CU156215 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU156215
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 3006542 .. 3006728 (+)
Sequence length	193

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGCAGCGCTGAGGCCAAATTTCCTCACATATTCCTAAACTCATAGCTCTGTATTCAGCCTCAGCGCTGCTCCTGGCCACAACACTTTGCTTCTTACTCCTCCACGTTACAAGATTTCCCCAAACAAAGGTACAATAACCAAAGGTAGATTTCCTGTCAACAACAGATCCTGCACAATCCGAGTCAGTGTATGC

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU156215 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-10
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = -1


Query: 14  AYTDSDCAGSVVDRKSTFGYCTFVWGNLVTWRSKKQSVVARSSAEAEYRAMSLGICEEIW 73
           A+ DSD AG    R+ST G+CTF+  N+++W +K+Q  V+RSS E EYRA++L   E  W
Sbjct: 166 AFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

Query: 74   133
           
Sbjct: 226  225

Query: 134  193
           
Sbjct: 286  225

[Close]

BLAST of CU156215 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-08
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = -1


Query: 14   YTDSDCAGSVVDRKSTFGYCTFVWG-NLVTWRSKKQSVVARSSAEAEYRAMSLGICEEIW 73
            Y DSD AGS +DRKST GY   ++  NL+ W +K+Q+ VA SS EAEY A+   + E +W
Sbjct: 1251 YVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALW 1310

Query: 74    133
            
Sbjct: 1311  1310

Query: 134   191
            
Sbjct: 1371  1310

[Close]

BLAST of CU156215 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-06
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = -1


Query: 5    YTDSDCAGSVVDRKSTFGYCTFVWGNLVTWRSKKQSVVARSSAEAEYRAMSLGICEEIWP 64
            YTD+D AG + +RKS+ GY     G  ++W+SK Q  VA S+ EAEY A +    E IW 
Sbjct: 1178 YTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWL 1237

Query: 65   QR 124
            +R
Sbjct: 1238 KR 1239

Query: 125   184
            
Sbjct: 1298  1239

Query: 185   191
            
Sbjct: 1358  1239

[Close]

BLAST of CU156215 vs. TrEMBL
Match: Q04357_SOLTU (Potato DNA for copia-like transposable element OS=Solanum tuberosum PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.7e-22
Identity = 50/63 (79.37%), Postives = 58/63 (92.06%), Query Frame = -1


Query: 5   AYTDSDCAGSVVDRKSTFGYCTFVWGNLVTWRSKKQSVVARSSAEAEYRAMSLGICEEIW 64
           AYTD+D AGS +DR+ST GYCTFVWGNLVTWRSKKQ+VVARSSAEAEYR+M+LGICE +W
Sbjct: 244 AYTDADWAGSSIDRRSTSGYCTFVWGNLVTWRSKKQNVVARSSAEAEYRSMALGICEILW 303

Query: 65  PQR 124
            +R
Sbjct: 304 LKR 306

Query: 125  184
           
Sbjct: 364  306

Query: 185  194
           
Sbjct: 424  306

[Close]

BLAST of CU156215 vs. TrEMBL
Match: A5BTF0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025852 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.2e-21
Identity = 47/62 (75.81%), Postives = 58/62 (93.55%), Query Frame = -1


Query: 5    YTDSDCAGSVVDRKSTFGYCTFVWGNLVTWRSKKQSVVARSSAEAEYRAMSLGICEEIWP 64
            Y+D+D AG+++DR+STFGYC+FVWGNLVTWRSKKQSV+ARSSAEAEYRA++ GICE IW 
Sbjct: 1319 YSDADWAGNIIDRRSTFGYCSFVWGNLVTWRSKKQSVIARSSAEAEYRALAQGICEGIWI 1378

Query: 65   QR 124
            +R
Sbjct: 1379 KR 1380

Query: 125   184
            
Sbjct: 1439  1380

Query: 185   191
            
Sbjct: 1499  1380

[Close]

BLAST of CU156215 vs. TrEMBL
Match: A5BTF0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025852 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-09
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = -1


Query: 14  VVDRKSTFGYCTFVWGNLVTWRSKKQSVVARSSAEAEYRAMSLGICEEIW 73
           + +++ST  YCTFV GN+VTWRSKK  VVA+SS E+E++AM+LG CE +W
Sbjct: 1   MTNKRSTSRYCTFVGGNIVTWRSKKPLVVAKSSVESEFQAMTLGTCELMW 50

Query: 74   133
           
Sbjct: 61   50

Query: 134  164
           
Sbjct: 121  50

HSP 2 Score: 108.2 bits (269), Expect = 3.7e-21
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = -1


Query: 14  AYTDSDCAGSVVDRKSTFGYCTFVWGNLVTWRSKKQSVVARSSAEAEYRAMSLGICEEIW 73
           AYT++D AGSV+DRKST GYCT++WGNLVTWRSKKQSVVARSSAEAEYRAM+ G+CE +W
Sbjct: 335 AYTNADWAGSVIDRKSTSGYCTYIWGNLVTWRSKKQSVVARSSAEAEYRAMAHGVCEILW 394

Query: 74   133
           
Sbjct: 395  394

Query: 134  193
           
Sbjct: 455  394

[Close]

BLAST of CU156215 vs. TrEMBL
Match: W9R7J3_9ROSA (Copia protein OS=Morus notabilis GN=L484_007434 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-20
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = -1


Query: 5   AYTDSDCAGSVVDRKSTFGYCTFVWGNLVTWRSKKQSVVARSSAEAEYRAMSLGICEEIW 64
           AYTD+D AGSV DR+ST GYC FVWGNLVTWR KKQSVVARSSAEAE+RAM+ G+CE IW
Sbjct: 96  AYTDADWAGSVTDRRSTTGYCCFVWGNLVTWRRKKQSVVARSSAEAEFRAMANGLCELIW 155

Query: 65  PQR 124
            QR
Sbjct: 156 LQR 158

Query: 125  184
           
Sbjct: 216  158

Query: 185  194
           
Sbjct: 276  158

[Close]

BLAST of CU156215 vs. TrEMBL
Match: A5B5I8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032051 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-20
Identity = 47/62 (75.81%), Postives = 57/62 (91.94%), Query Frame = -1


Query: 5    YTDSDCAGSVVDRKSTFGYCTFVWGNLVTWRSKKQSVVARSSAEAEYRAMSLGICEEIWP 64
            Y+D+D AG+++DR+ST GYC+FVWGNLVTWRSKKQSVVARSSAEAEYRA++ GICE IW 
Sbjct: 1291 YSDADXAGNIIDRRSTSGYCSFVWGNLVTWRSKKQSVVARSSAEAEYRALAQGICEGIWI 1350

Query: 65   QR 124
            +R
Sbjct: 1351 KR 1352

Query: 125   184
            
Sbjct: 1411  1352

Query: 185   191
            
Sbjct: 1471  1352

[Close]

BLAST of CU156215 vs. NCBI nr
Match: gi|21434|emb|CAA36616.1| (unnamed protein product [Solanum tuberosum])

HSP 1 Score: 110.9 bits (276), Expect = 8.2e-22
Identity = 50/63 (79.37%), Postives = 58/63 (92.06%), Query Frame = -1


Query: 5   AYTDSDCAGSVVDRKSTFGYCTFVWGNLVTWRSKKQSVVARSSAEAEYRAMSLGICEEIW 64
           AYTD+D AGS +DR+ST GYCTFVWGNLVTWRSKKQ+VVARSSAEAEYR+M+LGICE +W
Sbjct: 244 AYTDADWAGSSIDRRSTSGYCTFVWGNLVTWRSKKQNVVARSSAEAEYRSMALGICEILW 303

Query: 65  PQR 124
            +R
Sbjct: 304 LKR 306

Query: 125  184
           
Sbjct: 364  306

Query: 185  194
           
Sbjct: 424  306

[Close]

BLAST of CU156215 vs. NCBI nr
Match: gi|147860623|emb|CAN83575.1| (hypothetical protein VITISV_025852 [Vitis vinifera])

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-21
Identity = 47/62 (75.81%), Postives = 58/62 (93.55%), Query Frame = -1


Query: 5    YTDSDCAGSVVDRKSTFGYCTFVWGNLVTWRSKKQSVVARSSAEAEYRAMSLGICEEIWP 64
            Y+D+D AG+++DR+STFGYC+FVWGNLVTWRSKKQSV+ARSSAEAEYRA++ GICE IW 
Sbjct: 1319 YSDADWAGNIIDRRSTFGYCSFVWGNLVTWRSKKQSVIARSSAEAEYRALAQGICEGIWI 1378

Query: 65   QR 124
            +R
Sbjct: 1379 KR 1380

Query: 125   184
            
Sbjct: 1439  1380

Query: 185   191
            
Sbjct: 1499  1380

[Close]

BLAST of CU156215 vs. NCBI nr
Match: gi|823126801|ref|XP_012491126.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105803458, partial [Gossypium raimondii])

HSP 1 Score: 108.6 bits (270), Expect = 4.1e-21
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = -1


Query: 5    YTDSDCAGSVVDRKSTFGYCTFVWGNLVTWRSKKQSVVARSSAEAEYRAMSLGICEEIWP 64
            YTD+D AGSV DR+ST GYC++VWGNLVTWRSKKQSVVARSSAEAEYRA+S GICE +W 
Sbjct: 940  YTDADWAGSVNDRRSTSGYCSYVWGNLVTWRSKKQSVVARSSAEAEYRALSHGICEGVWI 999

Query: 65   QR 124
            QR
Sbjct: 1000 QR 1001

Query: 125   184
            
Sbjct: 1060  1001

Query: 185   191
            
Sbjct: 1120  1001

[Close]

BLAST of CU156215 vs. NCBI nr
Match: gi|147790213|emb|CAN65603.1| (hypothetical protein VITISV_021511 [Vitis vinifera])

HSP 1 Score: 108.6 bits (270), Expect = 4.1e-21
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = -1


Query: 14  AYTDSDCAGSVVDRKSTFGYCTFVWGNLVTWRSKKQSVVARSSAEAEYRAMSLGICEEIW 73
           AYT++D AGSV+DRKST GYCT++WGNLVTWRSKKQSVVARSSAEAEYRAM+ G+CE +W
Sbjct: 335 AYTNADWAGSVIDRKSTSGYCTYIWGNLVTWRSKKQSVVARSSAEAEYRAMAHGVCEILW 394

Query: 74   133
           
Sbjct: 395  394

Query: 134  193
           
Sbjct: 455  394

[Close]

BLAST of CU156215 vs. NCBI nr
Match: gi|703095637|ref|XP_010095595.1| (Copia protein [Morus notabilis])

HSP 1 Score: 107.5 bits (267), Expect = 9.1e-21
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = -1


Query: 5   AYTDSDCAGSVVDRKSTFGYCTFVWGNLVTWRSKKQSVVARSSAEAEYRAMSLGICEEIW 64
           AYTD+D AGSV DR+ST GYC FVWGNLVTWR KKQSVVARSSAEAE+RAM+ G+CE IW
Sbjct: 96  AYTDADWAGSVTDRRSTTGYCCFVWGNLVTWRRKKQSVVARSSAEAEFRAMANGLCELIW 155

Query: 65  PQR 124
            QR
Sbjct: 156 LQR 158

Query: 125  184
           
Sbjct: 216  158

Query: 185  194
           
Sbjct: 276  158

The following BLAST results are available for this feature:

BLAST of CU156215 vs. Swiss-Prot


Match Name	E-value	Identity	Description
M810_ARATH	1.9e-10	48.33	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0...	[more]
COPIA_DROME	1.4e-08	50.00	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
POLX_TOBAC	1.3e-06	45.16	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of CU156215 vs. TrEMBL


Match Name	E-value	Identity	Description
Q04357_SOLTU	9.7e-22	79.37	Potato DNA for copia-like transposable element OS=Solanum tuberosum PE=4 SV=1	[more]
A5BTF0_VITVI	2.2e-21	75.81	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025852 PE=4 SV=1	[more]
A5BTF0_VITVI	1.5e-09	60.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025852 PE=4 SV=1	[more]
W9R7J3_9ROSA	1.1e-20	79.37	Copia protein OS=Morus notabilis GN=L484_007434 PE=4 SV=1	[more]
A5B5I8_VITVI	1.1e-20	75.81	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032051 PE=4 SV=1	[more]

BLAST of CU156215 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|21434\|emb\|CAA36616.1\|	8.2e-22	79.37	unnamed protein product [Solanum tuberosum]	[more]
gi\|147860623\|emb\|CAN83575.1\|	1.8e-21	75.81	hypothetical protein VITISV_025852 [Vitis vinifera]	[more]
gi\|823126801\|ref\|XP_012491126.1\|	4.1e-21	80.65	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105803458, partial [G...	[more]
gi\|147790213\|emb\|CAN65603.1\|	4.1e-21	80.00	hypothetical protein VITISV_021511 [Vitis vinifera]	[more]
gi\|703095637\|ref\|XP_010095595.1\|	9.1e-21	79.37	Copia protein [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G027500	Csa1G027500	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0002266	H0002266	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..60 score: 4.6
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 1..60 score: 4.6