CU146534 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU146534
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Dolichyl-diphosphooligosaccharide protein glycosyltransferase subunit STT3A
Location	Chr1 : 4738689 .. 4738912 (-)
Sequence length	223

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTGCATTACTCTTTGGTGCTTTTTACTTTGCTTTCAAAGTATGCAACTCACTGTACATGGGTCACCTCAGAAGCTTATTCATCTCCATCAATTGTCTTGGCTGCACGCGGTGCTCATGGGAACAGGGTTATCTTTGATGACTACCGTGAGGCATACTTTTGGCTCAGACAAAATACTCCTCAAGATGCTAAGATAATGTCGTGGTGGATTATGGTTACCAGAT

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU146534 vs. Swiss-Prot
Match: STT3B_ARATH (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B OS=Arabidopsis thaliana GN=STT3B PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-27
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 1


Query: 19  LFTLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKIM 78
           +F LLS+YA HCTWVT+EAYSSPSIVLAARGAHGNR+IFDDYREAY+WLRQNT  DAKIM
Sbjct: 501 VFYLLSRYAIHCTWVTAEAYSSPSIVLAARGAHGNRIIFDDYREAYYWLRQNTATDAKIM 560

Query: 79  SWW 138
           SWW
Sbjct: 561 SWW 563

Query: 139  198
           
Sbjct: 621  563

Query: 199  208
           
Sbjct: 681  563

[Close]

BLAST of CU146534 vs. Swiss-Prot
Match: STT3B_ORYSJ (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B OS=Oryza sativa subsp. japonica GN=STT3B PE=2 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 7.5e-27
Identity = 54/62 (87.10%), Postives = 55/62 (88.71%), Query Frame = 1


Query: 22  FTLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKIMS 81
           F LLS+YA HCTWVTSEAYSSPSIVLAARG +G RVIFDDYREAY+WLRQNTP DAKIMS
Sbjct: 488 FYLLSRYAVHCTWVTSEAYSSPSIVLAARGHNGGRVIFDDYREAYYWLRQNTPSDAKIMS 547

Query: 82  WW 141
           WW
Sbjct: 548 WW 549

Query: 142  201
           
Sbjct: 608  549

Query: 202  208
           
Sbjct: 668  549

[Close]

BLAST of CU146534 vs. Swiss-Prot
Match: STT3A_BOVIN (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A OS=Bos taurus GN=STT3A PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-22
Identity = 46/65 (70.77%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 13  LVLFTLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAK 72
           LV+   L  Y  H TWVTSEAYSSPSIVL+ARG  G+R+IFDD+REAY+WLR NTP+DAK
Sbjct: 462 LVMAFFLITYTFHSTWVTSEAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPEDAK 521

Query: 73  IMSWW 132
           +MSWW
Sbjct: 522 VMSWW 526

Query: 133  192
           
Sbjct: 582  526

Query: 193  208
           
Sbjct: 642  526

[Close]

BLAST of CU146534 vs. Swiss-Prot
Match: STT3A_HUMAN (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A OS=Homo sapiens GN=STT3A PE=1 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-22
Identity = 46/65 (70.77%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 13  LVLFTLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAK 72
           LV+   L  Y  H TWVTSEAYSSPSIVL+ARG  G+R+IFDD+REAY+WLR NTP+DAK
Sbjct: 462 LVMAFFLITYTFHSTWVTSEAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPEDAK 521

Query: 73  IMSWW 132
           +MSWW
Sbjct: 522 VMSWW 526

Query: 133  192
           
Sbjct: 582  526

Query: 193  208
           
Sbjct: 642  526

[Close]

BLAST of CU146534 vs. Swiss-Prot
Match: STT3A_MOUSE (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A OS=Mus musculus GN=Stt3a PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-22
Identity = 46/65 (70.77%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 13  LVLFTLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAK 72
           LV+   L  Y  H TWVTSEAYSSPSIVL+ARG  G+R+IFDD+REAY+WLR NTP+DAK
Sbjct: 462 LVMAFFLITYTFHSTWVTSEAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPEDAK 521

Query: 73  IMSWW 132
           +MSWW
Sbjct: 522 VMSWW 526

Query: 133  192
           
Sbjct: 582  526

Query: 193  208
           
Sbjct: 642  526

[Close]

BLAST of CU146534 vs. TrEMBL
Match: A0A0A0LT73_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043120 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 7.3e-29
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 1


Query: 22  FTLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKIMS 81
           F LLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKIMS
Sbjct: 514 FYLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKIMS 573

Query: 82  WW 141
           WW
Sbjct: 574 WW 575

Query: 142  201
           
Sbjct: 634  575

Query: 202  208
           
Sbjct: 694  575

[Close]

BLAST of CU146534 vs. TrEMBL
Match: A0A0D2UWD6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G219600 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 1


Query: 22  FTLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKIMS 81
           F LLS+YATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAK+MS
Sbjct: 487 FYLLSRYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKVMS 546

Query: 82  WW 141
           WW
Sbjct: 547 WW 548

Query: 142  201
           
Sbjct: 607  548

Query: 202  208
           
Sbjct: 667  548

[Close]

BLAST of CU146534 vs. TrEMBL
Match: A0A0D2VQ62_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G219600 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 1


Query: 22  FTLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKIMS 81
           F LLS+YATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAK+MS
Sbjct: 487 FYLLSRYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKVMS 546

Query: 82  WW 141
           WW
Sbjct: 547 WW 548

Query: 142  201
           
Sbjct: 607  548

Query: 202  208
           
Sbjct: 667  548

[Close]

BLAST of CU146534 vs. TrEMBL
Match: A0A0D2RR20_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G219600 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 1


Query: 22  FTLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKIMS 81
           F LLS+YATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAK+MS
Sbjct: 487 FYLLSRYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKVMS 546

Query: 82  WW 141
           WW
Sbjct: 547 WW 548

Query: 142  201
           
Sbjct: 607  548

Query: 202  208
           
Sbjct: 667  548

[Close]

BLAST of CU146534 vs. TrEMBL
Match: A0A0D2UWM4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G219600 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 1


Query: 22  FTLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKIMS 81
           F LLS+YATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAK+MS
Sbjct: 487 FYLLSRYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKVMS 546

Query: 82  WW 141
           WW
Sbjct: 547 WW 548

Query: 142  201
           
Sbjct: 607  548

Query: 202  208
           
Sbjct: 667  548

[Close]

BLAST of CU146534 vs. NCBI nr
Match: gi|449439509|ref|XP_004137528.1| (PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-28
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 1


Query: 22  FTLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKIMS 81
           F LLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKIMS
Sbjct: 514 FYLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKIMS 573

Query: 82  WW 141
           WW
Sbjct: 574 WW 575

Query: 142  201
           
Sbjct: 634  575

Query: 202  208
           
Sbjct: 694  575

[Close]

BLAST of CU146534 vs. NCBI nr
Match: gi|659066959|ref|XP_008467302.1| (PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-28
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 1


Query: 22  FTLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKIMS 81
           F LLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKIMS
Sbjct: 514 FYLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKIMS 573

Query: 82  WW 141
           WW
Sbjct: 574 WW 575

Query: 142  201
           
Sbjct: 634  575

Query: 202  208
           
Sbjct: 694  575

[Close]

BLAST of CU146534 vs. NCBI nr
Match: gi|763806227|gb|KJB73165.1| (hypothetical protein B456_011G219600 [Gossypium raimondii])

HSP 1 Score: 132.5 bits (332), Expect = 3.0e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 1


Query: 22  FTLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKIMS 81
           F LLS+YATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAK+MS
Sbjct: 487 FYLLSRYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKVMS 546

Query: 82  WW 141
           WW
Sbjct: 547 WW 548

Query: 142  201
           
Sbjct: 607  548

Query: 202  208
           
Sbjct: 667  548

[Close]

BLAST of CU146534 vs. NCBI nr
Match: gi|728839000|gb|KHG18443.1| (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3 [Gossypium arboreum])

HSP 1 Score: 132.5 bits (332), Expect = 3.0e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 1


Query: 22  FTLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKIMS 81
           F LLS+YATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAK+MS
Sbjct: 446 FYLLSRYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKVMS 505

Query: 82  WW 141
           WW
Sbjct: 506 WW 507

Query: 142  201
           
Sbjct: 566  507

Query: 202  208
           
Sbjct: 626  507

[Close]

BLAST of CU146534 vs. NCBI nr
Match: gi|763806226|gb|KJB73164.1| (hypothetical protein B456_011G219600 [Gossypium raimondii])

HSP 1 Score: 132.5 bits (332), Expect = 3.0e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 1


Query: 22  FTLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKIMS 81
           F LLS+YATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAK+MS
Sbjct: 487 FYLLSRYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPQDAKVMS 546

Query: 82  WW 141
           WW
Sbjct: 547 WW 548

Query: 142  201
           
Sbjct: 607  548

Query: 202  208
           
Sbjct: 667  548

The following BLAST results are available for this feature:

BLAST of CU146534 vs. Swiss-Prot


Match Name	E-value	Identity	Description
STT3B_ARATH	1.5e-27	85.71	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B OS=...	[more]
STT3B_ORYSJ	7.5e-27	87.10	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B OS=...	[more]
STT3A_BOVIN	1.9e-22	70.77	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A OS=...	[more]
STT3A_HUMAN	1.9e-22	70.77	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A OS=...	[more]
STT3A_MOUSE	1.9e-22	70.77	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A OS=...	[more]

BLAST of CU146534 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT73_CUCSA	7.3e-29	98.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043120 PE=4 SV=1	[more]
A0A0D2UWD6_GOSRA	2.1e-28	95.16	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G219600 PE=4 SV=1	[more]
A0A0D2VQ62_GOSRA	2.1e-28	95.16	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G219600 PE=4 SV=1	[more]
A0A0D2RR20_GOSRA	2.1e-28	95.16	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G219600 PE=4 SV=1	[more]
A0A0D2UWM4_GOSRA	2.1e-28	95.16	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G219600 PE=4 SV=1	[more]

BLAST of CU146534 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439509\|ref\|XP_004137528.1\|	1.0e-28	98.39	PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subuni...	[more]
gi\|659066959\|ref\|XP_008467302.1\|	1.0e-28	98.39	PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subuni...	[more]
gi\|763806227\|gb\|KJB73165.1\|	3.0e-28	95.16	hypothetical protein B456_011G219600 [Gossypium raimondii]	[more]
gi\|728839000\|gb\|KHG18443.1\|	3.0e-28	95.16	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3 [Gos...	[more]
gi\|763806226\|gb\|KJB73164.1\|	3.0e-28	95.16	hypothetical protein B456_011G219600 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G043120	Csa1G043120	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0139472	G0139472	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13872	60S RIBOSOMAL PROTEIN L35	coord: 8..69 score: 2.9
None	No IPR available	PANTHER	PTHR13872:SF23	DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT STT3B	coord: 8..69 score: 2.9