CU152808 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU152808
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	DnaJ homolog subfamily C member 2
Location	Chr3 : 14793417 .. 14793623 (-)
Sequence length	208

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TCATTATGCGTTGTTGGGTTTGAGTCATTTAAGATATCTAGCGACTGAGGAACAGATAAGAAAAAGTTATCGAGAAACTGCTTTGAAGTATCATCCTGACAAACAAGCTGCGCTTCTTCTTGCTGAGGAAACTGAAGCTGACAAAACAGCAAAGAAGGATGAAATAGAAAGTCAACTTTTAAATCTATTCAAGAAGCGTATGAAGTGT

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU152808 vs. TrEMBL
Match: A0A0A0LAD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G223330 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 2


Query: 2   HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ 61
           HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ
Sbjct: 96  HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ 130

Query: 62   107
           
Sbjct: 156  130

[Close]

BLAST of CU152808 vs. TrEMBL
Match: M5VIQ8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002636mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 2


Query: 2   HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ 61
           HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ
Sbjct: 97  HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ 131

Query: 62   107
           
Sbjct: 157  131

[Close]

BLAST of CU152808 vs. TrEMBL
Match: A0A067ENI8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006420mg PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.4e-11
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 2


Query: 2   HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ 61
           HYALLGLSHLRYLATE+QIRKSYRETALKYHPDKQ
Sbjct: 96  HYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQ 130

Query: 62   107
           
Sbjct: 156  130

[Close]

BLAST of CU152808 vs. TrEMBL
Match: V4S5H7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011261mg PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.4e-11
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 2


Query: 2   HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ 61
           HYALLGLSHLRYLATE+QIRKSYRETALKYHPDKQ
Sbjct: 96  HYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQ 130

Query: 62   107
           
Sbjct: 156  130

[Close]

BLAST of CU152808 vs. TrEMBL
Match: B9SS17_RICCO (Zuotin, putative OS=Ricinus communis GN=RCOM_0519910 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-10
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 2


Query: 2   HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ 61
           HYALLGLSHLRYLATEEQIRKSYRE ALKYHPDKQ
Sbjct: 142 HYALLGLSHLRYLATEEQIRKSYREVALKYHPDKQ 176

Query: 62   107
           
Sbjct: 202  176

[Close]

BLAST of CU152808 vs. NCBI nr
Match: gi|645260575|ref|XP_008235893.1| (PREDICTED: dnaJ homolog subfamily C member 2-like [Prunus mume])

HSP 1 Score: 74.7 bits (182), Expect = 7.0e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 2


Query: 2   HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ 61
           HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ
Sbjct: 97  HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ 131

Query: 62   107
           
Sbjct: 157  131

[Close]

BLAST of CU152808 vs. NCBI nr
Match: gi|449457039|ref|XP_004146256.1| (PREDICTED: dnaJ homolog subfamily C member 2-like [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 7.0e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 2


Query: 2   HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ 61
           HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ
Sbjct: 96  HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ 130

Query: 62   107
           
Sbjct: 156  130

[Close]

BLAST of CU152808 vs. NCBI nr
Match: gi|694411784|ref|XP_009334242.1| (PREDICTED: dnaJ homolog subfamily C member 2-like [Pyrus x bretschneideri])

HSP 1 Score: 74.7 bits (182), Expect = 7.0e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 2


Query: 2   HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ 61
           HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ
Sbjct: 97  HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ 131

Query: 62   107
           
Sbjct: 157  131

[Close]

BLAST of CU152808 vs. NCBI nr
Match: gi|658027066|ref|XP_008348963.1| (PREDICTED: dnaJ homolog subfamily C member 2-like [Malus domestica])

HSP 1 Score: 74.7 bits (182), Expect = 7.0e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 2


Query: 2   HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ 61
           HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ
Sbjct: 97  HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ 131

Query: 62   107
           
Sbjct: 157  131

[Close]

BLAST of CU152808 vs. NCBI nr
Match: gi|595791969|ref|XP_007199733.1| (hypothetical protein PRUPE_ppa002636mg [Prunus persica])

HSP 1 Score: 74.7 bits (182), Expect = 7.0e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 2


Query: 2   HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ 61
           HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ
Sbjct: 97  HYALLGLSHLRYLATEEQIRKSYRETALKYHPDKQ 131

Query: 62   107
           
Sbjct: 157  131

The following BLAST results are available for this feature:

BLAST of CU152808 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAD6_CUCSA	2.9e-11	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G223330 PE=4 SV=1	[more]
M5VIQ8_PRUPE	2.9e-11	100.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002636mg PE=4 SV=1	[more]
A0A067ENI8_CITSI	6.4e-11	97.14	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006420mg PE=4 SV=1	[more]
V4S5H7_9ROSI	6.4e-11	97.14	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011261mg PE=4 SV=1	[more]
B9SS17_RICCO	1.1e-10	97.14	Zuotin, putative OS=Ricinus communis GN=RCOM_0519910 PE=4 SV=1	[more]

BLAST of CU152808 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|645260575\|ref\|XP_008235893.1\|	7.0e-11	100.00	PREDICTED: dnaJ homolog subfamily C member 2-like [Prunus mume]	[more]
gi\|449457039\|ref\|XP_004146256.1\|	7.0e-11	100.00	PREDICTED: dnaJ homolog subfamily C member 2-like [Cucumis sativus]	[more]
gi\|694411784\|ref\|XP_009334242.1\|	7.0e-11	100.00	PREDICTED: dnaJ homolog subfamily C member 2-like [Pyrus x bretschneideri]	[more]
gi\|658027066\|ref\|XP_008348963.1\|	7.0e-11	100.00	PREDICTED: dnaJ homolog subfamily C member 2-like [Malus domestica]	[more]
gi\|595791969\|ref\|XP_007199733.1\|	7.0e-11	100.00	hypothetical protein PRUPE_ppa002636mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001623	DnaJ_domain

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G223330	Csa3G223330	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0194989	G0194989	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001623	DnaJ domain	GENE3D	G3DSA:1.10.287.110		coord: 2..52 score: 8.5
IPR001623	DnaJ domain	PFAM	PF00226	DnaJ	coord: 2..37 score: 4.2
IPR001623	DnaJ domain	PROFILE	PS50076	DNAJ_2	coord: 1..65 score: 11
IPR001623	DnaJ domain	unknown	SSF46565	Chaperone J-domain	coord: 2..47 score: 2.88