CU156135 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU156135
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionChaperone protein ClpD, chloroplastic
LocationChr7 : 6692934 .. 6693152 (-)
Sequence length216
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

AGGCGAAAGCCCTTTCGAAGGATTTGGTTTTTACCCAACATCTTCTTCTGGGTTTGATTGCTGAGGAGAACATAATCAGTCTCCTGGCGGTTTTTTGGACTCCGGTCTTACACTTCATGTGGCACGCGAGGCTGTTCGTGGGATTTGGCATAACAATGATGCGGAAGCGGATACTAGTCTTCATGGTGCGGCTGTCACGGCTCATGTCCTTTTTCT
Homology
[Close]
BLAST of CU156135 vs. TrEMBL
Match: A0A0A0K8I1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G184670 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.5e-18
Identity = 48/67 (71.64%), Postives = 55/67 (82.09%), Query Frame = -3 

Query: 5   MSRDSRTMKTSIRFRIIVMPNPTNSLACHMKCKTGVQKTARRLIMFSSAIKPRRRCWVKT 64
           MSRDSRTMKTSIRFRIIVMPNPTNSLACHMKCKTGVQKTARRLIMF  + + +++   K 
Sbjct: 1   MSRDSRTMKTSIRFRIIVMPNPTNSLACHMKCKTGVQKTARRLIMFFLSNQTQKKMLGKN 60

Query: 65  KSFERAF 124
           +   + F
Sbjct: 61  QILRKGF 67

Query: 125  184
           
Sbjct: 121  67

Query: 185  206
           
Sbjct: 181  67

[Close]
BLAST of CU156135 vs. NCBI nr
Match: gi|778725486|ref|XP_011658949.1| (PREDICTED: chaperone protein ClpD, chloroplastic [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-19
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 2 

Query: 68  EHNQSPGGFLDSGLTLHVAREAVRGIWHNNDAEADTSLHGAAVTAHVLF 127
           EHNQSPGGFLDSGLTLHVARE VRGIWHNNDAEADTSLHGAAVTAHV F
Sbjct: 140 EHNQSPGGFLDSGLTLHVARETVRGIWHNNDAEADTSLHGAAVTAHVPF 188

Query: 128  187
           
Sbjct: 200  188

Query: 188  215
           
Sbjct: 260  188

[Close]
BLAST of CU156135 vs. NCBI nr
Match: gi|659093951|ref|XP_008447802.1| (PREDICTED: chaperone protein ClpD, chloroplastic [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-19
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 2 

Query: 68  EHNQSPGGFLDSGLTLHVAREAVRGIWHNNDAEADTSLHGAAVTAHVLF 127
           EHNQSPGGFLDSGLTLHVAREAVRGIWHNNDAE DTSLHGAAVTAHV F
Sbjct: 139 EHNQSPGGFLDSGLTLHVAREAVRGIWHNNDAEGDTSLHGAAVTAHVPF 187

Query: 128  187
           
Sbjct: 199  187

Query: 188  215
           
Sbjct: 259  187

[Close]
BLAST of CU156135 vs. NCBI nr
Match: gi|700188863|gb|KGN44096.1| (hypothetical protein Csa_7G184670 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 3.0e-17
Identity = 48/67 (71.64%), Postives = 55/67 (82.09%), Query Frame = -3 

Query: 5   MSRDSRTMKTSIRFRIIVMPNPTNSLACHMKCKTGVQKTARRLIMFSSAIKPRRRCWVKT 64
           MSRDSRTMKTSIRFRIIVMPNPTNSLACHMKCKTGVQKTARRLIMF  + + +++   K 
Sbjct: 1   MSRDSRTMKTSIRFRIIVMPNPTNSLACHMKCKTGVQKTARRLIMFFLSNQTQKKMLGKN 60

Query: 65  KSFERAF 124
           +   + F
Sbjct: 61  QILRKGF 67

Query: 125  184
           
Sbjct: 121  67

Query: 185  206
           
Sbjct: 181  67

The following BLAST results are available for this feature:
BLAST of CU156135 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8I1_CUCSA5.5e-1871.64Uncharacterized protein OS=Cucumis sativus GN=Csa_7G184670 PE=4 SV=1[more]
BLAST of CU156135 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778725486|ref|XP_011658949.1|3.2e-1995.92PREDICTED: chaperone protein ClpD, chloroplastic [Cucumis sativus][more]
gi|659093951|ref|XP_008447802.1|3.2e-1995.92PREDICTED: chaperone protein ClpD, chloroplastic [Cucumis melo][more]
gi|700188863|gb|KGN44096.1|3.0e-1771.64hypothetical protein Csa_7G184670 [Cucumis sativus][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa7G184670Csa7G184670gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0001981H0001981EST