CU149806 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU149806
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 28566207 .. 28566418 (-)
Sequence length	212

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GACCATAGATGTACAAGCATCGACCCAAGCATTGATCATCACATAAAGCACTTTCAATAAATGTAGTTATCTCCTCGATTTCTTTATTTCTACACGGAAGGGACTTGGGTAGTGACGCCAACATGAGGGTTGCCTTTGCTCTTTCCAATTCAGTCTGTTTGCGACTTCTTGTATGCTCTGGGATCTTCTTAGCTCCTATCTTTTGTAGTCCA

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU149806 vs. Swiss-Prot
Match: ORC1_ORYSJ (Origin of replication complex subunit 1 OS=Oryza sativa subsp. japonica GN=ORC1 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.9e-24
Identity = 49/70 (70.00%), Postives = 62/70 (88.57%), Query Frame = -2


Query: 2   GLQKIGAKKIPEHTRSRKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQ 61
           GLQKIG +KIPEH R  ++T LE+AKATL+LA+LPKSLPCR+KE+EEI+ F++ A+C+DQ
Sbjct: 399 GLQKIGIRKIPEHVRCHQKTNLEKAKATLLLATLPKSLPCRDKEMEEISAFVKDAICNDQ 458

Query: 62  CLGRCLYIYG 121
           CLGRCLYI+G
Sbjct: 459 CLGRCLYIHG 468

Query: 122  181
           
Sbjct: 519  468

Query: 182  212
           
Sbjct: 579  468

[Close]

BLAST of CU149806 vs. Swiss-Prot
Match: ORC1A_ARATH (Origin of replication complex subunit 1A OS=Arabidopsis thaliana GN=ORC1A PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.6e-24
Identity = 48/70 (68.57%), Postives = 60/70 (85.71%), Query Frame = -2


Query: 2   GLQKIGAKKIPEHTRSRKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQ 61
           GL+K+G K+IPEH R  KQ+ELE+AKATL+LA+ PKSLPCR+KE+EEIT FI+ ++ DDQ
Sbjct: 397 GLEKVGMKRIPEHVRCHKQSELEKAKATLLLATRPKSLPCRSKEMEEITAFIKGSISDDQ 456

Query: 62  CLGRCLYIYG 121
           CLGRC+YI+G
Sbjct: 457 CLGRCMYIHG 466

Query: 122  181
           
Sbjct: 517  466

Query: 182  212
           
Sbjct: 577  466

[Close]

BLAST of CU149806 vs. Swiss-Prot
Match: ORC1B_ARATH (Origin of replication complex subunit 1B OS=Arabidopsis thaliana GN=ORC1B PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.7e-23
Identity = 47/70 (67.14%), Postives = 60/70 (85.71%), Query Frame = -2


Query: 2   GLQKIGAKKIPEHTRSRKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQ 61
           G++K+G K IPEH R  KQ+ELE+AKATL+LA+ PKSLPCR+KE+EEIT+FI+ ++ DDQ
Sbjct: 402 GVEKVGMKLIPEHVRCHKQSELEKAKATLLLATRPKSLPCRSKEMEEITSFIKGSISDDQ 461

Query: 62  CLGRCLYIYG 121
           CLGRC+YI+G
Sbjct: 462 CLGRCMYIHG 471

Query: 122  181
           
Sbjct: 522  471

Query: 182  212
           
Sbjct: 582  471

[Close]

BLAST of CU149806 vs. TrEMBL
Match: A0A0A0KM76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G525570 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 6.7e-32
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = -2


Query: 2   GLQKIGAKKIPEHTRSRKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQ 61
           GLQKIGAKKIPEHTRSRKQTELERAKATLMLASLPKSLPCRNKEIEEITTF+ESALCDDQ
Sbjct: 105 GLQKIGAKKIPEHTRSRKQTELERAKATLMLASLPKSLPCRNKEIEEITTFVESALCDDQ 164

Query: 62  CLGRCLYIYG 121
           CLGRCLYIYG
Sbjct: 165 CLGRCLYIYG 174

Query: 122  181
           
Sbjct: 225  174

Query: 182  212
           
Sbjct: 285  174

[Close]

BLAST of CU149806 vs. TrEMBL
Match: A0A0A0LED3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G644850 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.8e-30
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = -2


Query: 2   GLQKIGAKKIPEHTRSRKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQ 61
           GLQKIGAKKIP+HTR  KQTELERAKATLMLASLPKSLPCRNKEIEEITTF+ESALCDDQ
Sbjct: 383 GLQKIGAKKIPKHTRCHKQTELERAKATLMLASLPKSLPCRNKEIEEITTFVESALCDDQ 442

Query: 62  CLGRCLYIYG 121
           CLGRCLYIYG
Sbjct: 443 CLGRCLYIYG 452

Query: 122  181
           
Sbjct: 503  452

Query: 182  212
           
Sbjct: 563  452

[Close]

BLAST of CU149806 vs. TrEMBL
Match: B9RIC0_RICCO (Origin recognition complex subunit, putative OS=Ricinus communis GN=RCOM_1577650 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.5e-26
Identity = 56/70 (80.00%), Postives = 65/70 (92.86%), Query Frame = -2


Query: 2   GLQKIGAKKIPEHTRSRKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQ 61
           GLQKIGAKKIPEH R  K+TELE+AKATL+LA+LPKSLPCRNKE+EE+T FI+ A+CDDQ
Sbjct: 429 GLQKIGAKKIPEHVRCHKKTELEKAKATLLLATLPKSLPCRNKEMEEVTAFIKGAICDDQ 488

Query: 62  CLGRCLYIYG 121
           CLGRCLYI+G
Sbjct: 489 CLGRCLYIHG 498

Query: 122  181
           
Sbjct: 549  498

Query: 182  212
           
Sbjct: 609  498

[Close]

BLAST of CU149806 vs. TrEMBL
Match: A0A0B0MH05_GOSAR (Origin recognition complex subunit 1 OS=Gossypium arboreum GN=F383_19983 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 7.1e-26
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = -2


Query: 2   GLQKIGAKKIPEHTRSRKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQ 61
           G+QK+G K IPEH R  KQTELERAKATL+LA+LPKSLPCRNKE+EEITTF++ A+CDDQ
Sbjct: 533 GIQKVGTKMIPEHVRCHKQTELERAKATLLLATLPKSLPCRNKEMEEITTFVKGAICDDQ 592

Query: 62  CLGRCLYIYG 121
           CLGRCLYI+G
Sbjct: 593 CLGRCLYIHG 602

Query: 122  181
           
Sbjct: 653  602

Query: 182  212
           
Sbjct: 713  602

[Close]

BLAST of CU149806 vs. TrEMBL
Match: A0A0D2MSA8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G019600 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 7.1e-26
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = -2


Query: 2   GLQKIGAKKIPEHTRSRKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQ 61
           G+QK+G K IPEH R  KQTELERAKATL+LA+LPKSLPCRNKE+EEITTF++ A+CDDQ
Sbjct: 532 GIQKVGTKMIPEHVRCHKQTELERAKATLLLATLPKSLPCRNKEMEEITTFVKGAICDDQ 591

Query: 62  CLGRCLYIYG 121
           CLGRCLYI+G
Sbjct: 592 CLGRCLYIHG 601

Query: 122  181
           
Sbjct: 652  601

Query: 182  212
           
Sbjct: 712  601

[Close]

BLAST of CU149806 vs. NCBI nr
Match: gi|778721607|ref|XP_011658327.1| (PREDICTED: LOW QUALITY PROTEIN: origin of replication complex subunit 1-like [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-31
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = -2


Query: 2   GLQKIGAKKIPEHTRSRKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQ 61
           GLQKIGAKKIPEHTRSRKQTELERAKATLMLASLPKSLPCRNKEIEEITTF+ESALCDDQ
Sbjct: 357 GLQKIGAKKIPEHTRSRKQTELERAKATLMLASLPKSLPCRNKEIEEITTFVESALCDDQ 416

Query: 62  CLGRCLYIYG 121
           CLGRCLYIYG
Sbjct: 417 CLGRCLYIYG 426

Query: 122  181
           
Sbjct: 477  426

Query: 182  212
           
Sbjct: 537  426

[Close]

BLAST of CU149806 vs. NCBI nr
Match: gi|700194268|gb|KGN49472.1| (hypothetical protein Csa_6G525570 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-31
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = -2


Query: 2   GLQKIGAKKIPEHTRSRKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQ 61
           GLQKIGAKKIPEHTRSRKQTELERAKATLMLASLPKSLPCRNKEIEEITTF+ESALCDDQ
Sbjct: 105 GLQKIGAKKIPEHTRSRKQTELERAKATLMLASLPKSLPCRNKEIEEITTFVESALCDDQ 164

Query: 62  CLGRCLYIYG 121
           CLGRCLYIYG
Sbjct: 165 CLGRCLYIYG 174

Query: 122  181
           
Sbjct: 225  174

Query: 182  212
           
Sbjct: 285  174

[Close]

BLAST of CU149806 vs. NCBI nr
Match: gi|659078085|ref|XP_008439541.1| (PREDICTED: origin recognition complex subunit 1-like [Cucumis melo])

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-31
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = -2


Query: 2   GLQKIGAKKIPEHTRSRKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQ 61
           GLQKIGAKKIPEHTR RKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQ
Sbjct: 370 GLQKIGAKKIPEHTRCRKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQ 429

Query: 62  CLGRCLYIYG 121
           CLGRCLYIYG
Sbjct: 430 CLGRCLYIYG 439

Query: 122  181
           
Sbjct: 490  439

Query: 182  212
           
Sbjct: 550  439

[Close]

BLAST of CU149806 vs. NCBI nr
Match: gi|778682429|ref|XP_011651712.1| (PREDICTED: origin of replication complex subunit 1B-like [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 6.8e-30
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = -2


Query: 2   GLQKIGAKKIPEHTRSRKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQ 61
           GLQKIGAKKIP+HTR  KQTELERAKATLMLASLPKSLPCRNKEIEEITTF+ESALCDDQ
Sbjct: 383 GLQKIGAKKIPKHTRCHKQTELERAKATLMLASLPKSLPCRNKEIEEITTFVESALCDDQ 442

Query: 62  CLGRCLYIYG 121
           CLGRCLYIYG
Sbjct: 443 CLGRCLYIYG 452

Query: 122  181
           
Sbjct: 503  452

Query: 182  212
           
Sbjct: 563  452

[Close]

BLAST of CU149806 vs. NCBI nr
Match: gi|1009118499|ref|XP_015875890.1| (PREDICTED: origin of replication complex subunit 1B-like [Ziziphus jujuba])

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-26
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = -2


Query: 2   GLQKIGAKKIPEHTRSRKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQ 61
           GLQK+G KKIPEH R  KQTELERAKATL+LASLPKSLPCRNKE EEITTFI+ A+CDDQ
Sbjct: 465 GLQKVGMKKIPEHIRCHKQTELERAKATLLLASLPKSLPCRNKETEEITTFIKGAICDDQ 524

Query: 62  CLGRCLYIYG 121
           CLGRCLYI+G
Sbjct: 525 CLGRCLYIHG 534

Query: 122  181
           
Sbjct: 585  534

Query: 182  212
           
Sbjct: 645  534

The following BLAST results are available for this feature:

BLAST of CU149806 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ORC1_ORYSJ	1.9e-24	70.00	Origin of replication complex subunit 1 OS=Oryza sativa subsp. japonica GN=ORC1 ...	[more]
ORC1A_ARATH	9.6e-24	68.57	Origin of replication complex subunit 1A OS=Arabidopsis thaliana GN=ORC1A PE=1 S...	[more]
ORC1B_ARATH	4.7e-23	67.14	Origin of replication complex subunit 1B OS=Arabidopsis thaliana GN=ORC1B PE=1 S...	[more]

BLAST of CU149806 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM76_CUCSA	6.7e-32	98.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G525570 PE=4 SV=1	[more]
A0A0A0LED3_CUCSA	2.8e-30	94.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G644850 PE=4 SV=1	[more]
B9RIC0_RICCO	5.5e-26	80.00	Origin recognition complex subunit, putative OS=Ricinus communis GN=RCOM_1577650...	[more]
A0A0B0MH05_GOSAR	7.1e-26	78.57	Origin recognition complex subunit 1 OS=Gossypium arboreum GN=F383_19983 PE=4 SV...	[more]
A0A0D2MSA8_GOSRA	7.1e-26	78.57	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G019600 PE=4 SV=1	[more]

BLAST of CU149806 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778721607\|ref\|XP_011658327.1\|	1.6e-31	98.57	PREDICTED: LOW QUALITY PROTEIN: origin of replication complex subunit 1-like [Cu...	[more]
gi\|700194268\|gb\|KGN49472.1\|	1.6e-31	98.57	hypothetical protein Csa_6G525570 [Cucumis sativus]	[more]
gi\|659078085\|ref\|XP_008439541.1\|	4.7e-31	98.57	PREDICTED: origin recognition complex subunit 1-like [Cucumis melo]	[more]
gi\|778682429\|ref\|XP_011651712.1\|	6.8e-30	94.29	PREDICTED: origin of replication complex subunit 1B-like [Cucumis sativus]	[more]
gi\|1009118499\|ref\|XP_015875890.1\|	2.1e-26	84.29	PREDICTED: origin of replication complex subunit 1B-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G525570	Csa6G525570	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0170308	G0170308	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 70..71 scor
None	No IPR available	PANTHER	PTHR10763	CELL DIVISION CONTROL PROTEIN 6-RELATED	coord: 2..71 score: 4.7
None	No IPR available	PANTHER	PTHR10763:SF23	ORIGIN RECOGNITION COMPLEX SUBUNIT 1	coord: 2..71 score: 4.7