CU149459 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU149459
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 8400723 .. 8401125 (-)
Sequence length	286

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ACGGTGGAATTTCTTCCAAATCGTCGTCCGAACACGCTTGCCGTAGAATCGGCCACCGACGTTCTTGGGATTGACCTCCATTTTTCCCCGGAAAAATGCGAATATGTCTCTCCGGCGGCCGTCAACGACGGCGGGTTCCATGAATTCCGGCGAAAATATAAGGTGGTATTAAAATATTCTCAACATCTTGACATGGGTGCTTATATTTGACTCCAAAAGTCTGTAAAATGATTGAGTTCTTCAAGAATTCCGGTATTCCGTTCGCTATTGCCATATCTTCCAAGGA

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU149459 vs. Swiss-Prot
Match: F8H_ARATH (Probable glucuronoxylan glucuronosyltransferase F8H OS=Arabidopsis thaliana GN=F8H PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.1e-14
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = -1


Query: 155 SLEDMAIANGIPEFLKNSIILQTFGVKYKHPCQDVENILIPPYI 214
           ++EDMAI  GIP+F+K SIILQTFGVKYKHPCQ+VE+++IPPYI
Sbjct: 224 AMEDMAIEEGIPKFMKRSIILQTFGVKYKHPCQEVEHVVIPPYI 267

Query: 215  274
           
Sbjct: 284  267

Query: 275  287
           
Sbjct: 344  267

HSP 2 Score: 65.9 bits (159), Expect = 2.8e-10
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = -2


Query: 7   MEPAVVDGRRRDIFAFFRGKMEVNPKNVGGRFYGKRVRTTIWKKF 66
           +E A V+G RRDI+AFFRGKMEVNPKN+ GRFY K VRT I KKF
Sbjct: 276 IEKAPVNG-RRDIWAFFRGKMEVNPKNISGRFYSKGVRTAILKKF 319

Query: 67   126
           
Sbjct: 336  319

Query: 127  142
           
Sbjct: 396  319

[Close]

BLAST of CU149459 vs. Swiss-Prot
Match: IRX7_ARATH (Probable glucuronoxylan glucuronosyltransferase IRX7 OS=Arabidopsis thaliana GN=IRX7 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-12
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = -1


Query: 155 SLEDMAIANGIPEFLKNSIILQTFGVKYKHPCQDVENILIPPYI 214
           ++ED AIA+G+P FL+NSIILQTFGV + HPCQ+VEN++IPPYI
Sbjct: 210 TMEDRAIADGVPIFLRNSIILQTFGVTFNHPCQEVENVVIPPYI 253

Query: 215  274
           
Sbjct: 270  253

Query: 275  287
           
Sbjct: 330  253

HSP 2 Score: 61.2 bits (147), Expect = 6.9e-09
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = -2


Query: 7   RRRDIFAFFRGKMEVNPKNVGGRFYGKRVRTTIWKKF 66
           + RDI+ FFRGKME++PKN+ GRFY KRVRT IW+ +
Sbjct: 269 KERDIWVFFRGKMELHPKNISGRFYSKRVRTNIWRSY 305

Query: 67   118
           
Sbjct: 329  305

[Close]

BLAST of CU149459 vs. Swiss-Prot
Match: GT31_ORYSJ (Probable glucuronosyltransferase Os03g0107900 OS=Oryza sativa subsp. japonica GN=Os03g0107900 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-09
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = -1


Query: 155 LEDMAIANGIPEFLKNSIILQTFGVKYKHPCQDVENILIPPYI 214
           +ED+AIA+GIPEFLK SI+LQTFGV+  H CQ+ ++++IPP++
Sbjct: 190 MEDVAIADGIPEFLKRSILLQTFGVQGTHVCQEADHVVIPPHV 232

Query: 215  274
           
Sbjct: 250  232

Query: 275  284
           
Sbjct: 310  232

HSP 2 Score: 59.7 bits (143), Expect = 2.0e-08
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = -2


Query: 7   RRDIFAFFRGKMEVNPKNVGGRFYGKRVRTTIWKKF 66
           +RDIFAFFRGKMEV+PKN+ GRFY K+VRT + +K+
Sbjct: 247 QRDIFAFFRGKMEVHPKNISGRFYSKKVRTELLQKY 282

Query: 67   115
           
Sbjct: 307  282

[Close]

BLAST of CU149459 vs. TrEMBL
Match: A0A0A0LS67_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G095020 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.5e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = -2


Query: 4   SPEFMEPAVVDGRRRDIFAFFRGKMEVNPKNVGGRFYGKRVRTTIWKKFH 63
           SPEFMEPAVVDGRRRDIFAFFRGKMEVNPKNVGGRFYGKRVRTTIWKKFH
Sbjct: 255 SPEFMEPAVVDGRRRDIFAFFRGKMEVNPKNVGGRFYGKRVRTTIWKKFH 304

Query: 64   123
           
Sbjct: 315  304

Query: 124  154
           
Sbjct: 375  304

[Close]

BLAST of CU149459 vs. TrEMBL
Match: A0A0A0LS67_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G095020 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = -1


Query: 155 SLEDMAIANGIPEFLKNSIILQTFGVKYKHPCQDVENILIPPYI 214
           SLEDMAIANGIPEFLKNSIILQTFGVKYKHPCQDVENILIPPYI
Sbjct: 211 SLEDMAIANGIPEFLKNSIILQTFGVKYKHPCQDVENILIPPYI 254

Query: 215  274
           
Sbjct: 271  254

Query: 275  287
           
Sbjct: 331  254

HSP 2 Score: 82.8 bits (203), Expect = 2.5e-13
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = -1


Query: 155 SLEDMAIANGIPEFLKNSIILQTFGVKYKHPCQDVENILIPPYI 214
           ++ED AI +GIPEFLKNSIILQTFGV YKHPCQDVEN+LIPPYI
Sbjct: 218 AMEDRAIDDGIPEFLKNSIILQTFGVNYKHPCQDVENVLIPPYI 261

Query: 215  274
           
Sbjct: 278  261

Query: 275  287
           
Sbjct: 338  261

[Close]

BLAST of CU149459 vs. TrEMBL
Match: A0A061GYW4_THECC (Exostosin family protein OS=Theobroma cacao GN=TCM_042153 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.9e-07
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = -2


Query: 4   MEPAVVDGRRRDIFAFFRGKMEVNPKNVGGRFYGKRVRTTIWKKFH 63
           +E A + G R DI  FFRGKMEV+PKN+ G+FY KRVRT IW++++
Sbjct: 270 LEKAPLTGNR-DIMVFFRGKMEVHPKNISGKFYSKRVRTEIWRRYN 314

Query: 64   123
           
Sbjct: 330  314

Query: 124  142
           
Sbjct: 390  314

HSP 2 Score: 81.6 bits (200), Expect = 5.5e-13
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = -1


Query: 155 SLEDMAIANGIPEFLKNSIILQTFGVKYKHPCQDVENILIPPYI 214
           ++ED AI NGIPEFL NSI+LQTFGV YKHPCQDVEN+LIPPYI
Sbjct: 217 AMEDRAIDNGIPEFLMNSILLQTFGVNYKHPCQDVENVLIPPYI 260

Query: 215  274
           
Sbjct: 277  260

Query: 275  287
           
Sbjct: 337  260

[Close]

BLAST of CU149459 vs. TrEMBL
Match: A0A0B0NXM5_GOSAR (Putative glucuronoxylan glucuronosyltransferase IRX7-like protein OS=Gossypium arboreum GN=F383_24279 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-06
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = -2


Query: 7   MEPAVVDGRRRDIFAFFRGKMEVNPKNVGGRFYGKRVRTTIWKKF 66
           +E A + G R DI  FFRGKMEV+P NV G+FY KRVRT IW+++
Sbjct: 269 LEKAPLTGNR-DIMVFFRGKMEVHPTNVSGKFYSKRVRTEIWRRY 312

Query: 67   126
           
Sbjct: 329  312

Query: 127  142
           
Sbjct: 389  312

HSP 2 Score: 81.6 bits (200), Expect = 5.5e-13
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = -1


Query: 155 SLEDMAIANGIPEFLKNSIILQTFGVKYKHPCQDVENILIPPYI 214
           ++ED AI NGIPEFL NSI+LQTFGV YKHPCQDVEN+LIPPYI
Sbjct: 217 AMEDRAIDNGIPEFLMNSILLQTFGVNYKHPCQDVENVLIPPYI 260

Query: 215  274
           
Sbjct: 277  260

Query: 275  287
           
Sbjct: 337  260

[Close]

BLAST of CU149459 vs. TrEMBL
Match: A0A0D2THS0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G111000 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.9e-07
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = -2


Query: 7   MEPAVVDGRRRDIFAFFRGKMEVNPKNVGGRFYGKRVRTTIWKKF 66
           +E A + G R DI  FFRGKMEV+PKNV G+FY KRVRT IW+++
Sbjct: 269 LEKAPLTGNR-DIMVFFRGKMEVHPKNVSGKFYSKRVRTEIWRRY 312

Query: 67   126
           
Sbjct: 329  312

Query: 127  142
           
Sbjct: 389  312

HSP 2 Score: 81.3 bits (199), Expect = 7.2e-13
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = -1


Query: 155 EDMAIANGIPEFLKNSIILQTFGVKYKHPCQDVENILIPPYI 214
           ED A+A+GIPEF+KNSIILQTFGVKY HPCQDVENI+IPPYI
Sbjct: 223 EDRAVADGIPEFMKNSIILQTFGVKYLHPCQDVENIVIPPYI 264

Query: 215  274
           
Sbjct: 283  264

Query: 275  281
           
Sbjct: 343  264

[Close]

BLAST of CU149459 vs. NCBI nr
Match: gi|449459136|ref|XP_004147302.1| (PREDICTED: probable glucuronoxylan glucuronosyltransferase F8H [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 9.3e-22
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = -2


Query: 4   SPEFMEPAVVDGRRRDIFAFFRGKMEVNPKNVGGRFYGKRVRTTIWKKFH 63
           SPEFMEPAVVDGRRRDIFAFFRGKMEVNPKNVGGRFYGKRVRTTIWKKFH
Sbjct: 255 SPEFMEPAVVDGRRRDIFAFFRGKMEVNPKNVGGRFYGKRVRTTIWKKFH 304

Query: 64   123
           
Sbjct: 315  304

Query: 124  154
           
Sbjct: 375  304

[Close]

BLAST of CU149459 vs. NCBI nr
Match: gi|659072092|ref|XP_008463382.1| (PREDICTED: probable glucuronoxylan glucuronosyltransferase F8H [Cucumis melo])

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-16
Identity = 43/50 (86.00%), Postives = 44/50 (88.00%), Query Frame = -2


Query: 4   SPEFMEPAVVDGRRRDIFAFFRGKMEVNPKNVGGRFYGKRVRTTIWKKFH 63
           S E ME AVV+GRRRDIFAFFRGKMEVNPKNV GRFYG RVRT IWKKFH
Sbjct: 254 STESMESAVVEGRRRDIFAFFRGKMEVNPKNVSGRFYGNRVRTAIWKKFH 303

Query: 64   123
           
Sbjct: 314  303

Query: 124  154
           
Sbjct: 374  303

[Close]

BLAST of CU149459 vs. NCBI nr
Match: gi|747082895|ref|XP_011088792.1| (PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Sesamum indicum])

HSP 1 Score: 84.7 bits (208), Expect = 9.3e-14
Identity = 34/44 (77.27%), Postives = 44/44 (100.00%), Query Frame = -1


Query: 155 SLEDMAIANGIPEFLKNSIILQTFGVKYKHPCQDVENILIPPYI 214
           ++EDMA+A+G+PEFL+NSIILQTFGVK+KHPCQDVEN++IPPY+
Sbjct: 222 TMEDMAMADGVPEFLRNSIILQTFGVKHKHPCQDVENVVIPPYV 265

Query: 215  274
           
Sbjct: 282  265

Query: 275  287
           
Sbjct: 342  265

[Close]

BLAST of CU149459 vs. NCBI nr
Match: gi|590590908|ref|XP_007016868.1| (Exostosin family protein [Theobroma cacao])

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = -1


Query: 155 SLEDMAIANGIPEFLKNSIILQTFGVKYKHPCQDVENILIPPYI 214
           ++ED AI +GIPEFLKNSIILQTFGV YKHPCQDVEN+LIPPYI
Sbjct: 218 AMEDRAIDDGIPEFLKNSIILQTFGVNYKHPCQDVENVLIPPYI 261

Query: 215  274
           
Sbjct: 278  261

Query: 275  287
           
Sbjct: 338  261

[Close]

BLAST of CU149459 vs. NCBI nr
Match: gi|728839800|gb|KHG19243.1| (putative glucuronoxylan glucuronosyltransferase IRX7 -like protein [Gossypium arboreum])

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-13
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = -1


Query: 155 SLEDMAIANGIPEFLKNSIILQTFGVKYKHPCQDVENILIPPYI 214
           ++ED AI NGIPEFL NSI+LQTFGV YKHPCQDVEN+LIPPYI
Sbjct: 217 AMEDRAIDNGIPEFLMNSILLQTFGVNYKHPCQDVENVLIPPYI 260

Query: 215  274
           
Sbjct: 277  260

Query: 275  287
           
Sbjct: 337  260

The following BLAST results are available for this feature:

BLAST of CU149459 vs. Swiss-Prot


Match Name	E-value	Identity	Description
F8H_ARATH	7.1e-14	75.00	Probable glucuronoxylan glucuronosyltransferase F8H OS=Arabidopsis thaliana GN=F...	[more]
IRX7_ARATH	1.0e-12	70.45	Probable glucuronoxylan glucuronosyltransferase IRX7 OS=Arabidopsis thaliana GN=...	[more]
GT31_ORYSJ	1.4e-09	60.47	Probable glucuronosyltransferase Os03g0107900 OS=Oryza sativa subsp. japonica GN...	[more]

BLAST of CU149459 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS67_CUCSA	2.5e-21	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G095020 PE=4 SV=1	[more]
A0A0A0LS67_CUCSA	1.4e-16	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G095020 PE=4 SV=1	[more]
A0A061GYW4_THECC	5.9e-07	58.70	Exostosin family protein OS=Theobroma cacao GN=TCM_042153 PE=4 SV=1	[more]
A0A0B0NXM5_GOSAR	2.9e-06	60.00	Putative glucuronoxylan glucuronosyltransferase IRX7-like protein OS=Gossypium a...	[more]
A0A0D2THS0_GOSRA	5.9e-07	62.22	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G111000 PE=4 SV=1	[more]

BLAST of CU149459 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459136\|ref\|XP_004147302.1\|	9.3e-22	100.00	PREDICTED: probable glucuronoxylan glucuronosyltransferase F8H [Cucumis sativus]	[more]
gi\|659072092\|ref\|XP_008463382.1\|	1.2e-16	86.00	PREDICTED: probable glucuronoxylan glucuronosyltransferase F8H [Cucumis melo]	[more]
gi\|747082895\|ref\|XP_011088792.1\|	9.3e-14	77.27	PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Sesamum indicum...	[more]
gi\|590590908\|ref\|XP_007016868.1\|	1.2e-13	84.09	Exostosin family protein [Theobroma cacao]	[more]
gi\|728839800\|gb\|KHG19243.1\|	2.7e-13	81.82	putative glucuronoxylan glucuronosyltransferase IRX7 -like protein [Gossypium ar...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G095020	Csa1G095020	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0166886	G0166886	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11062	EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED	coord: 5..93 score: 3.5
None	No IPR available	PANTHER	PTHR11062:SF46	GLUCURONOXYLAN GLUCURONOSYLTRANSFERASE F8H-RELATED	coord: 5..93 score: 3.5