CU148209 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU148209
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Pectinesterase
Location	Chr7 : 12496023 .. 12496230 (-)
Sequence length	209

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGGGGGATGGTTTTTTAGCTCGAGACATAACCTTTTCAAAACAAAAGCCGGAGCAGCCAACGGCCAAGCTGTAGCTCTCCGTGTTGGCTCAGATCACTCGGCCTTCTACCGATGTAGCATGCTTGCCTACCAAGACACTCTCTACGTTCACTCGAACCGTCAATTCTTCGTCAACTGCATTGTAGCAGGCACAGTCGATTTCATCTTTG

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU148209 vs. Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.7e-21
Identity = 48/65 (73.85%), Postives = 52/65 (80.00%), Query Frame = 2


Query: 14  FSSRHNLFKTKAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCIVAGT 73
           F +R   F+  AGAA  QAVALRVGSD SAFYRC +LAYQD+LYVHSNRQFF+NC +AGT
Sbjct: 96  FLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGT 155

Query: 74  VDFIF 133
           VDFIF
Sbjct: 156 VDFIF 160

Query: 134  193
           
Sbjct: 216  160

Query: 194  209
           
Sbjct: 276  160

[Close]

BLAST of CU148209 vs. Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.2e-20
Identity = 47/65 (72.31%), Postives = 51/65 (78.46%), Query Frame = 2


Query: 14  FSSRHNLFKTKAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCIVAGT 73
           F +R   F+  AG +  QAVALRVG+D SAFY C MLAYQDTLYVHSNRQFFVNC++AGT
Sbjct: 361 FLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGT 420

Query: 74  VDFIF 133
           VDFIF
Sbjct: 421 VDFIF 425

Query: 134  193
           
Sbjct: 481  425

Query: 194  209
           
Sbjct: 541  425

[Close]

BLAST of CU148209 vs. Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.2e-20
Identity = 47/65 (72.31%), Postives = 51/65 (78.46%), Query Frame = 2


Query: 14  FSSRHNLFKTKAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCIVAGT 73
           F +R   F+  AG +  QAVALRVG+D SAFY C MLAYQDTLYVHSNRQFFVNC++AGT
Sbjct: 361 FLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGT 420

Query: 74  VDFIF 133
           VDFIF
Sbjct: 421 VDFIF 425

Query: 134  193
           
Sbjct: 481  425

Query: 194  209
           
Sbjct: 541  425

[Close]

BLAST of CU148209 vs. Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 2.8e-20
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 2


Query: 14  FSSRHNLFKTKAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCIVAGT 73
           F +R   F+  AG +  QAVALRVGSD SAFY C MLAYQDTLYVHSNRQFFV C++AGT
Sbjct: 369 FLARDITFQNTAGPSKHQAVALRVGSDFSAFYNCDMLAYQDTLYVHSNRQFFVKCLIAGT 428

Query: 74  VDFIF 133
           VDFIF
Sbjct: 429 VDFIF 433

Query: 134  193
           
Sbjct: 489  433

Query: 194  209
           
Sbjct: 549  433

[Close]

BLAST of CU148209 vs. Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.3e-20
Identity = 48/63 (76.19%), Postives = 50/63 (79.37%), Query Frame = 2


Query: 20  SRHNLFKTKAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCIVAGTVD 79
           +R   F+  AGA+  QAVAL VGSD SAFYRC MLAYQDTLYVHSNRQFFV C+VAGTVD
Sbjct: 362 ARDITFQNTAGASKHQAVALCVGSDLSAFYRCDMLAYQDTLYVHSNRQFFVQCLVAGTVD 421

Query: 80  FIF 139
           FIF
Sbjct: 422 FIF 424

Query: 140  199
           
Sbjct: 482  424

Query: 200  209
           
Sbjct: 542  424

[Close]

BLAST of CU148209 vs. TrEMBL
Match: A0A0A0K9Y3_CUCSA (Pectinesterase OS=Cucumis sativus GN=Csa_7G343870 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.3e-24
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 2


Query: 14  FSSRHNLFKTKAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCIVAGT 73
           F +R   F+ KAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCIVAGT
Sbjct: 355 FLARDITFQNKAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCIVAGT 414

Query: 74  VDFIF 133
           VDFIF
Sbjct: 415 VDFIF 419

Query: 134  193
           
Sbjct: 475  419

Query: 194  209
           
Sbjct: 535  419

[Close]

BLAST of CU148209 vs. TrEMBL
Match: A0A0A0K6S6_CUCSA (Pectinesterase OS=Cucumis sativus GN=Csa_7G343850 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 9.5e-23
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 2


Query: 14  FSSRHNLFKTKAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCIVAGT 73
           F +R   F+  AG+ANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFV C+VAGT
Sbjct: 361 FLARDITFQNTAGSANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVKCVVAGT 420

Query: 74  VDFIF 133
           VDFIF
Sbjct: 421 VDFIF 425

Query: 134  193
           
Sbjct: 481  425

Query: 194  209
           
Sbjct: 541  425

[Close]

BLAST of CU148209 vs. TrEMBL
Match: K4BN62_SOLLC (Pectinesterase OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-19
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 2


Query: 14  FSSRHNLFKTKAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCIVAGT 73
           F +R   F+  AGA+  QAVALRVGSD SAFYRC MLAYQDTLYVHSNRQFFV C+VAGT
Sbjct: 360 FLARDITFQNTAGASKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFFVQCLVAGT 419

Query: 74  VDFIF 133
           VDFIF
Sbjct: 420 VDFIF 424

Query: 134  193
           
Sbjct: 480  424

Query: 194  209
           
Sbjct: 540  424

[Close]

BLAST of CU148209 vs. TrEMBL
Match: A0A0V0IIK3_SOLCH (Pectinesterase OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-19
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 2


Query: 14  FSSRHNLFKTKAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCIVAGT 73
           F +R   F+  AGA+  QAVALRVGSD SAFYRC MLAYQDTLYVHSNRQFFV C+VAGT
Sbjct: 215 FLARDITFQNTAGASKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFFVQCLVAGT 274

Query: 74  VDFIF 133
           VDFIF
Sbjct: 275 VDFIF 279

Query: 134  193
           
Sbjct: 335  279

Query: 194  209
           
Sbjct: 395  279

[Close]

BLAST of CU148209 vs. TrEMBL
Match: A0A078CFX2_BRANA (Pectinesterase OS=Brassica napus GN=BnaC03g38480D PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.9e-19
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 2


Query: 14  FSSRHNLFKTKAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCIVAGT 73
           F +R   F+  AG +  QAVALRVGSD SAFY+C MLAYQDTLYVHSNRQFFVNC++AGT
Sbjct: 358 FLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMLAYQDTLYVHSNRQFFVNCLIAGT 417

Query: 74  VDFIF 133
           VDFIF
Sbjct: 418 VDFIF 422

Query: 134  193
           
Sbjct: 478  422

Query: 194  209
           
Sbjct: 538  422

[Close]

BLAST of CU148209 vs. NCBI nr
Match: gi|778727001|ref|XP_004139620.2| (PREDICTED: pectinesterase-like [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 3.2e-24
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 2


Query: 14  FSSRHNLFKTKAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCIVAGT 73
           F +R   F+ KAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCIVAGT
Sbjct: 355 FLARDITFQNKAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCIVAGT 414

Query: 74  VDFIF 133
           VDFIF
Sbjct: 415 VDFIF 419

Query: 134  193
           
Sbjct: 475  419

Query: 194  209
           
Sbjct: 535  419

[Close]

BLAST of CU148209 vs. NCBI nr
Match: gi|778726997|ref|XP_011659194.1| (PREDICTED: pectinesterase [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 2.3e-22
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 2


Query: 14  FSSRHNLFKTKAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCIVAGT 73
           F +R   F+  AG+ANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFV C+VAGT
Sbjct: 361 FLARDITFQNTAGSANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVKCVVAGT 420

Query: 74  VDFIF 133
           VDFIF
Sbjct: 421 VDFIF 425

Query: 134  193
           
Sbjct: 481  425

Query: 194  209
           
Sbjct: 541  425

[Close]

BLAST of CU148209 vs. NCBI nr
Match: gi|659116371|ref|XP_008458040.1| (PREDICTED: LOW QUALITY PROTEIN: pectinesterase-like [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-21
Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 2


Query: 14  FSSRHNLFKTKAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCIVAGT 73
           F +R   F+  AG ANGQAVALRVGSDHSAFYRC ML YQDTLYVHSNRQFFVNC+VAGT
Sbjct: 384 FLARDISFENTAGPANGQAVALRVGSDHSAFYRCGMLGYQDTLYVHSNRQFFVNCVVAGT 443

Query: 74  VDFIF 133
           VDF+F
Sbjct: 444 VDFVF 448

Query: 134  193
           
Sbjct: 504  448

Query: 194  209
           
Sbjct: 564  448

[Close]

BLAST of CU148209 vs. NCBI nr
Match: gi|970017444|ref|XP_015069857.1| (PREDICTED: pectinesterase/pectinesterase inhibitor U1 [Solanum pennellii])

HSP 1 Score: 101.3 bits (251), Expect = 7.0e-19
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 2


Query: 14  FSSRHNLFKTKAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCIVAGT 73
           F +R   F+  AGA+  QAVALRVGSD SAFYRC MLAYQDTLYVHSNRQFFV C+VAGT
Sbjct: 360 FLARDITFQNTAGASKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFFVQCLVAGT 419

Query: 74  VDFIF 133
           VDFIF
Sbjct: 420 VDFIF 424

Query: 134  193
           
Sbjct: 480  424

Query: 194  209
           
Sbjct: 540  424

[Close]

BLAST of CU148209 vs. NCBI nr
Match: gi|795881070|ref|NP_001233857.2| (pectinesterase/pectinesterase inhibitor U1 precursor [Solanum lycopersicum])

HSP 1 Score: 101.3 bits (251), Expect = 7.0e-19
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 2


Query: 14  FSSRHNLFKTKAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCIVAGT 73
           F +R   F+  AGA+  QAVALRVGSD SAFYRC MLAYQDTLYVHSNRQFFV C+VAGT
Sbjct: 360 FLARDITFQNTAGASKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFFVQCLVAGT 419

Query: 74  VDFIF 133
           VDFIF
Sbjct: 420 VDFIF 424

Query: 134  193
           
Sbjct: 480  424

Query: 194  209
           
Sbjct: 540  424

The following BLAST results are available for this feature:

BLAST of CU148209 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PME_DAUCA	5.7e-21	73.85	Pectinesterase OS=Daucus carota PE=1 SV=1	[more]
PME3_CITSI	2.2e-20	72.31	Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1	[more]
PME1_CITSI	2.2e-20	72.31	Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1	[more]
PME3_ARATH	2.8e-20	72.31	Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 S...	[more]
PMEU1_SOLLC	6.3e-20	76.19	Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2...	[more]

BLAST of CU148209 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9Y3_CUCSA	1.3e-24	89.23	Pectinesterase OS=Cucumis sativus GN=Csa_7G343870 PE=4 SV=1	[more]
A0A0A0K6S6_CUCSA	9.5e-23	83.08	Pectinesterase OS=Cucumis sativus GN=Csa_7G343850 PE=4 SV=1	[more]
K4BN62_SOLLC	2.9e-19	76.92	Pectinesterase OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0V0IIK3_SOLCH	2.9e-19	76.92	Pectinesterase OS=Solanum chacoense PE=4 SV=1	[more]
A0A078CFX2_BRANA	4.9e-19	73.85	Pectinesterase OS=Brassica napus GN=BnaC03g38480D PE=4 SV=1	[more]

BLAST of CU148209 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778727001\|ref\|XP_004139620.2\|	3.2e-24	89.23	PREDICTED: pectinesterase-like [Cucumis sativus]	[more]
gi\|778726997\|ref\|XP_011659194.1\|	2.3e-22	83.08	PREDICTED: pectinesterase [Cucumis sativus]	[more]
gi\|659116371\|ref\|XP_008458040.1\|	1.2e-21	80.00	PREDICTED: LOW QUALITY PROTEIN: pectinesterase-like [Cucumis melo]	[more]
gi\|970017444\|ref\|XP_015069857.1\|	7.0e-19	76.92	PREDICTED: pectinesterase/pectinesterase inhibitor U1 [Solanum pennellii]	[more]
gi\|795881070\|ref\|NP_001233857.2\|	7.0e-19	76.92	pectinesterase/pectinesterase inhibitor U1 precursor [Solanum lycopersicum]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G343870	Csa7G343870	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0155625	G0155625	EST