CU146143 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU146143
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 10481927 .. 10482190 (-)
Sequence length	265

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ACACTTGCAGTTATAACTATGCTGCCTTGACCTGCTGGAATCAGTGCTTTTGCTGCATGTTTTGTGCCTAAAAAGGCTCCAACTAGGTTGACATTGAGTACGTTTTGGAAGTCTGAATATTCGTTTTCGAGTATGTTGAACTTGAGAGCTCCTGGAATGCCTGCGTTGTTGAACATGATGTCTAGCTTTCCGTATTTGGAAACGGCGGTGTTAACGACTATTTTCGACGTCGGTTTTCTTTCGTTACGTTGCAGTGGACGAAGGA

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU146143 vs. Swiss-Prot
Match: MOMAS_ORYSJ (Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-15
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = -3


Query: 3   VNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKHAAKALIP 62
           V+ AV+++GKLD+MFNNAG+ G   F + E    DF+ VL VNLVG FLGTKHAA+ + P
Sbjct: 83  VDHAVARFGKLDVMFNNAGVSGPPCFRMSECTKEDFERVLAVNLVGPFLGTKHAARVMAP 142

Query: 63  AGQGSIVITAS 122
           A +GSI+ TAS
Sbjct: 143 ARRGSIISTAS 153

Query: 123  182
           
Sbjct: 203  153

Query: 183  216
           
Sbjct: 263  153

[Close]

BLAST of CU146143 vs. Swiss-Prot
Match: SILD_PODPE (Secoisolariciresinol dehydrogenase (Fragment) OS=Podophyllum peltatum PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-14
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = -3


Query: 3   VVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKHAAKALI 62
           +V+T ++K+GKLDIMF N G+     ++ILE    DF+ V+++N+ GAFL  KHAA+ +I
Sbjct: 82  LVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMI 141

Query: 63  PAGQGSIVITAS 122
           PA +GSIV TAS
Sbjct: 142 PAKKGSIVFTAS 153

Query: 123  182
           
Sbjct: 202  153

Query: 183  219
           
Sbjct: 262  153

[Close]

BLAST of CU146143 vs. Swiss-Prot
Match: SILD_FORIN (Secoisolariciresinol dehydrogenase (Fragment) OS=Forsythia intermedia PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.9e-14
Identity = 39/74 (52.70%), Postives = 50/74 (67.57%), Query Frame = -3


Query: 3   KIVVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKHAAKA 62
           K  V+  VS YGKLDIMF+NAGI    +  I++NE +DF+ V +VN+ G FL  KHAA+ 
Sbjct: 80  KNAVDNTVSTYGKLDIMFSNAGISDPNRPRIIDNEKADFERVFSVNVTGVFLCMKHAARV 139

Query: 63  LIPAGQGSIVITAS 122
           +IPA  G+I+ TAS
Sbjct: 140 MIPARSGNIISTAS 153

Query: 123  182
           
Sbjct: 200  153

Query: 183  225
           
Sbjct: 260  153

[Close]

BLAST of CU146143 vs. Swiss-Prot
Match: TPRL2_ERYCB (Tropinone reductase-like 2 OS=Erythroxylum coca PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 9.4e-13
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = -3


Query: 3   VVNTAVSKYGKLDIMFNNAGI--PGALKFNILENEYSDFQNVLNVNLVGAFLGTKHAAKA 62
           +V+T V+KYG+LDIMFNNAGI     L  +++E+E SD   +L+VNL GAFLG KHA + 
Sbjct: 77  LVDTTVAKYGRLDIMFNNAGIIEGQGLPVSVVESEKSDLDRLLSVNLGGAFLGAKHATRV 136

Query: 63  LIPAGQGSIVITAS 122
           ++   +G I+ T+S
Sbjct: 137 MVQQRKGCILFTSS 150

Query: 123  182
           
Sbjct: 197  150

Query: 183  219
           
Sbjct: 257  150

[Close]

BLAST of CU146143 vs. Swiss-Prot
Match: TPRL1_ERYCB (Tropinone reductase-like 1 OS=Erythroxylum coca PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 9.4e-13
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = -3


Query: 3   VVNTAVSKYGKLDIMFNNAGI--PGALKFNILENEYSDFQNVLNVNLVGAFLGTKHAAKA 62
           +V+T V+KYG+LDIMFNNAGI     L  +++E+E SD   +L+VNL GAFLG KHA + 
Sbjct: 77  LVDTTVAKYGRLDIMFNNAGIIEGQGLPVSVVESEKSDLDRLLSVNLGGAFLGAKHATRV 136

Query: 63  LIPAGQGSIVITAS 122
           ++   +G I+ T+S
Sbjct: 137 MVQQRKGCILFTSS 150

Query: 123  182
           
Sbjct: 197  150

Query: 183  219
           
Sbjct: 257  150

[Close]

BLAST of CU146143 vs. TrEMBL
Match: A0A0A0LT69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168890 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.1e-31
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = -3


Query: 3   VVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKHAAKALI 62
           VVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKHAAKA+I
Sbjct: 80  VVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKHAAKAMI 139

Query: 63  PAGQGSIVITAS 122
           PAGQGSIVITAS
Sbjct: 140 PAGQGSIVITAS 151

Query: 123  182
           
Sbjct: 200  151

Query: 183  219
           
Sbjct: 260  151

[Close]

BLAST of CU146143 vs. TrEMBL
Match: F6HHC6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g01020 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.3e-20
Identity = 49/71 (69.01%), Postives = 61/71 (85.92%), Query Frame = -3


Query: 3   VNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKHAAKALIP 62
           +N AV+KYGKLDIMFNNAGI G  K NIL+N+ ++F+ +LNVN+VGAFLGTKHAA+ +IP
Sbjct: 142 INVAVAKYGKLDIMFNNAGIVGESKPNILDNDKTEFEKILNVNVVGAFLGTKHAARVMIP 201

Query: 63  AGQGSIVITAS 122
           AG GSI+ TAS
Sbjct: 202 AGNGSIITTAS 212

Query: 123  182
           
Sbjct: 262  212

Query: 183  216
           
Sbjct: 322  212

[Close]

BLAST of CU146143 vs. TrEMBL
Match: M1CPL5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028021 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-19
Identity = 49/74 (66.22%), Postives = 61/74 (82.43%), Query Frame = -3


Query: 3   KIVVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKHAAKA 62
           K VVNTAVSKYGKLDIM+NNAGI   +K NIL+NE S+F+ V+N+NL+G F+G K AA+ 
Sbjct: 74  KNVVNTAVSKYGKLDIMYNNAGIVDEIKSNILDNEKSEFEKVININLIGTFVGIKEAARV 133

Query: 63  LIPAGQGSIVITAS 122
           +IP GQGSI+ TAS
Sbjct: 134 MIPRGQGSIISTAS 147

Query: 123  182
           
Sbjct: 194  147

Query: 183  225
           
Sbjct: 254  147

[Close]

BLAST of CU146143 vs. TrEMBL
Match: V7AGR2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G096800g PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.8e-19
Identity = 51/71 (71.83%), Postives = 60/71 (84.51%), Query Frame = -3


Query: 3   VNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKHAAKALIP 62
           VNT VSK+GKLD MFNNAGI GA K +IL+N  S+F+ V+NVNLVG FLGTKHAA+ +IP
Sbjct: 80  VNTVVSKHGKLDTMFNNAGITGANKTSILDNTKSEFEAVINVNLVGVFLGTKHAARVMIP 139

Query: 63  AGQGSIVITAS 122
           AG+GSIV TAS
Sbjct: 140 AGRGSIVNTAS 150

Query: 123  182
           
Sbjct: 200  150

Query: 183  216
           
Sbjct: 260  150

[Close]

BLAST of CU146143 vs. TrEMBL
Match: A0A067JQC3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22863 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.8e-19
Identity = 49/71 (69.01%), Postives = 63/71 (88.73%), Query Frame = -3


Query: 3   VNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKHAAKALIP 62
           VN+AVSKYG+LDIMFNNAGI GA+K NIL+NE ++F+ +++VNLVGAFLGTKHAA+ +IP
Sbjct: 81  VNSAVSKYGELDIMFNNAGIVGAVKPNILDNEKAEFEKIISVNLVGAFLGTKHAARVMIP 140

Query: 63  AGQGSIVITAS 122
             +GSI+ TAS
Sbjct: 141 NRKGSIMTTAS 151

Query: 123  182
           
Sbjct: 201  151

Query: 183  216
           
Sbjct: 261  151

[Close]

BLAST of CU146143 vs. NCBI nr
Match: gi|449443650|ref|XP_004139590.1| (PREDICTED: secoisolariciresinol dehydrogenase [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 4.5e-31
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = -3


Query: 3   VVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKHAAKALI 62
           VVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKHAAKA+I
Sbjct: 80  VVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKHAAKAMI 139

Query: 63  PAGQGSIVITAS 122
           PAGQGSIVITAS
Sbjct: 140 PAGQGSIVITAS 151

Query: 123  182
           
Sbjct: 200  151

Query: 183  219
           
Sbjct: 260  151

[Close]

BLAST of CU146143 vs. NCBI nr
Match: gi|1009113235|ref|XP_015872388.1| (PREDICTED: secoisolariciresinol dehydrogenase-like [Ziziphus jujuba])

HSP 1 Score: 108.2 bits (269), Expect = 7.2e-21
Identity = 52/71 (73.24%), Postives = 63/71 (88.73%), Query Frame = -3


Query: 3   VNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKHAAKALIP 62
           VNTA+SKYGKLDIMFNNAGI  ALK NI++N+ ++F+ V+ VNLVGAFLGTKHAA+ +IP
Sbjct: 87  VNTAISKYGKLDIMFNNAGILDALKPNIVDNDKAEFEKVIGVNLVGAFLGTKHAARVMIP 146

Query: 63  AGQGSIVITAS 122
           AGQGSI+ TAS
Sbjct: 147 AGQGSIISTAS 157

Query: 123  182
           
Sbjct: 207  157

Query: 183  216
           
Sbjct: 267  157

[Close]

BLAST of CU146143 vs. NCBI nr
Match: gi|296084866|emb|CBI28275.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 105.1 bits (261), Expect = 6.1e-20
Identity = 49/71 (69.01%), Postives = 61/71 (85.92%), Query Frame = -3


Query: 3   VNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKHAAKALIP 62
           +N AV+KYGKLDIMFNNAGI G  K NIL+N+ ++F+ +LNVN+VGAFLGTKHAA+ +IP
Sbjct: 676 INVAVAKYGKLDIMFNNAGIVGESKPNILDNDKTEFEKILNVNVVGAFLGTKHAARVMIP 735

Query: 63  AGQGSIVITAS 122
           AG GSI+ TAS
Sbjct: 736 AGNGSIITTAS 746

Query: 123  182
           
Sbjct: 796  746

Query: 183  216
           
Sbjct: 856  746

[Close]

BLAST of CU146143 vs. NCBI nr
Match: gi|225464860|ref|XP_002272206.1| (PREDICTED: secoisolariciresinol dehydrogenase-like [Vitis vinifera])

HSP 1 Score: 105.1 bits (261), Expect = 6.1e-20
Identity = 49/71 (69.01%), Postives = 61/71 (85.92%), Query Frame = -3


Query: 3   VNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKHAAKALIP 62
           +N AV+KYGKLDIMFNNAGI G  K NIL+N+ ++F+ +LNVN+VGAFLGTKHAA+ +IP
Sbjct: 83  INVAVAKYGKLDIMFNNAGIVGESKPNILDNDKTEFEKILNVNVVGAFLGTKHAARVMIP 142

Query: 63  AGQGSIVITAS 122
           AG GSI+ TAS
Sbjct: 143 AGNGSIITTAS 153

Query: 123  182
           
Sbjct: 203  153

Query: 183  216
           
Sbjct: 263  153

[Close]

BLAST of CU146143 vs. NCBI nr
Match: gi|743824400|ref|XP_011022234.1| (PREDICTED: secoisolariciresinol dehydrogenase-like [Populus euphratica])

HSP 1 Score: 104.8 bits (260), Expect = 8.0e-20
Identity = 51/71 (71.83%), Postives = 61/71 (85.92%), Query Frame = -3


Query: 3   VNTAVSKYGKLDIMFNNAGIPGALKFNILENEYSDFQNVLNVNLVGAFLGTKHAAKALIP 62
           VNTAVSKYGKLDIMFNNAGI G  K NILEN+ ++F+ ++ VNLVGAFLGTKHAA+ +IP
Sbjct: 82  VNTAVSKYGKLDIMFNNAGIGGTPKTNILENDKAEFEKIICVNLVGAFLGTKHAARVMIP 141

Query: 63  AGQGSIVITAS 122
           A +GSI+ TAS
Sbjct: 142 ARRGSIITTAS 152

Query: 123  182
           
Sbjct: 202  152

Query: 183  216
           
Sbjct: 262  152

The following BLAST results are available for this feature:

BLAST of CU146143 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MOMAS_ORYSJ	1.2e-15	57.75	Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1	[more]
SILD_PODPE	1.7e-14	51.39	Secoisolariciresinol dehydrogenase (Fragment) OS=Podophyllum peltatum PE=1 SV=1	[more]
SILD_FORIN	2.9e-14	52.70	Secoisolariciresinol dehydrogenase (Fragment) OS=Forsythia intermedia PE=1 SV=1	[more]
TPRL2_ERYCB	9.4e-13	50.00	Tropinone reductase-like 2 OS=Erythroxylum coca PE=2 SV=1	[more]
TPRL1_ERYCB	9.4e-13	50.00	Tropinone reductase-like 1 OS=Erythroxylum coca PE=2 SV=1	[more]

BLAST of CU146143 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT69_CUCSA	3.1e-31	98.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168890 PE=4 SV=1	[more]
F6HHC6_VITVI	4.3e-20	69.01	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g01020 PE=4 SV=...	[more]
M1CPL5_SOLTU	1.6e-19	66.22	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028021 PE=4 SV=1	[more]
V7AGR2_PHAVU	2.8e-19	71.83	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G096800g PE=4 SV=1	[more]
A0A067JQC3_JATCU	2.8e-19	69.01	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22863 PE=4 SV=1	[more]

BLAST of CU146143 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443650\|ref\|XP_004139590.1\|	4.5e-31	98.61	PREDICTED: secoisolariciresinol dehydrogenase [Cucumis sativus]	[more]
gi\|1009113235\|ref\|XP_015872388.1\|	7.2e-21	73.24	PREDICTED: secoisolariciresinol dehydrogenase-like [Ziziphus jujuba]	[more]
gi\|296084866\|emb\|CBI28275.3\|	6.1e-20	69.01	unnamed protein product [Vitis vinifera]	[more]
gi\|225464860\|ref\|XP_002272206.1\|	6.1e-20	69.01	PREDICTED: secoisolariciresinol dehydrogenase-like [Vitis vinifera]	[more]
gi\|743824400\|ref\|XP_011022234.1\|	8.0e-20	71.83	PREDICTED: secoisolariciresinol dehydrogenase-like [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR002347	SDR_fam
IPR016040	NAD(P)-bd_dom

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G168890	Csa1G168890	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0135376	G0135376	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00081	GDHRDH	coord: 26..37 score: 7.2E-6coord: 75..89 score: 7.
IPR002347	Short-chain dehydrogenase/reductase SDR	PANTHER	PTHR24322	FAMILY NOT NAMED	coord: 18..84 score: 1.4
IPR002347	Short-chain dehydrogenase/reductase SDR	PFAM	PF00106	adh_short	coord: 16..89 score: 4.2
IPR016040	NAD(P)-binding domain	GENE3D	G3DSA:3.40.50.720		coord: 17..89 score: 1.6
IPR016040	NAD(P)-binding domain	unknown	SSF51735	NAD(P)-binding Rossmann-fold domains	coord: 17..89 score: 1.24
None	No IPR available	PANTHER	PTHR24322:SF600	SUBFAMILY NOT NAMED	coord: 18..84 score: 1.4