CU153828 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU153828
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 6376118 .. 6378886 (+)
Sequence length	155

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTGACGTGGAAAAATATCTCTCTAGTACCATCATGGCCGCATAGGCATCAATCTTCTTCTGCCTAGTAGATTTATTGAGACCCCTGGAAATCATATGGCTTTCCGCTTCTGCTGTTGTACCATGTTCATCATACAAGTAAACTCTCCAGCCCCTT

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU153828 vs. TrEMBL
Match: A0A0A0L3L5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116900 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 8.6e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = -2


Query: 2   RGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAMMVLERYFSTS 61
           RGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAMMVLERYFSTS
Sbjct: 155 RGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAMMVLERYFSTS 205

Query: 62   121
           
Sbjct: 215  205

Query: 122  155
           
Sbjct: 275  205

[Close]

BLAST of CU153828 vs. TrEMBL
Match: B9N0F0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s23400g PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 9.2e-15
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = -2


Query: 5   RGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAMMVLERYFST 64
           RGWRVYL DEHGT+ EA + MI  GLNKSTRQKK+DAYAA+MVLERYFST
Sbjct: 173 RGWRVYLQDEHGTSTEATNRMIDMGLNKSTRQKKVDAYAAVMVLERYFST 222

Query: 65   124
           
Sbjct: 233  222

Query: 125  155
           
Sbjct: 293  222

[Close]

BLAST of CU153828 vs. TrEMBL
Match: A0A059AUC6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00160 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.6e-14
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = -2


Query: 2   RGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAMMVLERYFSTS 61
           RGWRVYL DEHGT+AEA  HMI+ G+ +STRQKK DAYAAMMVLERYFS S
Sbjct: 147 RGWRVYLQDEHGTSAEAACHMINIGVQQSTRQKKADAYAAMMVLERYFSLS 197

Query: 62   121
           
Sbjct: 207  197

Query: 122  155
           
Sbjct: 267  197

[Close]

BLAST of CU153828 vs. TrEMBL
Match: A0A0R0KEA6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G033200 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.0e-14
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = -2


Query: 2   RGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAMMVLERYFSTS 61
           RGWRVYL DEHGTT EA+  MI+  L+KS++QKK+DAYAAMMVLERYFSTS
Sbjct: 143 RGWRVYLQDEHGTTEEAKDRMINMSLSKSSQQKKLDAYAAMMVLERYFSTS 193

Query: 62   121
           
Sbjct: 203  193

Query: 122  155
           
Sbjct: 263  193

[Close]

BLAST of CU153828 vs. TrEMBL
Match: A0A0B2QT40_GLYSO (Putative Holliday junction resolvase OS=Glycine soja GN=glysoja_044459 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.0e-14
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = -2


Query: 2   RGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAMMVLERYFSTS 61
           RGWRVYL DEHGTT EA+  MI+  L+KS++QKK+DAYAAMMVLERYFSTS
Sbjct: 143 RGWRVYLQDEHGTTEEAKDRMINMSLSKSSQQKKLDAYAAMMVLERYFSTS 193

Query: 62   121
           
Sbjct: 203  193

Query: 122  155
           
Sbjct: 263  193

[Close]

BLAST of CU153828 vs. NCBI nr
Match: gi|449431960|ref|XP_004133768.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 1.2e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = -2


Query: 2   RGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAMMVLERYFSTS 61
           RGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAMMVLERYFSTS
Sbjct: 155 RGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAMMVLERYFSTS 205

Query: 62   121
           
Sbjct: 215  205

Query: 122  155
           
Sbjct: 275  205

[Close]

BLAST of CU153828 vs. NCBI nr
Match: gi|659074761|ref|XP_008437782.1| (PREDICTED: uncharacterized protein LOC103483114 [Cucumis melo])

HSP 1 Score: 100.9 bits (250), Expect = 6.8e-19
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = -2


Query: 2   RGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAMMVLERYFSTS 61
           RGWRVYLYDEHGTTAEAESHMIS+GLNKSTRQKKIDAYAAMMVLERYF  S
Sbjct: 192 RGWRVYLYDEHGTTAEAESHMISKGLNKSTRQKKIDAYAAMMVLERYFLMS 242

Query: 62   121
           
Sbjct: 252  242

Query: 122  155
           
Sbjct: 312  242

[Close]

BLAST of CU153828 vs. NCBI nr
Match: gi|778676650|ref|XP_011650631.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X2 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 4.5e-15
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = -2


Query: 29  RGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAMM 88
           RGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAM+
Sbjct: 155 RGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAMV 196

Query: 89   148
           
Sbjct: 215  196

Query: 149  155
           
Sbjct: 275  196

[Close]

BLAST of CU153828 vs. NCBI nr
Match: gi|566168242|ref|XP_006385047.1| (hypothetical protein POPTR_0004s23400g [Populus trichocarpa])

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-14
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = -2


Query: 5   RGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAMMVLERYFST 64
           RGWRVYL DEHGT+ EA + MI  GLNKSTRQKK+DAYAA+MVLERYFST
Sbjct: 173 RGWRVYLQDEHGTSTEATNRMIDMGLNKSTRQKKVDAYAAVMVLERYFST 222

Query: 65   124
           
Sbjct: 233  222

Query: 125  155
           
Sbjct: 293  222

[Close]

BLAST of CU153828 vs. NCBI nr
Match: gi|743848990|ref|XP_011028361.1| (PREDICTED: uncharacterized protein LOC105128407 [Populus euphratica])

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-14
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = -2


Query: 5   RGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAMMVLERYFST 64
           RGWRVYL DEHGT+ EA + MI  GLNKSTRQKK+DAYAA+MVLERYFST
Sbjct: 153 RGWRVYLQDEHGTSTEATNRMIDMGLNKSTRQKKVDAYAAVMVLERYFST 202

Query: 65   124
           
Sbjct: 213  202

Query: 125  155
           
Sbjct: 273  202

The following BLAST results are available for this feature:

BLAST of CU153828 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3L5_CUCSA	8.6e-21	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116900 PE=3 SV=1	[more]
B9N0F0_POPTR	9.2e-15	80.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s23400g PE=3 SV=1	[more]
A0A059AUC6_EUCGR	4.6e-14	78.43	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00160 PE=3 SV=1	[more]
A0A0R0KEA6_SOYBN	6.0e-14	76.47	Uncharacterized protein OS=Glycine max GN=GLYMA_03G033200 PE=3 SV=1	[more]
A0A0B2QT40_GLYSO	6.0e-14	76.47	Putative Holliday junction resolvase OS=Glycine soja GN=glysoja_044459 PE=3 SV=1	[more]

BLAST of CU153828 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449431960\|ref\|XP_004133768.1\|	1.2e-20	100.00	PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus]	[more]
gi\|659074761\|ref\|XP_008437782.1\|	6.8e-19	94.12	PREDICTED: uncharacterized protein LOC103483114 [Cucumis melo]	[more]
gi\|778676650\|ref\|XP_011650631.1\|	4.5e-15	97.62	PREDICTED: uncharacterized protein LOC101219287 isoform X2 [Cucumis sativus]	[more]
gi\|566168242\|ref\|XP_006385047.1\|	1.3e-14	80.00	hypothetical protein POPTR_0004s23400g [Populus trichocarpa]	[more]
gi\|743848990\|ref\|XP_011028361.1\|	1.3e-14	80.00	PREDICTED: uncharacterized protein LOC105128407 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR005227	YqgF
IPR006641	YqgF/RNaseH-like_dom
IPR012337	RNaseH-like_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0006364	rRNA processing
GO:0006139	nucleobase-containing compound metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0006364	rRNA processing
molecular_function	GO:0003676	nucleic acid binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G116900	Csa3G116900	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0202651	G0202651	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005227	Putative pre-16S rRNA nuclease	PFAM	PF03652	RuvX	coord: 4..50 score: 3.6
IPR006641	YqgF/RNase H-like domain	GENE3D	G3DSA:3.30.420.140		coord: 4..50 score: 1.5
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 3..50 score: 1.97
None	No IPR available	PANTHER	PTHR33317	FAMILY NOT NAMED	coord: 2..52 score: 2.2
None	No IPR available	PANTHER	PTHR33317:SF2	HOLLIDAY JUNCTION RESOLVASE-RELATED	coord: 2..52 score: 2.2