CU152560 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU152560
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 11025185 .. 11025452 (-)
Sequence length267
The following sequences are available for this feature:

transcribed_cluster sequence

TTGACCTTCTAATACTCCTCGGAGAAGCACAACCCATAAGACCCAATTGGGGGCCACGGTTTCTACACCTTCTCCGTGAGACGGCGGGGCTCCGGAACTTCGTCGTTCATTTCGAAGCGATCCACGAGACGGGACCTGGATTTTCCGACAGTGGAAGGAGAAAGAAACAAGATGTCCTGGATGGAAGGGGAAGGGGTTTTCCTTCGCGGCGAAGAAATGGCGTCGACTGAGAAATGGGGTGTTTGGCGGCTTCAACGGCGAGGCGTG
Library categoryESTs
gynoecious flower library1
BLAST of CU152560 vs. TrEMBL
Match: A0A0A0KBW7_CUCSA (Reticulon-like protein OS=Cucumis sativus GN=Csa_6G157090 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-21
Identity = 56/71 (78.87%), Postives = 58/71 (81.69%), Query Frame = -2

Query: 33  QTPHFSVDAISSPRRKTPSPSIQDILFLSPSTVGKSRSRLVDRFEMNDEVPEPRRLTEKV 92
           QTPHFSVDAISSPRRKTPSPSIQDILFLSPSTVGKSRSRLVDRFEMNDEVPEP     + 
Sbjct: 28  QTPHFSVDAISSPRRKTPSPSIQDILFLSPSTVGKSRSRLVDRFEMNDEVPEPAVSRRRC 87

Query: 93  *KPWPPIGSYG 152
               P +G  G
Sbjct: 88  RNRGPQLGLMG 98

Query: 153 212
           
Sbjct: 148 98

Query: 213 246
           
Sbjct: 208 98

BLAST of CU152560 vs. TrEMBL
Match: A0A0A0KBW7_CUCSA (Reticulon-like protein OS=Cucumis sativus GN=Csa_6G157090 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-09
Identity = 46/94 (48.94%), Postives = 52/94 (55.32%), Query Frame = -3

Query: 2   RLAVEAAKHPISQSTPFLRREGKPLPLPSRTSCFFLLPLSENPGPVSWIASK*TTKFR-- 61
           RLAVEA + P   S   +    +  P PS     FL     +P  V    S+   +F   
Sbjct: 21  RLAVEADQTP-HFSVDAISSPRRKTPSPSIQDILFL-----SPSTVGKSRSRLVDRFEMN 80

Query: 62  ----SPAVSRRRCRNRGPQLGLMGCASPRSIRRS 121
                PAVSRRRCRNRGPQLGLMGCASPRSIRRS
Sbjct: 81  DEVPEPAVSRRRCRNRGPQLGLMGCASPRSIRRS 108

Query: 122 181
           
Sbjct: 141 108

Query: 182 241
           
Sbjct: 201 108

Query: 242 266
           
Sbjct: 261 108

BLAST of CU152560 vs. NCBI nr
Match: gi|700191779|gb|KGN46983.1| (hypothetical protein Csa_6G157090 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 56/71 (78.87%), Postives = 58/71 (81.69%), Query Frame = -2

Query: 33  QTPHFSVDAISSPRRKTPSPSIQDILFLSPSTVGKSRSRLVDRFEMNDEVPEPRRLTEKV 92
           QTPHFSVDAISSPRRKTPSPSIQDILFLSPSTVGKSRSRLVDRFEMNDEVPEP     + 
Sbjct: 28  QTPHFSVDAISSPRRKTPSPSIQDILFLSPSTVGKSRSRLVDRFEMNDEVPEPAVSRRRC 87

Query: 93  *KPWPPIGSYG 152
               P +G  G
Sbjct: 88  RNRGPQLGLMG 98

Query: 153 212
           
Sbjct: 148 98

Query: 213 246
           
Sbjct: 208 98

BLAST of CU152560 vs. NCBI nr
Match: gi|449463106|ref|XP_004149275.1| (PREDICTED: reticulon-like protein B17 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 56/71 (78.87%), Postives = 58/71 (81.69%), Query Frame = -2

Query: 33  QTPHFSVDAISSPRRKTPSPSIQDILFLSPSTVGKSRSRLVDRFEMNDEVPEPRRLTEKV 92
           QTPHFSVDAISSPRRKTPSPSIQDILFLSPSTVGKSRSRLVDRFEMNDEVPEP     + 
Sbjct: 28  QTPHFSVDAISSPRRKTPSPSIQDILFLSPSTVGKSRSRLVDRFEMNDEVPEPAVSRRRC 87

Query: 93  *KPWPPIGSYG 152
               P +G  G
Sbjct: 88  RNRGPQLGLMG 98

Query: 153 212
           
Sbjct: 148 98

Query: 213 246
           
Sbjct: 208 98

BLAST of CU152560 vs. NCBI nr
Match: gi|659094813|ref|XP_008448255.1| (PREDICTED: reticulon-like protein B17 [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-21
Identity = 55/71 (77.46%), Postives = 58/71 (81.69%), Query Frame = -2

Query: 33  QTPHFSVDAISSPRRKTPSPSIQDILFLSPSTVGKSRSRLVDRFEMNDEVPEPRRLTEKV 92
           QTPHFSVDAISSPRRKTPSPSIQD+LFLSPSTVGKSRSRLVDRFEMNDEVPEP     + 
Sbjct: 28  QTPHFSVDAISSPRRKTPSPSIQDLLFLSPSTVGKSRSRLVDRFEMNDEVPEPAVSRRRC 87

Query: 93  *KPWPPIGSYG 152
               P +G  G
Sbjct: 88  RNRGPQLGLMG 98

Query: 153 212
           
Sbjct: 148 98

Query: 213 246
           
Sbjct: 208 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KBW7_CUCSA1.3e-2178.87Reticulon-like protein OS=Cucumis sativus GN=Csa_6G157090 PE=4 SV=1[more]
A0A0A0KBW7_CUCSA3.4e-0948.94Reticulon-like protein OS=Cucumis sativus GN=Csa_6G157090 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700191779|gb|KGN46983.1|1.1e-2178.87hypothetical protein Csa_6G157090 [Cucumis sativus][more]
gi|449463106|ref|XP_004149275.1|1.1e-2178.87PREDICTED: reticulon-like protein B17 [Cucumis sativus][more]
gi|659094813|ref|XP_008448255.1|1.9e-2177.46PREDICTED: reticulon-like protein B17 [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa6G157090Csa6G157090gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0193033G0193033EST