match: A0A0A0LLA8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360060 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-12
Identity = 39/62 (62.90%), Postives = 39/62 (62.90%), Query Frame = 2


Query: 20  GLFCPARPENDDPWVNPXXXXXXXXXXXXXXXXXXCVAEKDVLRDRGRLYFEALGAVGGS 79
           G  CPARPENDDPWVNP                  CVAEKDVLRDRGRLYFEAL   GGS
Sbjct: 221 GFICPARPENDDPWVNPVAEGAGRLAGLGSGRVLVCVAEKDVLRDRGRLYFEAL---GGS 279

Query: 80  GW 139
           GW
Sbjct: 281 GW 279

Query: 140  199
           
Sbjct: 341  279

Query: 200  206
           
Sbjct: 401  279

[Close]

BLAST of CU157567 vs. TrEMBL
Match: A0A059BK51_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_F00245 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-08
Identity = 29/58 (50.00%), Postives = 35/58 (60.34%), Query Frame = 2


Query: 29  CPARPENDDPWVNPXXXXXXXXXXXXXXXXXXCVAEKDVLRDRGRLYFEALGAVGGSG 88
           CP++P+ND+PWVNP                  CVAEKD+LRDRGRLY E LG  G +G
Sbjct: 218 CPSKPDNDEPWVNPMADGAPSLAGLGCRMVLMCVAEKDILRDRGRLYHEVLGRSGWTG 275

Query: 89   148
           
Sbjct: 278  275

Query: 149  203
           
Sbjct: 338  275

[Close]

BLAST of CU157567 vs. TrEMBL
Match: A0A059BJS7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00244 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-07
Identity = 29/59 (49.15%), Postives = 35/59 (59.32%), Query Frame = 2


Query: 29  CPARPENDDPWVNPXXXXXXXXXXXXXXXXXXCVAEKDVLRDRGRLYFEALGAVGGSGW 88
           CP+ P++D+PW+NP                  CVAEKD+LRDRGRLY E L   GGSGW
Sbjct: 238 CPSTPDSDEPWINPMADGAPRLAGLGCRRVLVCVAEKDLLRDRGRLYREVL---GGSGW 293

Query: 89   148
           
Sbjct: 298  293

Query: 149  206
           
Sbjct: 358  293

[Close]

BLAST of CU157567 vs. TrEMBL
Match: M1B8Z9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015446 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-06
Identity = 29/59 (49.15%), Postives = 33/59 (55.93%), Query Frame = 2


Query: 29  CPARPENDDPWVNPXXXXXXXXXXXXXXXXXXCVAEKDVLRDRGRLYFEALGAVGGSGW 88
           CP+ P NDDP VNP                  CVAEKD+L+DRGR Y+EALG    SGW
Sbjct: 224 CPSNPNNDDPRVNPIAKGAPGLMSLGCRRVLICVAEKDILKDRGRAYYEALGR---SGW 279

Query: 89   148
           
Sbjct: 284  279

Query: 149  206
           
Sbjct: 344  279

[Close]

BLAST of CU157567 vs. TrEMBL
Match: A0A0D2SE85_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G103600 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.4e-06
Identity = 30/59 (50.85%), Postives = 33/59 (55.93%), Query Frame = 2


Query: 29  CPARPENDDPWVNPXXXXXXXXXXXXXXXXXXCVAEKDVLRDRGRLYFEALGAVGGSGW 88
           CPA P+N+DP VNP                  CVAEKDVLRDRG  Y+EALG    SGW
Sbjct: 158 CPANPDNNDPRVNPVSTDGPSLVGLGCRRVLVCVAEKDVLRDRGWRYYEALGR---SGW 213

Query: 89   148
           
Sbjct: 218  213

Query: 149  206
           
Sbjct: 278  213

[Close]

BLAST of CU157567 vs. NCBI nr
Match: gi|778671161|ref|XP_011649590.1| (PREDICTED: probable carboxylesterase 2 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-12
Identity = 39/62 (62.90%), Postives = 39/62 (62.90%), Query Frame = 2


Query: 20  GLFCPARPENDDPWVNPXXXXXXXXXXXXXXXXXXCVAEKDVLRDRGRLYFEALGAVGGS 79
           G  CPARPENDDPWVNP                  CVAEKDVLRDRGRLYFEAL   GGS
Sbjct: 221 GFICPARPENDDPWVNPVAEGAGRLAGLGSGRVLVCVAEKDVLRDRGRLYFEAL---GGS 279

Query: 80  GW 139
           GW
Sbjct: 281 GW 279

Query: 140  199
           
Sbjct: 341  279

Query: 200  206
           
Sbjct: 401  279

[Close]

BLAST of CU157567 vs. NCBI nr
Match: gi|659087794|ref|XP_008444640.1| (PREDICTED: probable carboxylesterase 2 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-12
Identity = 39/62 (62.90%), Postives = 39/62 (62.90%), Query Frame = 2


Query: 20  GLFCPARPENDDPWVNPXXXXXXXXXXXXXXXXXXCVAEKDVLRDRGRLYFEALGAVGGS 79
           G  CPARPENDDPWVNP                  CVAEKDVLRDRGRLYFEAL   GGS
Sbjct: 221 GFICPARPENDDPWVNPVAEGAGRLAGLGSGRVLVCVAEKDVLRDRGRLYFEAL---GGS 279

Query: 80  GW 139
           GW
Sbjct: 281 GW 279

Query: 140  199
           
Sbjct: 341  279

Query: 200  206
           
Sbjct: 401  279

[Close]

BLAST of CU157567 vs. NCBI nr
Match: gi|629100979|gb|KCW66448.1| (hypothetical protein EUGRSUZ_F00245, partial [Eucalyptus grandis])

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-08
Identity = 29/58 (50.00%), Postives = 35/58 (60.34%), Query Frame = 2


Query: 29  CPARPENDDPWVNPXXXXXXXXXXXXXXXXXXCVAEKDVLRDRGRLYFEALGAVGGSG 88
           CP++P+ND+PWVNP                  CVAEKD+LRDRGRLY E LG  G +G
Sbjct: 218 CPSKPDNDEPWVNPMADGAPSLAGLGCRMVLMCVAEKDILRDRGRLYHEVLGRSGWTG 275

Query: 89   148
           
Sbjct: 278  275

Query: 149  203
           
Sbjct: 338  275

[Close]

BLAST of CU157567 vs. NCBI nr
Match: gi|702383971|ref|XP_010064185.1| (PREDICTED: probable carboxylesterase 2 [Eucalyptus grandis])

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-08
Identity = 29/58 (50.00%), Postives = 35/58 (60.34%), Query Frame = 2


Query: 29  CPARPENDDPWVNPXXXXXXXXXXXXXXXXXXCVAEKDVLRDRGRLYFEALGAVGGSG 88
           CP++P+ND+PWVNP                  CVAEKD+LRDRGRLY E LG  G +G
Sbjct: 239 CPSKPDNDEPWVNPMADGAPSLAGLGCRMVLMCVAEKDILRDRGRLYHEVLGRSGWTG 296

Query: 89   148
           
Sbjct: 299  296

Query: 149  203
           
Sbjct: 359  296

[Close]

BLAST of CU157567 vs. NCBI nr
Match: gi|702361483|ref|XP_010059959.1| (PREDICTED: probable carboxylesterase 2 [Eucalyptus grandis])

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-07
Identity = 29/59 (49.15%), Postives = 35/59 (59.32%), Query Frame = 2


Query: 29  CPARPENDDPWVNPXXXXXXXXXXXXXXXXXXCVAEKDVLRDRGRLYFEALGAVGGSGW 88
           CP+ P++D+PW+NP                  CVAEKD+LRDRGRLY E L   GGSGW
Sbjct: 238 CPSTPDSDEPWINPMADGAPRLAGLGCRRVLVCVAEKDLLRDRGRLYREVL---GGSGW 293

Query: 89   148
           
Sbjct: 298  293

Query: 149  206
           
Sbjct: 358  293

The following BLAST results are available for this feature:

BLAST of CU157567 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLA8_CUCSA	1.6e-12	62.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360060 PE=4 SV=1	[more]
A0A059BK51_EUCGR	2.3e-08	50.00	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_F00245 PE=4 ...	[more]
A0A059BJS7_EUCGR	2.0e-07	49.15	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00244 PE=4 SV=1	[more]
M1B8Z9_SOLTU	1.7e-06	49.15	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015446 PE=4 SV=1	[more]
A0A0D2SE85_GOSRA	6.4e-06	50.85	Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G103600 PE=...	[more]

BLAST of CU157567 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778671161\|ref\|XP_011649590.1\|	1.0e-12	62.90	PREDICTED: probable carboxylesterase 2 [Cucumis sativus]	[more]
gi\|659087794\|ref\|XP_008444640.1\|	1.0e-12	62.90	PREDICTED: probable carboxylesterase 2 [Cucumis melo]	[more]
gi\|629100979\|gb\|KCW66448.1\|	2.0e-08	50.00	hypothetical protein EUGRSUZ_F00245, partial [Eucalyptus grandis]	[more]
gi\|702383971\|ref\|XP_010064185.1\|	2.0e-08	50.00	PREDICTED: probable carboxylesterase 2 [Eucalyptus grandis]	[more]
gi\|702361483\|ref\|XP_010059959.1\|	1.7e-07	49.15	PREDICTED: probable carboxylesterase 2 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR013094	AB_hydrolase_3

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
molecular_function	GO:0016787	hydrolase activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa2G360060	Csa2G360060	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0008047	H0008047	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013094	Alpha/beta hydrolase fold-3	PFAM	PF07859	Abhydrolase_3	coord: 10..66 score: 2.
None	No IPR available	PANTHER	PTHR23024	MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES	coord: 13..69 score: 1.9
None	No IPR available	PANTHER	PTHR23024:SF235	SUBFAMILY NOT NAMED	coord: 13..69 score: 1.9