CU150526 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU150526
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 6019072 .. 6019292 (+)
Sequence length238
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

CTCAAACAAATCAATATAATCAGACTATTAGAAGGAAGTCAAACCGTTAAACTAATTTACAAACAAATAAACAAACTTTACATAACTAAATAGAAGAAAAATAAAAAGAAGTTGACAACAAAATAAAACAAGTTCTCCAAAAGACTTCAAGCTGCAACTCCTCTACTATTCAAAGCTCTCTCCAACCTTGTTTCAAATGGTGTGGAGTGCCACTTCACTGTCTTATCCTCTCGATACT
Library
Library categoryESTs
gynoecious flower library1
Homology
[Close]
BLAST of CU150526 vs. TrEMBL
Match: A0A0A0KF36_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088090 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-07
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -3 

Query: 150 YREDKTVKWHSTPFETRLERALNSRGVAA 209
           YREDKTVKWHSTPFETRLERALNSRGVAA
Sbjct: 341 YREDKTVKWHSTPFETRLERALNSRGVAA 369

Query: 210  237
           
Sbjct: 401  369

[Close]
BLAST of CU150526 vs. NCBI nr
Match: gi|778711651|ref|XP_011656777.1| (PREDICTED: uncharacterized protein LOC101205962 isoform X1 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-07
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -3 

Query: 150 YREDKTVKWHSTPFETRLERALNSRGVAA 209
           YREDKTVKWHSTPFETRLERALNSRGVAA
Sbjct: 341 YREDKTVKWHSTPFETRLERALNSRGVAA 369

Query: 210  237
           
Sbjct: 401  369

[Close]
BLAST of CU150526 vs. NCBI nr
Match: gi|449445626|ref|XP_004140573.1| (PREDICTED: uncharacterized protein LOC101205962 isoform X2 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-07
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -3 

Query: 150 YREDKTVKWHSTPFETRLERALNSRGVAA 209
           YREDKTVKWHSTPFETRLERALNSRGVAA
Sbjct: 331 YREDKTVKWHSTPFETRLERALNSRGVAA 359

Query: 210  237
           
Sbjct: 391  359

[Close]
BLAST of CU150526 vs. NCBI nr
Match: gi|659119987|ref|XP_008459951.1| (PREDICTED: uncharacterized protein LOC103498917 isoform X1 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-07
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = -3 

Query: 150 YREDKTVKWHSTPFETRLERALNSRGVAA 209
           YREDKTV WHSTPFETRLERALNSRGVAA
Sbjct: 332 YREDKTVNWHSTPFETRLERALNSRGVAA 360

Query: 210  237
           
Sbjct: 392  360

[Close]
BLAST of CU150526 vs. NCBI nr
Match: gi|659119989|ref|XP_008459952.1| (PREDICTED: uncharacterized protein LOC103498917 isoform X2 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-07
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = -3 

Query: 150 YREDKTVKWHSTPFETRLERALNSRGVAA 209
           YREDKTV WHSTPFETRLERALNSRGVAA
Sbjct: 330 YREDKTVNWHSTPFETRLERALNSRGVAA 358

Query: 210  237
           
Sbjct: 390  358

The following BLAST results are available for this feature:
BLAST of CU150526 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KF36_CUCSA1.3e-07100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088090 PE=4 SV=1[more]
BLAST of CU150526 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778711651|ref|XP_011656777.1|1.4e-07100.00PREDICTED: uncharacterized protein LOC101205962 isoform X1 [Cucumis sativus][more]
gi|449445626|ref|XP_004140573.1|1.4e-07100.00PREDICTED: uncharacterized protein LOC101205962 isoform X2 [Cucumis sativus][more]
gi|659119987|ref|XP_008459951.1|5.3e-0796.55PREDICTED: uncharacterized protein LOC103498917 isoform X1 [Cucumis melo][more]
gi|659119989|ref|XP_008459952.1|5.3e-0796.55PREDICTED: uncharacterized protein LOC103498917 isoform X2 [Cucumis melo][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa6G088090Csa6G088090gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0176826G0176826EST