CU146045 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU146045
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPentatricopeptide repeat-containing protein, putative
LocationChr1 : 26491497 .. 26491703 (-)
Sequence length209
The following sequences are available for this feature:

transcribed_cluster sequence

AATGATGAATATCTCTAGAGCTCATGGGTTGATGGAGCTTGGTGATCGTTGTTTTGAGCTTGTTGAGCATCTTGATTCTTCTCGCTTAAATGAGCAGTCAAAAGCTGGCCTTCTACCTGTAAAAGCTTCTGACCTTGAAAAAGAGAGAGAGAAAGAAAAAATTAGCTAATACGAAAATCTTTTAGAAGTGAGGAGCCGAGTACATGAAT
Library categoryESTs
gynoecious flower library1
BLAST of CU146045 vs. Swiss-Prot
Match: PP170_ARATH (Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 8.3e-12
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 2

Query: 2   MMNISRAHGLMELGDRCFELVEHLDSSRLNEQSKAGLLPVKASDLEKEREKEK 61
           +MN+SR HG +ELGD C E+VE LD +RLN+QS+ G +PVKASD+EKE  K++
Sbjct: 429 LMNLSRVHGNLELGDYCAEVVEFLDPTRLNKQSREGFIPVKASDVEKESLKKR 481

Query: 62  121
           
Sbjct: 489 481

Query: 122 161
           
Sbjct: 549 481

BLAST of CU146045 vs. Swiss-Prot
Match: PP346_ARATH (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.3e-12
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 2

Query: 2   MMNISRAHGLMELGDRCFELVEHLDSSRLNEQSKAGLLPVKASDLEKER 61
           +MN+SR HG + LGDRC ++VE LD+SRLN++SKAGL+PVK+SDL KE+
Sbjct: 354 LMNLSRVHGDLILGDRCQDMVEQLDASRLNKESKAGLVPVKSSDLVKEK 402

Query: 62  121
           
Sbjct: 414 402

Query: 122 149
           
Sbjct: 474 402

BLAST of CU146045 vs. Swiss-Prot
Match: PPR63_ARATH (Pentatricopeptide repeat-containing protein At1g29710, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H67 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.8e-09
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 2

Query: 2   MMNISRAHGLMELGDRCFELVEHLDSSRLNEQSKAGLLPVKASDLEKEREKEKIS*Y 61
           +MN+SR HG +ELGDRC ELVE LD++RL++ S AGL+  KASD  K+    +   Y
Sbjct: 294 LMNLSRVHGDVELGDRCAELVEKLDATRLDKVSSAGLVATKASDFVKKEPSTRSEPY 350

Query: 62  121
           
Sbjct: 354 350

Query: 122 173
           
Sbjct: 414 350

BLAST of CU146045 vs. Swiss-Prot
Match: PP183_ARATH (Pentatricopeptide repeat-containing protein At2g34370, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H25 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-06
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 2

Query: 2   MMNISRAHGLMELGDRCFELVEHLDSSRLNEQSKAGLLPVKASDLEKEREKE 61
           +MN+    G +ELGDR  EL++ LD+SR++++S AGL+  KASD   E+ KE
Sbjct: 283 LMNLCWVQGYLELGDRFAELIKKLDASRMSKESNAGLVAAKASDSAMEKLKE 334

Query: 62  121
           
Sbjct: 343 334

Query: 122 158
           
Sbjct: 403 334

BLAST of CU146045 vs. TrEMBL
Match: A0A0A0M061_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G659600 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.0e-25
Identity = 63/69 (91.30%), Postives = 66/69 (95.65%), Query Frame = 2

Query: 2   MMNISRAHGLMELGDRCFELVEHLDSSRLNEQSKAGLLPVKASDLEKEREKEKIS*YENL 61
           MMNISRAHGLMELGDRCFELVEHLDSSRLNEQSKAGLLPVKASDLEKEREK+K++   NL
Sbjct: 543 MMNISRAHGLMELGDRCFELVEHLDSSRLNEQSKAGLLPVKASDLEKEREKKKLA-NRNL 602

Query: 62  LEVRSRVHE 121
           LEVRSRVHE
Sbjct: 603 LEVRSRVHE 610

Query: 122 181
           
Sbjct: 663 610

Query: 182 209
           
Sbjct: 723 610

BLAST of CU146045 vs. TrEMBL
Match: F6H3U1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g05070 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.4e-19
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 2

Query: 2   MMNISRAHGLMELGDRCFELVEHLDSSRLNEQSKAGLLPVKASDLEKEREKEKIS*YENL 61
           +MNI R  G ME+GDRC ELVEHL+ SRL EQSKAGL+PVKASDLEKE+EK+K++  +NL
Sbjct: 619 LMNICRVQGNMEIGDRCAELVEHLEPSRLTEQSKAGLVPVKASDLEKEKEKKKLA-SQNL 678

Query: 62  LEVRSRVHE 121
           LEVRSRVHE
Sbjct: 679 LEVRSRVHE 686

Query: 122 181
           
Sbjct: 739 686

Query: 182 209
           
Sbjct: 799 686

BLAST of CU146045 vs. TrEMBL
Match: A5AQE7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020760 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.4e-19
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 2

Query: 2   MMNISRAHGLMELGDRCFELVEHLDSSRLNEQSKAGLLPVKASDLEKEREKEKIS*YENL 61
           +MNI R  G ME+GDRC ELVEHL+ SRL EQSKAGL+PVKASDLEKE+EK+K++  +NL
Sbjct: 619 LMNICRVQGNMEIGDRCAELVEHLEPSRLTEQSKAGLVPVKASDLEKEKEKKKLA-SQNL 678

Query: 62  LEVRSRVHE 121
           LEVRSRVHE
Sbjct: 679 LEVRSRVHE 686

Query: 122 181
           
Sbjct: 739 686

Query: 182 209
           
Sbjct: 799 686

BLAST of CU146045 vs. TrEMBL
Match: M5XL53_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003215mg PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.0e-18
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 2

Query: 2   MMNISRAHGLMELGDRCFELVEHLDSSRLNEQSKAGLLPVKASDLEKEREKEKIS*YENL 61
           +MN+ R HG +ELGDRC ELVE LD+S LNEQSKAGL+PVK SDL KE+EK+K++  +NL
Sbjct: 404 LMNLCRVHGQLELGDRCAELVEQLDASSLNEQSKAGLVPVKDSDLVKEKEKKKLA-AQNL 463

Query: 62  LEVRSRVHE 121
           LEVRSRVHE
Sbjct: 464 LEVRSRVHE 471

Query: 122 181
           
Sbjct: 524 471

Query: 182 209
           
Sbjct: 584 471

BLAST of CU146045 vs. TrEMBL
Match: B9I9F0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s11190g PE=4 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 3.5e-17
Identity = 47/69 (68.12%), Postives = 58/69 (84.06%), Query Frame = 2

Query: 2   MMNISRAHGLMELGDRCFELVEHLDSSRLNEQSKAGLLPVKASDLEKEREKEKIS*YENL 61
           +MN+ RAHG +ELGDRC EL+E LD SRLNEQS AGL+PVKASD+ KE++K+  S  +NL
Sbjct: 279 LMNLCRAHGHLELGDRCAELIEQLDPSRLNEQSNAGLVPVKASDIAKEKKKKTAS--QNL 338

Query: 62  LEVRSRVHE 121
           L+VRSRVHE
Sbjct: 339 LDVRSRVHE 345

Query: 122 181
           
Sbjct: 399 345

Query: 182 209
           
Sbjct: 459 345

BLAST of CU146045 vs. NCBI nr
Match: gi|778664160|ref|XP_011660234.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-24
Identity = 63/69 (91.30%), Postives = 66/69 (95.65%), Query Frame = 2

Query: 2   MMNISRAHGLMELGDRCFELVEHLDSSRLNEQSKAGLLPVKASDLEKEREKEKIS*YENL 61
           MMNISRAHGLMELGDRCFELVEHLDSSRLNEQSKAGLLPVKASDLEKEREK+K++   NL
Sbjct: 543 MMNISRAHGLMELGDRCFELVEHLDSSRLNEQSKAGLLPVKASDLEKEREKKKLA-NRNL 602

Query: 62  LEVRSRVHE 121
           LEVRSRVHE
Sbjct: 603 LEVRSRVHE 610

Query: 122 181
           
Sbjct: 663 610

Query: 182 209
           
Sbjct: 723 610

BLAST of CU146045 vs. NCBI nr
Match: gi|659086007|ref|XP_008443720.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-23
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 2

Query: 2   MMNISRAHGLMELGDRCFELVEHLDSSRLNEQSKAGLLPVKASDLEKEREKEKIS*YENL 61
           MMNI+RAHGLMELGDRCFELVEHLD SRLNEQSKAGLLP+KASDLEKEREK+K++   NL
Sbjct: 560 MMNIARAHGLMELGDRCFELVEHLDPSRLNEQSKAGLLPIKASDLEKEREKKKLA-NRNL 619

Query: 62  LEVRSRVHE 121
           LEVRSRVHE
Sbjct: 620 LEVRSRVHE 627

Query: 122 181
           
Sbjct: 680 627

Query: 182 209
           
Sbjct: 740 627

BLAST of CU146045 vs. NCBI nr
Match: gi|147856667|emb|CAN80315.1| (hypothetical protein VITISV_020760 [Vitis vinifera])

HSP 1 Score: 99.0 bits (245), Expect = 3.5e-18
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 2

Query: 2   MMNISRAHGLMELGDRCFELVEHLDSSRLNEQSKAGLLPVKASDLEKEREKEKIS*YENL 61
           +MNI R  G ME+GDRC ELVEHL+ SRL EQSKAGL+PVKASDLEKE+EK+K++  +NL
Sbjct: 619 LMNICRVQGNMEIGDRCAELVEHLEPSRLTEQSKAGLVPVKASDLEKEKEKKKLA-SQNL 678

Query: 62  LEVRSRVHE 121
           LEVRSRVHE
Sbjct: 679 LEVRSRVHE 686

Query: 122 181
           
Sbjct: 739 686

Query: 182 209
           
Sbjct: 799 686

BLAST of CU146045 vs. NCBI nr
Match: gi|225430210|ref|XP_002282464.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial [Vitis vinifera])

HSP 1 Score: 99.0 bits (245), Expect = 3.5e-18
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 2

Query: 2   MMNISRAHGLMELGDRCFELVEHLDSSRLNEQSKAGLLPVKASDLEKEREKEKIS*YENL 61
           +MNI R  G ME+GDRC ELVEHL+ SRL EQSKAGL+PVKASDLEKE+EK+K++  +NL
Sbjct: 619 LMNICRVQGNMEIGDRCAELVEHLEPSRLTEQSKAGLVPVKASDLEKEKEKKKLA-SQNL 678

Query: 62  LEVRSRVHE 121
           LEVRSRVHE
Sbjct: 679 LEVRSRVHE 686

Query: 122 181
           
Sbjct: 739 686

Query: 182 209
           
Sbjct: 799 686

BLAST of CU146045 vs. NCBI nr
Match: gi|645223742|ref|XP_008218777.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial [Prunus mume])

HSP 1 Score: 95.5 bits (236), Expect = 3.8e-17
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 2

Query: 2   MMNISRAHGLMELGDRCFELVEHLDSSRLNEQSKAGLLPVKASDLEKEREKEKIS*YENL 61
           +MN+ R HG +ELGDRC ELVE LD+S LNEQSKAGL+PVK SDL KE+EK+K++  +NL
Sbjct: 523 LMNLCRVHGQLELGDRCAELVEQLDASSLNEQSKAGLVPVKDSDLVKEKEKKKLA-AQNL 582

Query: 62  LEVRSRVHE 121
           LEVRSRVHE
Sbjct: 583 LEVRSRVHE 590

Query: 122 181
           
Sbjct: 643 590

Query: 182 209
           
Sbjct: 703 590

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PP170_ARATH8.3e-1260.38Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN... [more]
PP346_ARATH8.3e-1265.31Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidop... [more]
PPR63_ARATH3.8e-0952.63Pentatricopeptide repeat-containing protein At1g29710, mitochondrial OS=Arabidop... [more]
PP183_ARATH1.8e-0648.08Pentatricopeptide repeat-containing protein At2g34370, mitochondrial OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A0A0M061_CUCSA2.0e-2591.30Uncharacterized protein OS=Cucumis sativus GN=Csa_1G659600 PE=4 SV=1[more]
F6H3U1_VITVI6.4e-1973.91Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g05070 PE=4 SV=... [more]
A5AQE7_VITVI6.4e-1973.91Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020760 PE=4 SV=1[more]
M5XL53_PRUPE7.0e-1871.01Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003215mg PE=4 SV=1[more]
B9I9F0_POPTR3.5e-1768.12Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s11190g PE=4 SV=2[more]
Match NameE-valueIdentityDescription
gi|778664160|ref|XP_011660234.1|1.1e-2491.30PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial ... [more]
gi|659086007|ref|XP_008443720.1|1.2e-2386.96PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-... [more]
gi|147856667|emb|CAN80315.1|3.5e-1873.91hypothetical protein VITISV_020760 [Vitis vinifera][more]
gi|225430210|ref|XP_002282464.1|3.5e-1873.91PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial ... [more]
gi|645223742|ref|XP_008218777.1|3.8e-1771.01PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial ... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G659600Csa1G659600gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0134588G0134588EST