CU155265 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU155265
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Lipoxygenase
Location	Chr4 : 11219735 .. 11219909 (+)
Sequence length	178

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGAAGAGAAGTGGGAATACTTTTATTCAATAAGACCAGAGAATGTCCTTTTGGAGACATTTCCTACACAGCTTCAAGCGACGAAAAGTCACGGCAGTTTTGAACGTATTGTCAAGTCATTCTCCAGATGAAGAGTATATGGGAAAAGATATTGAAGCAGCATGGGCTGATGACCTTTT

Library


Library category	ESTs
gynoecious flower library	1

Homology

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BLAST of CU155265 vs. TrEMBL
Match: A0A125S6K7_CUCME (Lipoxygenase OS=Cucumis melo var. makuwa GN=LOX10 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-07
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 3


Query: 84  KVTAVLNVLSSHSPDEEYMGKDIEAAWADD 143
           KVTAVLN+LSSHSPDEEYMGKDIEAAWAD+
Sbjct: 810 KVTAVLNILSSHSPDEEYMGKDIEAAWADE 839

Query: 144  174
           
Sbjct: 870  839

[Close]

BLAST of CU155265 vs. TrEMBL
Match: A0A125S6K7_CUCME (Lipoxygenase OS=Cucumis melo var. makuwa GN=LOX10 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.7e-02
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 2


Query: 2   EEKWEYFYSIRPENVLLETFPTQLQATK 61
           EEKWE F + +PE+VLLETFPTQLQATK
Sbjct: 784 EEKWENFIN-KPEHVLLETFPTQLQATK 810

Query: 62   86
           
Sbjct: 844  810

[Close]

BLAST of CU155265 vs. NCBI nr
Match: gi|778693116|ref|XP_004142135.2| (PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 9.4e-09
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 3


Query: 84  KVTAVLNVLSSHSPDEEYMGKDIEAAWADDL 143
           KVTAVLNVLSSHSPDEEYMGKDIEAAWADDL
Sbjct: 810 KVTAVLNVLSSHSPDEEYMGKDIEAAWADDL 840

Query: 144  177
           
Sbjct: 870  840

[Close]

BLAST of CU155265 vs. NCBI nr
Match: gi|659097665|ref|XP_008449747.1| (PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-07
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 3


Query: 84  KVTAVLNVLSSHSPDEEYMGKDIEAAWADD 143
           KVTAVLN+LSSHSPDEEYMGKDIEAAWAD+
Sbjct: 810 KVTAVLNILSSHSPDEEYMGKDIEAAWADE 839

Query: 144  174
           
Sbjct: 870  839

[Close]

BLAST of CU155265 vs. NCBI nr
Match: gi|987644663|gb|AME15768.1| (lipoxygenase 10 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-07
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 3


Query: 84  KVTAVLNVLSSHSPDEEYMGKDIEAAWADD 143
           KVTAVLN+LSSHSPDEEYMGKDIEAAWAD+
Sbjct: 810 KVTAVLNILSSHSPDEEYMGKDIEAAWADE 839

Query: 144  174
           
Sbjct: 870  839

The following BLAST results are available for this feature:

BLAST of CU155265 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A125S6K7_CUCME	1.6e-07	93.33	Lipoxygenase OS=Cucumis melo var. makuwa GN=LOX10 PE=2 SV=1	[more]
A0A125S6K7_CUCME	2.7e-02	78.57	Lipoxygenase OS=Cucumis melo var. makuwa GN=LOX10 PE=2 SV=1	[more]

BLAST of CU155265 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778693116\|ref\|XP_004142135.2\|	9.4e-09	100.00	PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis sativus]	[more]
gi\|659097665\|ref\|XP_008449747.1\|	1.4e-07	93.33	PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis melo]	[more]
gi\|987644663\|gb\|AME15768.1\|	1.4e-07	93.33	lipoxygenase 10 [Cucumis melo var. makuwa]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR013819	LipOase_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	metal ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G288610	Csa4G288610	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0212114	G0212114	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013819	Lipoxygenase, C-terminal	PFAM	PF00305	Lipoxygenase	coord: 5..58 score: 3.
IPR013819	Lipoxygenase, C-terminal	PROFILE	PS51393	LIPOXYGENASE_3	coord: 1..60 score: 12