CU147029 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU147029
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 20220017 .. 20220269 (+)
Sequence length	252

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GCCAAGCTCGTTGGATTTTTCCTTCTCAAAAGTTTCAAAGTATTGGTAAATGATGGTGACTGCAAGAAGGATTCCTGTCCCTGAACCAATTGCGCCCATAAAATCAGCCAACACGGTGAGGGCACCAATGCATATGCCTCCAAATGCAGCCGCAGTTGGTATGTAGCGGTTCAGCTCTTTCTGTAGGTTTGATTCCCGATGTCCAGGCATCACCATTTGTTGTTCCTGGAATCATAACATATACAGTAAAAA

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU147029 vs. Swiss-Prot
Match: SC61A_DICDI (Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-27
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = -1


Query: 1   QEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 60
           ++QQM M GHR++++ KELNRYIPTAAAFGG+CIGALTV+ADFMGAIGSGTGILLAVTII
Sbjct: 394 KDQQMTMKGHRDTSVIKELNRYIPTAAAFGGLCIGALTVVADFMGAIGSGTGILLAVTII 453

Query: 61  YQYFETFEKEKSNELG 120
           YQYFETF KE+    G
Sbjct: 454 YQYFETFVKEQQELSG 469

Query: 121  180
           
Sbjct: 514  469

Query: 181  229
           
Sbjct: 574  469

[Close]

BLAST of CU147029 vs. Swiss-Prot
Match: S61A1_CANLF (Protein transport protein Sec61 subunit alpha isoform 1 OS=Canis lupus familiaris GN=SEC61A1 PE=1 SV=3)

HSP 1 Score: 121.7 bits (304), Expect = 3.8e-27
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = -1


Query: 13  QEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 72
           +EQQMVM GHRE+++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTII
Sbjct: 395 KEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTII 454

Query: 73  YQYFETFEKEKS 132
           YQYFE F KE+S
Sbjct: 455 YQYFEIFVKEQS 466

Query: 133  192
           
Sbjct: 515  466

Query: 193  229
           
Sbjct: 575  466

[Close]

BLAST of CU147029 vs. Swiss-Prot
Match: S61A1_BOVIN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Bos taurus GN=SEC61A1 PE=2 SV=3)

HSP 1 Score: 121.7 bits (304), Expect = 3.8e-27
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = -1


Query: 13  QEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 72
           +EQQMVM GHRE+++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTII
Sbjct: 395 KEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTII 454

Query: 73  YQYFETFEKEKS 132
           YQYFE F KE+S
Sbjct: 455 YQYFEIFVKEQS 466

Query: 133  192
           
Sbjct: 515  466

Query: 193  229
           
Sbjct: 575  466

[Close]

BLAST of CU147029 vs. Swiss-Prot
Match: S61A1_RAT (Protein transport protein Sec61 subunit alpha isoform 1 OS=Rattus norvegicus GN=Sec61a1 PE=2 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 3.8e-27
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = -1


Query: 13  QEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 72
           +EQQMVM GHRE+++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTII
Sbjct: 395 KEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTII 454

Query: 73  YQYFETFEKEKS 132
           YQYFE F KE+S
Sbjct: 455 YQYFEIFVKEQS 466

Query: 133  192
           
Sbjct: 515  466

Query: 193  229
           
Sbjct: 575  466

[Close]

BLAST of CU147029 vs. Swiss-Prot
Match: S61A1_MOUSE (Protein transport protein Sec61 subunit alpha isoform 1 OS=Mus musculus GN=Sec61a1 PE=1 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 3.8e-27
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = -1


Query: 13  QEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 72
           +EQQMVM GHRE+++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTII
Sbjct: 395 KEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTII 454

Query: 73  YQYFETFEKEKS 132
           YQYFE F KE+S
Sbjct: 455 YQYFEIFVKEQS 466

Query: 133  192
           
Sbjct: 515  466

Query: 193  229
           
Sbjct: 575  466

[Close]

BLAST of CU147029 vs. TrEMBL
Match: A0A0A0L016_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G625570 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.9e-34
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = -1


Query: 1   QEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 60
           +EQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII
Sbjct: 397 KEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 456

Query: 61  YQYFETFEKEKSNELG 120
           YQYFETFEKEKSNELG
Sbjct: 457 YQYFETFEKEKSNELG 472

Query: 121  180
           
Sbjct: 517  472

Query: 181  229
           
Sbjct: 577  472

[Close]

BLAST of CU147029 vs. TrEMBL
Match: A9PG45_POPTR (Transport protein sec61 OS=Populus trichocarpa GN=POPTR_0011s10920g PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.5e-33
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = -1


Query: 1   QEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 60
           +EQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII
Sbjct: 397 KEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 456

Query: 61  YQYFETFEKEKSNELG 120
           YQYFETFEKEK++ELG
Sbjct: 457 YQYFETFEKEKASELG 472

Query: 121  180
           
Sbjct: 517  472

Query: 181  229
           
Sbjct: 577  472

[Close]

BLAST of CU147029 vs. TrEMBL
Match: A0A0L9V2U4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g024200 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.5e-33
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = -1


Query: 1   QEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 60
           +EQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII
Sbjct: 397 KEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 456

Query: 61  YQYFETFEKEKSNELG 120
           YQYFETFEKEK++ELG
Sbjct: 457 YQYFETFEKEKASELG 472

Query: 121  180
           
Sbjct: 517  472

Query: 181  229
           
Sbjct: 577  472

[Close]

BLAST of CU147029 vs. TrEMBL
Match: B9N8W6_POPTR (Transport protein sec61 OS=Populus trichocarpa GN=POPTR_0001s39590g PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.5e-33
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = -1


Query: 1   QEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 60
           +EQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII
Sbjct: 397 KEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 456

Query: 61  YQYFETFEKEKSNELG 120
           YQYFETFEKEK++ELG
Sbjct: 457 YQYFETFEKEKASELG 472

Query: 121  180
           
Sbjct: 517  472

Query: 181  229
           
Sbjct: 577  472

[Close]

BLAST of CU147029 vs. TrEMBL
Match: A0A0S3S9F0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G044300 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.5e-33
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = -1


Query: 1   QEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 60
           +EQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII
Sbjct: 397 KEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 456

Query: 61  YQYFETFEKEKSNELG 120
           YQYFETFEKEK++ELG
Sbjct: 457 YQYFETFEKEKASELG 472

Query: 121  180
           
Sbjct: 517  472

Query: 181  229
           
Sbjct: 577  472

[Close]

BLAST of CU147029 vs. NCBI nr
Match: gi|449456565|ref|XP_004146019.1| (PREDICTED: protein transport protein Sec61 subunit alpha [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 5.5e-34
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = -1


Query: 1   QEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 60
           +EQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII
Sbjct: 397 KEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 456

Query: 61  YQYFETFEKEKSNELG 120
           YQYFETFEKEKSNELG
Sbjct: 457 YQYFETFEKEKSNELG 472

Query: 121  180
           
Sbjct: 517  472

Query: 181  229
           
Sbjct: 577  472

[Close]

BLAST of CU147029 vs. NCBI nr
Match: gi|659127537|ref|XP_008463755.1| (PREDICTED: protein transport protein Sec61 subunit alpha-like [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-33
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = -1


Query: 1   QEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 60
           +EQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII
Sbjct: 397 KEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 456

Query: 61  YQYFETFEKEKSNELG 120
           YQYFETFEKEK+NELG
Sbjct: 457 YQYFETFEKEKANELG 472

Query: 121  180
           
Sbjct: 517  472

Query: 181  229
           
Sbjct: 577  472

[Close]

BLAST of CU147029 vs. NCBI nr
Match: gi|950946385|ref|XP_014494460.1| (PREDICTED: protein transport protein Sec61 subunit alpha-like [Vigna radiata var. radiata])

HSP 1 Score: 148.7 bits (374), Expect = 4.6e-33
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = -1


Query: 1   QEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 60
           +EQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII
Sbjct: 397 KEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 456

Query: 61  YQYFETFEKEKSNELG 120
           YQYFETFEKEK++ELG
Sbjct: 457 YQYFETFEKEKASELG 472

Query: 121  180
           
Sbjct: 517  472

Query: 181  229
           
Sbjct: 577  472

[Close]

BLAST of CU147029 vs. NCBI nr
Match: gi|224114762|ref|XP_002316850.1| (transport protein sec61 [Populus trichocarpa])

HSP 1 Score: 148.7 bits (374), Expect = 4.6e-33
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = -1


Query: 1   QEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 60
           +EQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII
Sbjct: 397 KEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 456

Query: 61  YQYFETFEKEKSNELG 120
           YQYFETFEKEK++ELG
Sbjct: 457 YQYFETFEKEKASELG 472

Query: 121  180
           
Sbjct: 517  472

Query: 181  229
           
Sbjct: 577  472

[Close]

BLAST of CU147029 vs. NCBI nr
Match: gi|920707418|gb|KOM49415.1| (hypothetical protein LR48_Vigan08g024200 [Vigna angularis])

HSP 1 Score: 148.7 bits (374), Expect = 4.6e-33
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = -1


Query: 1   QEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 60
           +EQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII
Sbjct: 397 KEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTII 456

Query: 61  YQYFETFEKEKSNELG 120
           YQYFETFEKEK++ELG
Sbjct: 457 YQYFETFEKEKASELG 472

Query: 121  180
           
Sbjct: 517  472

Query: 181  229
           
Sbjct: 577  472

The following BLAST results are available for this feature:

BLAST of CU147029 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SC61A_DICDI	2.2e-27	77.63	Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec...	[more]
S61A1_CANLF	3.8e-27	81.94	Protein transport protein Sec61 subunit alpha isoform 1 OS=Canis lupus familiari...	[more]
S61A1_BOVIN	3.8e-27	81.94	Protein transport protein Sec61 subunit alpha isoform 1 OS=Bos taurus GN=SEC61A1...	[more]
S61A1_RAT	3.8e-27	81.94	Protein transport protein Sec61 subunit alpha isoform 1 OS=Rattus norvegicus GN=...	[more]
S61A1_MOUSE	3.8e-27	81.94	Protein transport protein Sec61 subunit alpha isoform 1 OS=Mus musculus GN=Sec61...	[more]

BLAST of CU147029 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L016_CUCSA	2.9e-34	98.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G625570 PE=3 SV=1	[more]
A9PG45_POPTR	2.5e-33	96.05	Transport protein sec61 OS=Populus trichocarpa GN=POPTR_0011s10920g PE=2 SV=1	[more]
A0A0L9V2U4_PHAAN	2.5e-33	96.05	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g024200 PE=3 SV=1	[more]
B9N8W6_POPTR	2.5e-33	96.05	Transport protein sec61 OS=Populus trichocarpa GN=POPTR_0001s39590g PE=3 SV=1	[more]
A0A0S3S9F0_PHAAN	2.5e-33	96.05	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G044300 PE=...	[more]

BLAST of CU147029 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456565\|ref\|XP_004146019.1\|	5.5e-34	98.68	PREDICTED: protein transport protein Sec61 subunit alpha [Cucumis sativus]	[more]
gi\|659127537\|ref\|XP_008463755.1\|	1.2e-33	97.37	PREDICTED: protein transport protein Sec61 subunit alpha-like [Cucumis melo]	[more]
gi\|950946385\|ref\|XP_014494460.1\|	4.6e-33	96.05	PREDICTED: protein transport protein Sec61 subunit alpha-like [Vigna radiata var...	[more]
gi\|224114762\|ref\|XP_002316850.1\|	4.6e-33	96.05	transport protein sec61 [Populus trichocarpa]	[more]
gi\|920707418\|gb\|KOM49415.1\|	4.6e-33	96.05	hypothetical protein LR48_Vigan08g024200 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR002208	SecY/SEC61-alpha
IPR023201	SecY_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0015031	protein transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0016020	membrane

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G625570	Csa4G625570	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0144060	G0144060	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002208	SecY/SEC61-alpha family	PANTHER	PTHR10906	SECY/SEC61-ALPHA FAMILY MEMBER	coord: 1..66 score: 2.8
IPR002208	SecY/SEC61-alpha family	PFAM	PF00344	SecY	coord: 1..59 score: 3.5
IPR023201	SecY subunit domain	GENE3D	G3DSA:1.10.3370.10		coord: 1..69 score: 3.0
IPR023201	SecY subunit domain	unknown	SSF103491	Preprotein translocase SecY subunit	coord: 1..66 score: 1.23