CU152500 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU152500
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 8357473 .. 8357753 (+)
Sequence length	280

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CAACGGTCTCCGGCACGCCGGAGATGGTTCTACCAATTTTCCGGCAAGCTTGCGAGTCTCTAACACATGAACTAATCTTACCCCAGTAAGTATCATCCGCCACCCGGTCCCTAAGCCAACCGGAATAGTCTTGCAAATAATAGTCAAAGTAGTTACGGTTAGGGAGAGGGCGACCGGAGCCTTTCTCGGTGACGGCGTAAGCAAAAATGATGAAGCCTACGAGGGCGCCAATGACGAAGAACATGACAAAGAGGTAGAACCACATGAGGAAGGTGTTGCG

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU152500 vs. Swiss-Prot
Match: TET3_ARATH (Tetraspanin-3 OS=Arabidopsis thaliana GN=TET3 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.4e-37
Identity = 69/92 (75.00%), Postives = 77/92 (83.70%), Query Frame = -1


Query: 5   RNTFLMWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRV 64
           RN FLMW YL VM  +I AL+GFIIFAYAVT+KGSGR + NR Y DYYL+DYSGWL+DRV
Sbjct: 67  RNKFLMWLYLVVMLLIIAALIGFIIFAYAVTDKGSGRTVLNRGYLDYYLEDYSGWLKDRV 126

Query: 65  ADDTYWGKISSCVRDSQACRKIGRTISGVPET 124
           +DD+YWGKISSC+RDS ACRKIGR  +GVPET
Sbjct: 127 SDDSYWGKISSCLRDSGACRKIGRNFNGVPET 158

Query: 125  184
           
Sbjct: 187  158

Query: 185  244
           
Sbjct: 247  158

Query: 245  281
           
Sbjct: 307  158

[Close]

BLAST of CU152500 vs. Swiss-Prot
Match: TET4_ARATH (Tetraspanin-4 OS=Arabidopsis thaliana GN=TET4 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.4e-33
Identity = 64/92 (69.57%), Postives = 71/92 (77.17%), Query Frame = -1


Query: 5   RNTFLMWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRV 64
           +N FLMW YLF MFFVI AL+GF IFAY VT+KGSGR + NR Y DYYL DYSGWL+DRV
Sbjct: 67  QNKFLMWLYLFTMFFVIAALIGFTIFAYVVTDKGSGRFVMNRRYLDYYLNDYSGWLKDRV 126

Query: 65  ADDTYWGKISSCVRDSQACRKIGRTISGVPET 124
            D+ YW  I SCVRDS  C+KIGR ++GVPET
Sbjct: 127 TDNGYWRDIGSCVRDSGVCKKIGRDLNGVPET 158

Query: 125  184
           
Sbjct: 187  158

Query: 185  244
           
Sbjct: 247  158

Query: 245  281
           
Sbjct: 307  158

[Close]

BLAST of CU152500 vs. Swiss-Prot
Match: TET8_ARATH (Tetraspanin-8 OS=Arabidopsis thaliana GN=TET8 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.8e-15
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = -1


Query: 11  RNTFLMWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRV 70
           R T+L+W YLFVMF +I  +    +FA+ VT KG+G  +  + Y +Y L DYS WL+ RV
Sbjct: 67  RVTWLLWVYLFVMFLLILLVFCITVFAFVVTNKGAGEAIEGKGYKEYKLGDYSTWLQKRV 126

Query: 71  ADDTYWGKISSCVRDSQACRKIGRTISGVP 130
            +   W KI SC+ +S+ C K+      VP
Sbjct: 127 ENGKNWNKIRSCLVESKVCSKLEAKFVNVP 156

Query: 131  190
           
Sbjct: 187  156

Query: 191  250
           
Sbjct: 247  156

Query: 251  281
           
Sbjct: 307  156

[Close]

BLAST of CU152500 vs. Swiss-Prot
Match: TET6_ARATH (Tetraspanin-6 OS=Arabidopsis thaliana GN=TET6 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-15
Identity = 36/77 (46.75%), Postives = 44/77 (57.14%), Query Frame = -1


Query: 35  MWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRVADDTY 94
           +W YL VM F+I  L+G  +F   VT +G G  +P R Y +Y L DY  WLR+RV D  Y
Sbjct: 71  LWVYLVVMIFLIATLMGLTLFGLVVTSQGGGVEVPGRIYKEYRLGDYHPWLRERVRDPEY 130

Query: 95  WGKISSCVRDSQACRKI 154
           W  I SC+  S+ C KI
Sbjct: 131 WNSIRSCILSSKTCTKI 147

Query: 155  214
           
Sbjct: 191  147

Query: 215  266
           
Sbjct: 251  147

[Close]

BLAST of CU152500 vs. Swiss-Prot
Match: TET9_ARATH (Tetraspanin-9 OS=Arabidopsis thaliana GN=TET9 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.3e-15
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = -1


Query: 44  RNTFLMWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRV 103
           R T+L+W YLFVMFF+I  ++ F IFA+ VT KGSG  +  + Y +Y L+ YS WL+ RV
Sbjct: 67  RVTWLLWSYLFVMFFLILIVLCFTIFAFVVTSKGSGETIQGKAYKEYRLEAYSDWLQRRV 126

Query: 104 ADDTYWGKISSCVRDSQAC 163
            +  +W  I SC+ +S+ C
Sbjct: 127 NNAKHWNSIRSCLYESKFC 145

Query: 164  223
           
Sbjct: 187  145

Query: 224  281
           
Sbjct: 247  145

[Close]

BLAST of CU152500 vs. TrEMBL
Match: A0A0A0LS61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G089490 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 2.3e-48
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = -1


Query: 2   RNTFLMWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRV 61
           RNTFLMWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRV
Sbjct: 67  RNTFLMWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRV 126

Query: 62  ADDTYWGKISSCVRDSQACRKIGRTISGVPETV 121
           ADDTYWGKISSCVRDSQACRKIGRTISGVPETV
Sbjct: 127 ADDTYWGKISSCVRDSQACRKIGRTISGVPETV 159

Query: 122  181
           
Sbjct: 187  159

Query: 182  241
           
Sbjct: 247  159

Query: 242  281
           
Sbjct: 307  159

[Close]

BLAST of CU152500 vs. TrEMBL
Match: A0A061GVC5_THECC (Tetraspanin3 OS=Theobroma cacao GN=TCM_041101 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.4e-37
Identity = 71/92 (77.17%), Postives = 81/92 (88.04%), Query Frame = -1


Query: 5   RNTFLMWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRV 64
           RNTFLMW YLFVMFF+IGALVGFIIFAYAVT+KGSGRP+ N+ Y +YYLQDYSGWLRDRV
Sbjct: 67  RNTFLMWLYLFVMFFIIGALVGFIIFAYAVTDKGSGRPVTNKGYLEYYLQDYSGWLRDRV 126

Query: 65  ADDTYWGKISSCVRDSQACRKIGRTISGVPET 124
            D+ YW KISSC+RDS+ C K+GR  +GVPET
Sbjct: 127 VDENYWAKISSCIRDSKVCSKMGRNFNGVPET 158

Query: 125  184
           
Sbjct: 187  158

Query: 185  244
           
Sbjct: 247  158

Query: 245  281
           
Sbjct: 307  158

[Close]

BLAST of CU152500 vs. TrEMBL
Match: A0A067LHP4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05587 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.1e-37
Identity = 71/92 (77.17%), Postives = 82/92 (89.13%), Query Frame = -1


Query: 5   RNTFLMWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRV 64
           RNTFLMW YLFVMFF+I AL+GFIIFAYAVT+KGSGRP+ NR Y DYYLQDYSGWL +RV
Sbjct: 67  RNTFLMWLYLFVMFFIIAALIGFIIFAYAVTDKGSGRPVMNRAYLDYYLQDYSGWLEERV 126

Query: 65  ADDTYWGKISSCVRDSQACRKIGRTISGVPET 124
           A D+YWGKISSC+RDS+ C K+G T++GVPET
Sbjct: 127 ASDSYWGKISSCIRDSKVCAKMGVTVNGVPET 158

Query: 125  184
           
Sbjct: 187  158

Query: 185  244
           
Sbjct: 247  158

Query: 245  281
           
Sbjct: 307  158

[Close]

BLAST of CU152500 vs. TrEMBL
Match: A0A0B0MNJ2_GOSAR (Tetraspanin-5 OS=Gossypium arboreum GN=F383_17893 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 7.0e-37
Identity = 69/92 (75.00%), Postives = 82/92 (89.13%), Query Frame = -1


Query: 5   RNTFLMWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRV 64
           RNTFLMW YLFVMFF+I AL+GFIIFAYAVT+KGSGRP+ N+ Y +YYLQDYSGWL+DRV
Sbjct: 67  RNTFLMWLYLFVMFFIIAALIGFIIFAYAVTDKGSGRPVLNKGYLEYYLQDYSGWLKDRV 126

Query: 65  ADDTYWGKISSCVRDSQACRKIGRTISGVPET 124
            D++YW KISSC+RDS+ C K+GRT +GVPET
Sbjct: 127 VDESYWAKISSCIRDSKVCSKMGRTFNGVPET 158

Query: 125  184
           
Sbjct: 187  158

Query: 185  244
           
Sbjct: 247  158

Query: 245  281
           
Sbjct: 307  158

[Close]

BLAST of CU152500 vs. TrEMBL
Match: A9PGY6_POPTR (Senescence-associated family protein OS=Populus trichocarpa GN=POPTR_0009s02050g PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 7.0e-37
Identity = 72/92 (78.26%), Postives = 80/92 (86.96%), Query Frame = -1


Query: 5   RNTFLMWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRV 64
           RNTFLMW YLFVMFF+I AL+GFIIFAY VT+KGSGRPLPNR Y DYYL DYSGWL+DRV
Sbjct: 67  RNTFLMWAYLFVMFFIIAALLGFIIFAYVVTDKGSGRPLPNRAYSDYYLHDYSGWLKDRV 126

Query: 65  ADDTYWGKISSCVRDSQACRKIGRTISGVPET 124
           A D+YW KI SC+RDS+ C K+GRT SGVPET
Sbjct: 127 ASDSYWHKIGSCIRDSKVCGKMGRTTSGVPET 158

Query: 125  184
           
Sbjct: 187  158

Query: 185  244
           
Sbjct: 247  158

Query: 245  281
           
Sbjct: 307  158

[Close]

BLAST of CU152500 vs. NCBI nr
Match: gi|449459074|ref|XP_004147271.1| (PREDICTED: tetraspanin-3-like [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 8.2e-47
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = -1


Query: 2   RNTFLMWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRV 61
           RNTFLMWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRV
Sbjct: 67  RNTFLMWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRV 126

Query: 62  ADDTYWGKISSCVRDSQACRKIGRTISGVPETV 121
           ADDTYWGKISSCVRDSQACRKIGRTISGVPETV
Sbjct: 127 ADDTYWGKISSCVRDSQACRKIGRTISGVPETV 159

Query: 122  181
           
Sbjct: 187  159

Query: 182  241
           
Sbjct: 247  159

Query: 242  281
           
Sbjct: 307  159

[Close]

BLAST of CU152500 vs. NCBI nr
Match: gi|659072111|ref|XP_008463449.1| (PREDICTED: tetraspanin-3-like [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 8.2e-47
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = -1


Query: 2   RNTFLMWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRV 61
           RNTFLMWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRV
Sbjct: 67  RNTFLMWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRV 126

Query: 62  ADDTYWGKISSCVRDSQACRKIGRTISGVPETV 121
           ADDTYWGKISSCVRDSQACRKIGRTISGVPETV
Sbjct: 127 ADDTYWGKISSCVRDSQACRKIGRTISGVPETV 159

Query: 122  181
           
Sbjct: 187  159

Query: 182  241
           
Sbjct: 247  159

Query: 242  281
           
Sbjct: 307  159

[Close]

BLAST of CU152500 vs. NCBI nr
Match: gi|590585663|ref|XP_007015493.1| (Tetraspanin3 [Theobroma cacao])

HSP 1 Score: 158.7 bits (400), Expect = 5.0e-36
Identity = 71/92 (77.17%), Postives = 81/92 (88.04%), Query Frame = -1


Query: 5   RNTFLMWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRV 64
           RNTFLMW YLFVMFF+IGALVGFIIFAYAVT+KGSGRP+ N+ Y +YYLQDYSGWLRDRV
Sbjct: 67  RNTFLMWLYLFVMFFIIGALVGFIIFAYAVTDKGSGRPVTNKGYLEYYLQDYSGWLRDRV 126

Query: 65  ADDTYWGKISSCVRDSQACRKIGRTISGVPET 124
            D+ YW KISSC+RDS+ C K+GR  +GVPET
Sbjct: 127 VDENYWAKISSCIRDSKVCSKMGRNFNGVPET 158

Query: 125  184
           
Sbjct: 187  158

Query: 185  244
           
Sbjct: 247  158

Query: 245  281
           
Sbjct: 307  158

[Close]

BLAST of CU152500 vs. NCBI nr
Match: gi|658055464|ref|XP_008363477.1| (PREDICTED: tetraspanin-3-like [Malus domestica])

HSP 1 Score: 158.7 bits (400), Expect = 5.0e-36
Identity = 71/92 (77.17%), Postives = 85/92 (92.39%), Query Frame = -1


Query: 5   RNTFLMWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRV 64
           RNTFLMW YLFVMFF+I AL+GFIIFAYAVT+KGSG+P+ NR Y DYYLQDYSGWL +RV
Sbjct: 137 RNTFLMWAYLFVMFFIIAALIGFIIFAYAVTDKGSGKPVMNRAYLDYYLQDYSGWLEERV 196

Query: 65  ADDTYWGKISSCVRDSQACRKIGRTISGVPET 124
           AD++YWGKI+SCVRDS+ C+K+GRT++GVPET
Sbjct: 197 ADNSYWGKIASCVRDSKTCKKMGRTMNGVPET 228

Query: 125  184
           
Sbjct: 257  228

Query: 185  244
           
Sbjct: 317  228

Query: 245  281
           
Sbjct: 377  228

[Close]

BLAST of CU152500 vs. NCBI nr
Match: gi|802551610|ref|XP_012064890.1| (PREDICTED: tetraspanin-3-like [Jatropha curcas])

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 71/92 (77.17%), Postives = 82/92 (89.13%), Query Frame = -1


Query: 5   RNTFLMWFYLFVMFFVIGALVGFIIFAYAVTEKGSGRPLPNRNYFDYYLQDYSGWLRDRV 64
           RNTFLMW YLFVMFF+I AL+GFIIFAYAVT+KGSGRP+ NR Y DYYLQDYSGWL +RV
Sbjct: 67  RNTFLMWLYLFVMFFIIAALIGFIIFAYAVTDKGSGRPVMNRAYLDYYLQDYSGWLEERV 126

Query: 65  ADDTYWGKISSCVRDSQACRKIGRTISGVPET 124
           A D+YWGKISSC+RDS+ C K+G T++GVPET
Sbjct: 127 ASDSYWGKISSCIRDSKVCAKMGVTVNGVPET 158

Query: 125  184
           
Sbjct: 187  158

Query: 185  244
           
Sbjct: 247  158

Query: 245  281
           
Sbjct: 307  158

The following BLAST results are available for this feature:

BLAST of CU152500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TET3_ARATH	3.4e-37	75.00	Tetraspanin-3 OS=Arabidopsis thaliana GN=TET3 PE=2 SV=1	[more]
TET4_ARATH	1.4e-33	69.57	Tetraspanin-4 OS=Arabidopsis thaliana GN=TET4 PE=3 SV=1	[more]
TET8_ARATH	2.8e-15	42.22	Tetraspanin-8 OS=Arabidopsis thaliana GN=TET8 PE=2 SV=1	[more]
TET6_ARATH	3.7e-15	46.75	Tetraspanin-6 OS=Arabidopsis thaliana GN=TET6 PE=2 SV=1	[more]
TET9_ARATH	8.3e-15	46.84	Tetraspanin-9 OS=Arabidopsis thaliana GN=TET9 PE=2 SV=1	[more]

BLAST of CU152500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS61_CUCSA	2.3e-48	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G089490 PE=4 SV=1	[more]
A0A061GVC5_THECC	1.4e-37	77.17	Tetraspanin3 OS=Theobroma cacao GN=TCM_041101 PE=3 SV=1	[more]
A0A067LHP4_JATCU	3.1e-37	77.17	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05587 PE=3 SV=1	[more]
A0A0B0MNJ2_GOSAR	7.0e-37	75.00	Tetraspanin-5 OS=Gossypium arboreum GN=F383_17893 PE=3 SV=1	[more]
A9PGY6_POPTR	7.0e-37	78.26	Senescence-associated family protein OS=Populus trichocarpa GN=POPTR_0009s02050g...	[more]

BLAST of CU152500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459074\|ref\|XP_004147271.1\|	8.2e-47	100.00	PREDICTED: tetraspanin-3-like [Cucumis sativus]	[more]
gi\|659072111\|ref\|XP_008463449.1\|	8.2e-47	100.00	PREDICTED: tetraspanin-3-like [Cucumis melo]	[more]
gi\|590585663\|ref\|XP_007015493.1\|	5.0e-36	77.17	Tetraspanin3 [Theobroma cacao]	[more]
gi\|658055464\|ref\|XP_008363477.1\|	5.0e-36	77.17	PREDICTED: tetraspanin-3-like [Malus domestica]	[more]
gi\|802551610\|ref\|XP_012064890.1\|	1.1e-35	77.17	PREDICTED: tetraspanin-3-like [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G089490	Csa1G089490	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0192626	G0192626	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32191	FAMILY NOT NAMED	coord: 1..93 score: 6.6
None	No IPR available	PANTHER	PTHR32191:SF7	TETRASPANIN-16-RELATED	coord: 1..93 score: 6.6