CU149255 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU149255
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPentatricopeptide repeat-containing protein, putative
LocationChr3 : 7946137 .. 7946353 (+)
Sequence length218
The following sequences are available for this feature:

transcribed_cluster sequence

TACTAAAGAGGGTCGGGTTTCTGATGCTTTAGCTAGTTGGAAAGAAGCCTTTTCTGCCGAGGGTTCTAAGAGTTGGAGGCCAAAAGCCCTATAATGTGTTGGCTTACTTCGACCTCTGTGAGAAAGAAGGAGACATCGCCAGCAAGGAGGTTCTAGTTGGATTACTGAGGCAGCCCAAAATATCTTCAAGACAAAACATATGCATCACTCATTGGTTT
Library categoryESTs
gynoecious flower library1
BLAST of CU149255 vs. TrEMBL
Match: A0A0A0L6I4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127020 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.7e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 3

Query: 84  KPYNVLAYFDLCEKEGDIASKEVLVGLLRQPK 143
           KPYNVLAYFDLCEKEGDIASKEVLVGLLRQPK
Sbjct: 456 KPYNVLAYFDLCEKEGDIASKEVLVGLLRQPK 487

Query: 144 180
           
Sbjct: 516 487

BLAST of CU149255 vs. TrEMBL
Match: A0A0A0L6I4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127020 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.8e-07
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 2

Query: 2   TKEGRVSDALASWKEAFSAEGSKSWRPK 61
           TKEGRVSDALASWKEAFSAEGSKSWRPK
Sbjct: 429 TKEGRVSDALASWKEAFSAEGSKSWRPK 456

Query: 62  86
           
Sbjct: 489 456


HSP 2 Score: 32.7 bits (73), Expect = 2.2e+02
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 1

Query: 175 PKYLQDKTYASLIG 217
           PKYLQDKTYASLIG
Sbjct: 486 PKYLQDKTYASLIG 499

BLAST of CU149255 vs. NCBI nr
Match: gi|449432307|ref|XP_004133941.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 3

Query: 84  KPYNVLAYFDLCEKEGDIASKEVLVGLLRQPK 143
           KPYNVLAYFDLCEKEGDIASKEVLVGLLRQPK
Sbjct: 456 KPYNVLAYFDLCEKEGDIASKEVLVGLLRQPK 487

Query: 144 180
           
Sbjct: 516 487

BLAST of CU149255 vs. NCBI nr
Match: gi|659075585|ref|XP_008438222.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-09
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 3

Query: 84  KPYNVLAYFDLCEKEGDIASKEVLVGLLRQPK 143
           KPYNVLAYFDLCEKEGDIASKEVLVG LRQPK
Sbjct: 456 KPYNVLAYFDLCEKEGDIASKEVLVGFLRQPK 487

Query: 144 180
           
Sbjct: 516 487

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L6I4_CUCSA3.7e-09100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127020 PE=4 SV=1[more]
A0A0A0L6I4_CUCSA5.8e-07100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127020 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449432307|ref|XP_004133941.1|1.4e-09100.00PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Cucumis sativu... [more]
gi|659075585|ref|XP_008438222.1|4.0e-0996.88PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa3G127020Csa3G127020gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0165187G0165187EST