CU155402 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU155402
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 5537350 .. 5537478 (-)
Sequence length131
The following sequences are available for this feature:

transcribed_cluster sequence

GTCTTCGGATAATGGGCATTTTAGTAGAGCATATCATTCGCCTTGGGCCTCTTGATTTCAAGAGATTAAATTTGTAAGAAACTTGCCCAACCTCAAAAGTTACCTGCTGACACTTGTGGGACTAATTTGCT
Library categoryESTs
gynoecious flower library1
BLAST of CU155402 vs. Swiss-Prot
Match: TLP10_ORYSJ (Tubby-like F-box protein 10 OS=Oryza sativa subsp. japonica GN=TULP10 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 7.2e-06
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2

Query: 14  CQQVT---FEVGQVSYKFNLLKSRGPRRMICSTKMP 73
           C Q++   F VGQ+SYK+NLLKSRGPRRM C+ + P
Sbjct: 204 CPQISAGNFNVGQISYKYNLLKSRGPRRMFCTMECP 239

Query: 74  113
           
Sbjct: 264 239

BLAST of CU155402 vs. Swiss-Prot
Match: TLP1_ORYSJ (Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 9.4e-06
Identity = 21/28 (75.00%), Postives = 23/28 (82.14%), Query Frame = -2

Query: 14  FEVGQVSYKFNLLKSRGPRRMICSTKMP 73
           +EVGQVSYK+NLLKSRGPRRM C+ + P
Sbjct: 216 YEVGQVSYKYNLLKSRGPRRMYCALECP 243

Query: 74  98
           
Sbjct: 276 243

BLAST of CU155402 vs. Swiss-Prot
Match: TLP9_ORYSJ (Tubby-like F-box protein 9 OS=Oryza sativa subsp. japonica GN=TULP9 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 9.4e-06
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = -2

Query: 11  FEVGQVSYKFNLLKSRGPRRMICSTKMPI 70
           +EVGQVSYKFN LKSRGPRRM C+ + P+
Sbjct: 233 YEVGQVSYKFNFLKSRGPRRMQCNIQCPV 261

Query: 71  98
           
Sbjct: 293 261

BLAST of CU155402 vs. TrEMBL
Match: B9I1T1_POPTR (Tubby-like F-box protein OS=Populus trichocarpa GN=POPTR_0011s11070g PE=3 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 2.3e-06
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = -2

Query: 5   FEVGQVSYKFNLLKSRGPRRMICSTKMPIIR 64
           FEVGQVSYKFNLLKSRGPRRM+CS K P+++
Sbjct: 233 FEVGQVSYKFNLLKSRGPRRMVCSLKCPVLQ 263

Query: 65  98
           
Sbjct: 293 263

BLAST of CU155402 vs. TrEMBL
Match: A0A061F8E7_THECC (Tubby-like F-box protein OS=Theobroma cacao GN=TCM_031865 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.9e-06
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = -2

Query: 8   FEVGQVSYKFNLLKSRGPRRMICSTKMPII 67
           FEVGQVSYKFNLLKSRGPRRM+CS K P++
Sbjct: 240 FEVGQVSYKFNLLKSRGPRRMVCSIKCPLL 269

Query: 68  98
           
Sbjct: 300 269

BLAST of CU155402 vs. TrEMBL
Match: A0A061F9E3_THECC (Tubby-like F-box protein OS=Theobroma cacao GN=TCM_031865 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.9e-06
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = -2

Query: 8   FEVGQVSYKFNLLKSRGPRRMICSTKMPII 67
           FEVGQVSYKFNLLKSRGPRRM+CS K P++
Sbjct: 243 FEVGQVSYKFNLLKSRGPRRMVCSIKCPLL 272

Query: 68  98
           
Sbjct: 303 272

BLAST of CU155402 vs. TrEMBL
Match: A0A061F8W0_THECC (Tubby-like F-box protein OS=Theobroma cacao GN=TCM_031865 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.9e-06
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = -2

Query: 8   FEVGQVSYKFNLLKSRGPRRMICSTKMPII 67
           FEVGQVSYKFNLLKSRGPRRM+CS K P++
Sbjct: 229 FEVGQVSYKFNLLKSRGPRRMVCSIKCPLL 258

Query: 68  98
           
Sbjct: 289 258

BLAST of CU155402 vs. TrEMBL
Match: A0A0A0KVF2_CUCSA (Tubby-like F-box protein OS=Cucumis sativus GN=Csa_4G082420 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.0e-06
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = -2

Query: 11  FEVGQVSYKFNLLKSRGPRRMICSTKMPI 70
           FEVGQVSYKFNLLKSRGPRRMICS K P+
Sbjct: 232 FEVGQVSYKFNLLKSRGPRRMICSLKCPL 260

Query: 71  98
           
Sbjct: 292 260

BLAST of CU155402 vs. NCBI nr
Match: gi|566194889|ref|XP_002316855.2| (hypothetical protein POPTR_0011s11070g [Populus trichocarpa])

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-06
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = -2

Query: 5   FEVGQVSYKFNLLKSRGPRRMICSTKMPIIR 64
           FEVGQVSYKFNLLKSRGPRRM+CS K P+++
Sbjct: 233 FEVGQVSYKFNLLKSRGPRRMVCSLKCPVLQ 263

Query: 65  98
           
Sbjct: 293 263

BLAST of CU155402 vs. NCBI nr
Match: gi|659101729|ref|XP_008451763.1| (PREDICTED: tubby-like F-box protein 7 [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-06
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = -2

Query: 11  FEVGQVSYKFNLLKSRGPRRMICSTKMPI 70
           FEVGQVSYKFNLLKSRGPRRMICS K P+
Sbjct: 235 FEVGQVSYKFNLLKSRGPRRMICSLKCPV 263

Query: 71  98
           
Sbjct: 295 263

BLAST of CU155402 vs. NCBI nr
Match: gi|590610361|ref|XP_007021792.1| (Tubby like protein 7 isoform 2 [Theobroma cacao])

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-06
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = -2

Query: 8   FEVGQVSYKFNLLKSRGPRRMICSTKMPII 67
           FEVGQVSYKFNLLKSRGPRRM+CS K P++
Sbjct: 243 FEVGQVSYKFNLLKSRGPRRMVCSIKCPLL 272

Query: 68  98
           
Sbjct: 303 272

BLAST of CU155402 vs. NCBI nr
Match: gi|590610365|ref|XP_007021793.1| (Tubby like protein 7 isoform 3 [Theobroma cacao])

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-06
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = -2

Query: 8   FEVGQVSYKFNLLKSRGPRRMICSTKMPII 67
           FEVGQVSYKFNLLKSRGPRRM+CS K P++
Sbjct: 229 FEVGQVSYKFNLLKSRGPRRMVCSIKCPLL 258

Query: 68  98
           
Sbjct: 289 258

BLAST of CU155402 vs. NCBI nr
Match: gi|590610357|ref|XP_007021791.1| (Tubby like protein 7 isoform 1 [Theobroma cacao])

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-06
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = -2

Query: 8   FEVGQVSYKFNLLKSRGPRRMICSTKMPII 67
           FEVGQVSYKFNLLKSRGPRRM+CS K P++
Sbjct: 240 FEVGQVSYKFNLLKSRGPRRMVCSIKCPLL 269

Query: 68  98
           
Sbjct: 300 269

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TLP10_ORYSJ7.2e-0661.11Tubby-like F-box protein 10 OS=Oryza sativa subsp. japonica GN=TULP10 PE=2 SV=1[more]
TLP1_ORYSJ9.4e-0675.00Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1[more]
TLP9_ORYSJ9.4e-0672.41Tubby-like F-box protein 9 OS=Oryza sativa subsp. japonica GN=TULP9 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
B9I1T1_POPTR2.3e-0680.65Tubby-like F-box protein OS=Populus trichocarpa GN=POPTR_0011s11070g PE=3 SV=2[more]
A0A061F8E7_THECC3.9e-0683.33Tubby-like F-box protein OS=Theobroma cacao GN=TCM_031865 PE=3 SV=1[more]
A0A061F9E3_THECC3.9e-0683.33Tubby-like F-box protein OS=Theobroma cacao GN=TCM_031865 PE=3 SV=1[more]
A0A061F8W0_THECC3.9e-0683.33Tubby-like F-box protein OS=Theobroma cacao GN=TCM_031865 PE=3 SV=1[more]
A0A0A0KVF2_CUCSA5.0e-0689.66Tubby-like F-box protein OS=Cucumis sativus GN=Csa_4G082420 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
gi|566194889|ref|XP_002316855.2|2.5e-0680.65hypothetical protein POPTR_0011s11070g [Populus trichocarpa][more]
gi|659101729|ref|XP_008451763.1|3.2e-0689.66PREDICTED: tubby-like F-box protein 7 [Cucumis melo][more]
gi|590610361|ref|XP_007021792.1|3.2e-0683.33Tubby like protein 7 isoform 2 [Theobroma cacao][more]
gi|590610365|ref|XP_007021793.1|3.2e-0683.33Tubby like protein 7 isoform 3 [Theobroma cacao][more]
gi|590610357|ref|XP_007021791.1|3.2e-0683.33Tubby like protein 7 isoform 1 [Theobroma cacao][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G082420Csa4G082420gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0213098G0213098EST