CU151322 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU151322
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Zinc finger protein VAR3, chloroplastic
Location	Chr3 : 31299809 .. 31299906 (-)
Sequence length	106

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGGGGAGAAAAATAGATTTGTAGTTAGTAAAAAGAAGGACCGGTCTTTAACGTCTCCAGCGTATAAGAGACATGCAGCTACGGAGCAATCTGGCAGTTCTAACTT

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU151322 vs. TrEMBL
Match: A0A0A0LH28_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G812770 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.5e-08
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 3


Query: 9   KNRFVVSKKKDRSLTSPAYKRHAATEQSGSSN 68
           +NRFVVSKKKDRSLTSPAYKRHAATEQSGSSN
Sbjct: 612 ENRFVVSKKKDRSLTSPAYKRHAATEQSGSSN 643

Query: 69   105
           
Sbjct: 672  643

[Close]

BLAST of CU151322 vs. NCBI nr
Match: gi|778684966|ref|XP_004136597.2| (PREDICTED: zinc finger protein VAR3, chloroplastic [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 6.7e-07
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 3


Query: 9   KNRFVVSKKKDRSLTSPAYKRHAATEQSGSSN 68
           +NRFVVSKKKDRSLTSPAYKRHAATEQSGSSN
Sbjct: 612 ENRFVVSKKKDRSLTSPAYKRHAATEQSGSSN 643

Query: 69   105
           
Sbjct: 672  643

[Close]

BLAST of CU151322 vs. NCBI nr
Match: gi|659084929|ref|XP_008443149.1| (PREDICTED: zinc finger protein VAR3, chloroplastic [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 3.3e-06
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 3


Query: 9   KNRFVVSKKKDRSLTSPAYKRHAATEQSGSSN 68
           +NRFVVSKKKDRSLTSPAYKRHAA EQSGSSN
Sbjct: 613 ENRFVVSKKKDRSLTSPAYKRHAAMEQSGSSN 644

Query: 69   105
           
Sbjct: 673  644

The following BLAST results are available for this feature:

BLAST of CU151322 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH28_CUCSA	2.5e-08	96.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G812770 PE=4 SV=1	[more]

BLAST of CU151322 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778684966\|ref\|XP_004136597.2\|	6.7e-07	96.88	PREDICTED: zinc finger protein VAR3, chloroplastic [Cucumis sativus]	[more]
gi\|659084929\|ref\|XP_008443149.1\|	3.3e-06	93.75	PREDICTED: zinc finger protein VAR3, chloroplastic [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G812770	Csa3G812770	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0183230	G0183230	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 5..32 score: 4.0
None	No IPR available	PANTHER	PTHR23111:SF30	SUBFAMILY NOT NAMED	coord: 5..32 score: 4.0