CU157166 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU157166
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 19057137 .. 19057340 (+)
Sequence length203
The following sequences are available for this feature:

transcribed_cluster sequence

GCTTGTTTGCGGTAAAGAAAAGCAGCCATATAACCAAATATAAATGATCCAAAAGGTATATTGGCTACAACAATGTTGTGGTTTATTGAGAAATTAGTTGCTCCAAATAAGTCAGTGGTTGTGGACACAGAAATTGAAGTAATTGCACCTGTGCATATTGCAATTATGGCAGTGCTCATACAAAGGCTCGTATCACTTGGACT
BLAST of CU157166 vs. Swiss-Prot
Match: NFD4_ARATH (Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-06
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = -1

Query: 12  VSTTTDLFGATNFSINHNIVVANIPFGSFIFGYMAAFLY 71
           VS T+DLFG  +  +NHNI++ NIP GS ++GY+AA +Y
Sbjct: 471 VSITSDLFGPNSVGVNHNILITNIPIGSLLYGYIAASIY 509

Query: 72  129
           
Sbjct: 531 509

BLAST of CU157166 vs. TrEMBL
Match: A0A0A0LYD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533690 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 8.1e-19
Identity = 51/67 (76.12%), Postives = 51/67 (76.12%), Query Frame = -1

Query: 3   SPSDTSLCMXXXXXXXXXXXXXXXXVSTTTDLFGATNFSINHNIVVANIPFGSFIFGYMA 62
           SPSDTSLCM                VSTTTDLFGATNFSINHNIVVANIPFGSFIFGYMA
Sbjct: 408 SPSDTSLCMSTAIIAICTGAITSISVSTTTDLFGATNFSINHNIVVANIPFGSFIFGYMA 467

Query: 63  AFLYRKQ 122
           AFLYRKQ
Sbjct: 468 AFLYRKQ 474

Query: 123 182
           
Sbjct: 528 474

Query: 183 204
           
Sbjct: 588 474

BLAST of CU157166 vs. TrEMBL
Match: G8GJ73_LINUS (Putative nodulin protein OS=Linum usitatissimum PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-10
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = -1

Query: 6   VSTTTDLFGATNFSINHNIVVANIPFGSFIFGYMAAFLYRK 65
           VSTTT LFG TNFSINHN+VV+NIP GSF +GY+AAF+YR+
Sbjct: 465 VSTTTQLFGTTNFSINHNVVVSNIPLGSFAYGYLAAFIYRR 505

Query: 66  125
           
Sbjct: 525 505

Query: 126 129
           
Sbjct: 585 505

BLAST of CU157166 vs. TrEMBL
Match: I1JHJ4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G233200 PE=4 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-10
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = -1

Query: 6   VSTTTDLFGATNFSINHNIVVANIPFGSFIFGYMAAFLYRK 65
           VSTTT+LFG  NFS+NHN+VVANIP GSF+FGY+AAF+Y K
Sbjct: 437 VSTTTELFGTKNFSVNHNVVVANIPVGSFLFGYLAAFVYHK 477

Query: 66  125
           
Sbjct: 497 477

Query: 126 129
           
Sbjct: 557 477

BLAST of CU157166 vs. TrEMBL
Match: A0A0B2SM98_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_022747 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-10
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = -1

Query: 6   VSTTTDLFGATNFSINHNIVVANIPFGSFIFGYMAAFLYRK 65
           VSTTT+LFG  NFS+NHN+VVANIP GSF+FGY+AAF+Y K
Sbjct: 397 VSTTTELFGTKNFSVNHNVVVANIPVGSFLFGYLAAFVYHK 437

Query: 66  125
           
Sbjct: 457 437

Query: 126 129
           
Sbjct: 517 437

BLAST of CU157166 vs. TrEMBL
Match: A0A067LBI9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17339 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-10
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = -1

Query: 3   VSTTTDLFGATNFSINHNIVVANIPFGSFIFGYMAAFLYRKQ 62
           VSTTT+LFG  NFSINHN++VANIP GSF+FGY+AA LY K+
Sbjct: 435 VSTTTELFGTKNFSINHNVLVANIPLGSFVFGYLAALLYHKE 476

Query: 63  122
           
Sbjct: 495 476

Query: 123 129
           
Sbjct: 555 476

BLAST of CU157166 vs. NCBI nr
Match: gi|778661856|ref|XP_011658866.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 2.6e-18
Identity = 51/67 (76.12%), Postives = 51/67 (76.12%), Query Frame = -1

Query: 3   SPSDTSLCMXXXXXXXXXXXXXXXXVSTTTDLFGATNFSINHNIVVANIPFGSFIFGYMA 62
           SPSDTSLCM                VSTTTDLFGATNFSINHNIVVANIPFGSFIFGYMA
Sbjct: 408 SPSDTSLCMSTAIIAICTGAITSISVSTTTDLFGATNFSINHNIVVANIPFGSFIFGYMA 467

Query: 63  AFLYRKQ 122
           AFLYRKQ
Sbjct: 468 AFLYRKQ 474

Query: 123 182
           
Sbjct: 528 474

Query: 183 204
           
Sbjct: 588 474

BLAST of CU157166 vs. NCBI nr
Match: gi|659114947|ref|XP_008457307.1| (PREDICTED: uncharacterized protein LOC103497028 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 49/67 (73.13%), Postives = 50/67 (74.63%), Query Frame = -1

Query: 3   SPSDTSLCMXXXXXXXXXXXXXXXXVSTTTDLFGATNFSINHNIVVANIPFGSFIFGYMA 62
           SPSDTSLCM                VSTTTDLFGATNFSINHN+VVANIPFGSFIFGYMA
Sbjct: 408 SPSDTSLCMSTAIIAICTGAITSISVSTTTDLFGATNFSINHNVVVANIPFGSFIFGYMA 467

Query: 63  AFLYRKQ 122
           AFLY KQ
Sbjct: 468 AFLYHKQ 474

Query: 123 182
           
Sbjct: 528 474

Query: 183 204
           
Sbjct: 588 474

BLAST of CU157166 vs. NCBI nr
Match: gi|1011994127|ref|XP_015950246.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Arachis duranensis])

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-10
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = -1

Query: 3   VSTTTDLFGATNFSINHNIVVANIPFGSFIFGYMAAFLYRKQ 62
           VSTTT+LFG  NFS+NHN+VVANIP GSFIFGY AA LYRK+
Sbjct: 449 VSTTTELFGTKNFSVNHNVVVANIPMGSFIFGYSAAILYRKE 490

Query: 63  122
           
Sbjct: 509 490

Query: 123 129
           
Sbjct: 569 490

BLAST of CU157166 vs. NCBI nr
Match: gi|802540820|ref|XP_012078420.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas])

HSP 1 Score: 70.9 bits (172), Expect = 9.8e-10
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = -1

Query: 3   VSTTTDLFGATNFSINHNIVVANIPFGSFIFGYMAAFLYRKQ 62
           VSTTT+LFG  NFSINHN++VANIP GSF+FGY+AA LY K+
Sbjct: 435 VSTTTELFGTKNFSINHNVLVANIPLGSFVFGYLAALLYHKE 476

Query: 63  122
           
Sbjct: 495 476

Query: 123 129
           
Sbjct: 555 476

BLAST of CU157166 vs. NCBI nr
Match: gi|355430069|gb|AER92595.1| (putative nodulin protein [Linum usitatissimum])

HSP 1 Score: 70.9 bits (172), Expect = 9.8e-10
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = -1

Query: 6   VSTTTDLFGATNFSINHNIVVANIPFGSFIFGYMAAFLYRK 65
           VSTTT LFG TNFSINHN+VV+NIP GSF +GY+AAF+YR+
Sbjct: 465 VSTTTQLFGTTNFSINHNVVVSNIPLGSFAYGYLAAFIYRR 505

Query: 66  125
           
Sbjct: 525 505

Query: 126 129
           
Sbjct: 585 505

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
NFD4_ARATH1.3e-0653.85Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LYD4_CUCSA8.1e-1976.12Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533690 PE=4 SV=1[more]
G8GJ73_LINUS2.4e-1075.61Putative nodulin protein OS=Linum usitatissimum PE=4 SV=1[more]
I1JHJ4_SOYBN2.4e-1075.61Uncharacterized protein OS=Glycine max GN=GLYMA_02G233200 PE=4 SV=2[more]
A0A0B2SM98_GLYSO2.4e-1075.61Uncharacterized protein OS=Glycine soja GN=glysoja_022747 PE=4 SV=1[more]
A0A067LBI9_JATCU3.1e-1073.81Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17339 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778661856|ref|XP_011658866.1|2.6e-1876.12PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Cucumis sativus][more]
gi|659114947|ref|XP_008457307.1|1.3e-1773.13PREDICTED: uncharacterized protein LOC103497028 [Cucumis melo][more]
gi|1011994127|ref|XP_015950246.1|2.6e-1078.57PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Arachis duranensis][more]
gi|802540820|ref|XP_012078420.1|9.8e-1073.81PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas][more]
gi|355430069|gb|AER92595.1|9.8e-1075.61putative nodulin protein [Linum usitatissimum][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G533690Csa1G533690gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0006462H0006462EST