CU150065 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU150065
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Alpha-crystallin domain of heat shock protein
Location	Chr2 : 2615915 .. 2616270 (+)
Sequence length	234

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TCGCGTATCTCTTCCAGGGGTTGCTAGAGATCAAACAGACAGTTTCAGCTGCGACATGGAACCGGATGGGCAAGTGAAAATAAGAGGAGTAAACAACAACAGGGGAGAACATAGTTTGTAAGAATTCACAAATATTTCGGATGCAATCGAAAAATCTATGCCCGCCAGGTCACTTCTCTATCACTTTCCAGTTACCTGGCCCTGTCAATAACCTACAATTTTCAGGTGTCTTTT

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU150065 vs. Swiss-Prot
Match: IDM2L_ARATH (Alpha-crystallin domain-containing protein 22.3 OS=Arabidopsis thaliana GN=ACD22.3 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-13
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 3


Query: 93  TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGVF 152
           TTTGE  VCK++QIF+M ++NLCPPGHF+I FQLPGPV+N +F+G F
Sbjct: 143 TTTGEQTVCKHNQIFKMLTQNLCPPGHFTINFQLPGPVSNEEFNGNF 189

Query: 153  212
           
Sbjct: 203  189

Query: 213  234
           
Sbjct: 263  189

HSP 2 Score: 42.0 bits (97), Expect = 3.5e-03
Identity = 20/53 (37.74%), Postives = 34/53 (64.15%), Query Frame = 2


Query: 2   RVSLPGVARDQTDSFSCDMEPDGQVKIRGVNNNRGEHSL*EFTNISDAIEKSM 61
           RV+LPGV+RD+ + FSC++EPDG++ I+G     GE ++ +   I   + +++
Sbjct: 114 RVALPGVSRDEKE-FSCEIEPDGKIMIKGATTT-GEQTVCKHNQIFKMLTQNL 164

Query: 62   121
           
Sbjct: 174  164

Query: 122  161
           
Sbjct: 234  164

[Close]

BLAST of CU150065 vs. Swiss-Prot
Match: IDM2_ARATH (Increased DNA methylation 2 OS=Arabidopsis thaliana GN=IDM2 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-08
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 3


Query: 93  TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGVF 152
           TTTG   V + S +F MQ+++LCPPG+FS++F+LPGPV+  +FSG F
Sbjct: 284 TTTGGKRVKRYSHVFEMQTRSLCPPGNFSVSFRLPGPVHPHEFSGNF 330

Query: 153  212
           
Sbjct: 344  330

Query: 213  234
           
Sbjct: 404  330

HSP 2 Score: 39.3 bits (90), Expect = 2.3e-02
Identity = 19/36 (52.78%), Postives = 24/36 (66.67%), Query Frame = 2


Query: 2   RVSLPGVARDQTDSFSCDMEPDGQVKIRGVNNNRGE 61
           RVSLPGV RD+   FSC++E +G+V +RGV    G+
Sbjct: 255 RVSLPGVKRDER-YFSCEVEDNGKVLVRGVTTTGGK 289

Query: 62   110
           
Sbjct: 315  289

[Close]

BLAST of CU150065 vs. TrEMBL
Match: Q84KA6_CUCME (Heat shock protein-like protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.2e-19
Identity = 49/55 (89.09%), Postives = 49/55 (89.09%), Query Frame = 3


Query: 69  GK*K*EE*TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGVF 128
           GK K    TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSG F
Sbjct: 105 GKVKIRGVTTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGAF 159

Query: 129  188
           
Sbjct: 165  159

Query: 189  234
           
Sbjct: 225  159

[Close]

BLAST of CU150065 vs. TrEMBL
Match: Q84KA6_CUCME (Heat shock protein-like protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.8e-05
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 2


Query: 2   RVSLPGVARDQTDSFSCDMEPDGQVKIRGV 61
           RVSLPGVARDQ +SFSCDMEPDG+VKIRGV
Sbjct: 84  RVSLPGVARDQ-NSFSCDMEPDGKVKIRGV 112

Query: 62   92
           
Sbjct: 144  112

HSP 2 Score: 102.1 bits (253), Expect = 3.2e-19
Identity = 49/55 (89.09%), Postives = 49/55 (89.09%), Query Frame = 3


Query: 69  GK*K*EE*TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGVF 128
           GK K    TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSG F
Sbjct: 95  GKVKIRGVTTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGAF 149

Query: 129  188
           
Sbjct: 155  149

Query: 189  234
           
Sbjct: 215  149

[Close]

BLAST of CU150065 vs. TrEMBL
Match: Q6GX30_CUCME (Hsp2 (Fragment) OS=Cucumis melo GN=Hsp2 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.8e-05
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 2


Query: 2   RVSLPGVARDQTDSFSCDMEPDGQVKIRGV 61
           RVSLPGVARDQ +SFSCDMEPDG+VKIRGV
Sbjct: 74  RVSLPGVARDQ-NSFSCDMEPDGKVKIRGV 102

Query: 62   92
           
Sbjct: 134  102

HSP 2 Score: 101.3 bits (251), Expect = 5.4e-19
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 3


Query: 93  TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGVF 152
           TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSG F
Sbjct: 146 TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGAF 192

Query: 153  212
           
Sbjct: 206  192

Query: 213  234
           
Sbjct: 266  192

[Close]

BLAST of CU150065 vs. TrEMBL
Match: A0A0A0LGB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021590 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.6e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 2


Query: 2   RVSLPGVARDQTDSFSCDMEPDGQVKIRGV 61
           RVSLPGVARDQTDSFSCDMEPDGQVKIRGV
Sbjct: 116 RVSLPGVARDQTDSFSCDMEPDGQVKIRGV 145

Query: 62   92
           
Sbjct: 176  145

HSP 2 Score: 87.0 bits (214), Expect = 1.1e-14
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 3


Query: 93  TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGVF 152
           TTTGE  VCKNSQIFRMQ++NLCPPGHFSITFQLPGPVN+ QF G F
Sbjct: 148 TTTGEKTVCKNSQIFRMQTQNLCPPGHFSITFQLPGPVNHKQFRGHF 194

Query: 153  212
           
Sbjct: 208  194

Query: 213  234
           
Sbjct: 268  194

[Close]

BLAST of CU150065 vs. TrEMBL
Match: A0A067JL24_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23366 PE=4 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.5e-02
Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 2


Query: 2   RVSLPGVARDQTDSFSCDMEPDGQVKIRGV 61
           RVSLPGVARD+ + FSCD+EPDG + I+GV
Sbjct: 119 RVSLPGVARDEKE-FSCDIEPDGTILIKGV 147

Query: 62   92
           
Sbjct: 179  147

HSP 2 Score: 85.1 bits (209), Expect = 4.0e-14
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 3


Query: 93  TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGVF 152
           TTTGE IVCKNSQIFRMQ++NLCPPGHFSITF LPGPV++ QF G F
Sbjct: 174 TTTGEQIVCKNSQIFRMQTQNLCPPGHFSITFHLPGPVDHKQFRGHF 220

Query: 153  212
           
Sbjct: 234  220

Query: 213  234
           
Sbjct: 294  220

[Close]

BLAST of CU150065 vs. NCBI nr
Match: gi|659070402|ref|XP_008454882.1| (PREDICTED: uncharacterized protein LOC103495185 isoform X2 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 7.1e-20
Identity = 49/55 (89.09%), Postives = 49/55 (89.09%), Query Frame = 3


Query: 69  GK*K*EE*TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGVF 128
           GK K    TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSG F
Sbjct: 137 GKVKIRGVTTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGAF 191

Query: 129  188
           
Sbjct: 197  191

Query: 189  234
           
Sbjct: 257  191

[Close]

BLAST of CU150065 vs. NCBI nr
Match: gi|49176600|gb|AAT52227.1| (Hsp2 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 7.1e-20
Identity = 49/55 (89.09%), Postives = 49/55 (89.09%), Query Frame = 3


Query: 69  GK*K*EE*TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGVF 128
           GK K    TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSG F
Sbjct: 95  GKVKIRGVTTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGAF 149

Query: 129  188
           
Sbjct: 155  149

Query: 189  234
           
Sbjct: 215  149

[Close]

BLAST of CU150065 vs. NCBI nr
Match: gi|659070400|ref|XP_008454874.1| (PREDICTED: uncharacterized protein LOC103495185 isoform X1 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 7.1e-20
Identity = 49/55 (89.09%), Postives = 49/55 (89.09%), Query Frame = 3


Query: 69  GK*K*EE*TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGVF 128
           GK K    TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSG F
Sbjct: 138 GKVKIRGVTTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGAF 192

Query: 129  188
           
Sbjct: 198  192

Query: 189  234
           
Sbjct: 258  192

[Close]

BLAST of CU150065 vs. NCBI nr
Match: gi|28558785|gb|AAO45756.1| (heat shock protein-like protein [Cucumis melo subsp. melo])

HSP 1 Score: 104.8 bits (260), Expect = 7.1e-20
Identity = 49/55 (89.09%), Postives = 49/55 (89.09%), Query Frame = 3


Query: 69  GK*K*EE*TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGVF 128
           GK K    TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSG F
Sbjct: 105 GKVKIRGVTTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGAF 159

Query: 129  188
           
Sbjct: 165  159

Query: 189  234
           
Sbjct: 225  159

[Close]

BLAST of CU150065 vs. NCBI nr
Match: gi|449442837|ref|XP_004139187.1| (PREDICTED: uncharacterized protein LOC101211821 isoform X2 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-19
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 3


Query: 93  TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGVF 152
           TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSG F
Sbjct: 145 TTTGENIVCKNSQIFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGAF 191

Query: 153  212
           
Sbjct: 205  191

Query: 213  234
           
Sbjct: 265  191

The following BLAST results are available for this feature:

BLAST of CU150065 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IDM2L_ARATH	1.7e-13	68.09	Alpha-crystallin domain-containing protein 22.3 OS=Arabidopsis thaliana GN=ACD22...	[more]
IDM2_ARATH	1.2e-08	55.32	Increased DNA methylation 2 OS=Arabidopsis thaliana GN=IDM2 PE=1 SV=1	[more]

BLAST of CU150065 vs. TrEMBL


Match Name	E-value	Identity	Description
Q84KA6_CUCME	3.2e-19	89.09	Heat shock protein-like protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
Q84KA6_CUCME	5.8e-05	90.00	Heat shock protein-like protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
Q6GX30_CUCME	5.8e-05	90.00	Hsp2 (Fragment) OS=Cucumis melo GN=Hsp2 PE=2 SV=1	[more]
A0A0A0LGB8_CUCSA	5.6e-08	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021590 PE=4 SV=1	[more]
A0A067JL24_JATCU	3.5e-02	70.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23366 PE=4 SV=1	[more]

BLAST of CU150065 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070402\|ref\|XP_008454882.1\|	7.1e-20	89.09	PREDICTED: uncharacterized protein LOC103495185 isoform X2 [Cucumis melo]	[more]
gi\|49176600\|gb\|AAT52227.1\|	7.1e-20	89.09	Hsp2 [Cucumis melo]	[more]
gi\|659070400\|ref\|XP_008454874.1\|	7.1e-20	89.09	PREDICTED: uncharacterized protein LOC103495185 isoform X1 [Cucumis melo]	[more]
gi\|28558785\|gb\|AAO45756.1\|	7.1e-20	89.09	heat shock protein-like protein [Cucumis melo subsp. melo]	[more]
gi\|449442837\|ref\|XP_004139187.1\|	1.2e-19	97.87	PREDICTED: uncharacterized protein LOC101211821 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa2G021590	Csa2G021590	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0172733	G0172733	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34661	FAMILY NOT NAMED	coord: 2..78 score: 1.7
None	No IPR available	PANTHER	PTHR34661:SF3	ALPHA-CRYSTALLIN DOMAIN OF HEAT SHOCK PROTEIN-CONTAINING PROTEIN	coord: 2..78 score: 1.7