CU145246 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU145246
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionTwo-pore potassium channel 1
LocationChr1 : 10766730 .. 10767015 (-)
Sequence length280
The following sequences are available for this feature:

transcribed_cluster sequence

TTCTGATAAGAAGAATTCTCTCCTGAGAAGGAAATCTAACCGACATGGTAGTTTTTCACATTCAGTAGAAAATAACAATCAACCACAAAATTACGATGTAGTGTCTCATCAACGTATTGCTGTTTCACAAGTTAGTTTTAGGAAAGTATTTGTTCTTCTGGCGACTTATTTGGGAGGAGGCACATTTTGTTTTTTCCTGTTCGGGATCAGATCACTGGAAAGAAACAATGGGGTTTCGATTCCATTTACTTTTGTGTTGTGACAATGACCACGTTGGGTA
Library categoryESTs
gynoecious flower library1
BLAST of CU145246 vs. TrEMBL
Match: A0A0A0LW31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173170 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.8e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 2

Query: 2   SDKKNSLLRRKSNRHGSFSHSVENNNQPQNYDVVSHQRIAVSQVSFRKVFVLLATY 61
           SDKKNSLLRRKSNRHGSFSHSVENNNQPQNYDVVSHQRIAVSQVSFRKVFVLLATY
Sbjct: 17  SDKKNSLLRRKSNRHGSFSHSVENNNQPQNYDVVSHQRIAVSQVSFRKVFVLLATY 72

Query: 62  121
           
Sbjct: 77  72

Query: 122 170
           
Sbjct: 137 72

BLAST of CU145246 vs. TrEMBL
Match: A0A0A0LW31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173170 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 6.6e-03
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 1

Query: 190 FFPVRDQITGKKQWGF-DSIYFCVVTMTTLG 249
           FF VRDQITGKK  G  DSIYFCVVTMTT+G
Sbjct: 80  FFLVRDQITGKKTNGVVDSIYFCVVTMTTVG 110

Query: 250 280
           
Sbjct: 140 110

BLAST of CU145246 vs. NCBI nr
Match: gi|449443674|ref|XP_004139602.1| (PREDICTED: two-pore potassium channel 1-like [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-20
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 2

Query: 2   SDKKNSLLRRKSNRHGSFSHSVENNNQPQNYDVVSHQRIAVSQVSFRKVFVLLATY 61
           SDKKNSLLRRKSNRHGSFSHSVENNNQPQNYDVVSHQRIAVSQVSFRKVFVLLATY
Sbjct: 17  SDKKNSLLRRKSNRHGSFSHSVENNNQPQNYDVVSHQRIAVSQVSFRKVFVLLATY 72

Query: 62  121
           
Sbjct: 77  72

Query: 122 170
           
Sbjct: 137 72

BLAST of CU145246 vs. NCBI nr
Match: gi|659128596|ref|XP_008464279.1| (PREDICTED: LOW QUALITY PROTEIN: two-pore potassium channel 1-like [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-15
Identity = 49/56 (87.50%), Postives = 54/56 (96.43%), Query Frame = 2

Query: 2   SDKKNSLLRRKSNRHGSFSHSVENNNQPQNYDVVSHQRIAVSQVSFRKVFVLLATY 61
           SDK+NSLLRRKSNRHGSFSHSVE NN+PQNYD V+HQR+AVSQ+SFRKVFVLLATY
Sbjct: 17  SDKRNSLLRRKSNRHGSFSHSVE-NNKPQNYD-VAHQRVAVSQISFRKVFVLLATY 70

Query: 62  121
           
Sbjct: 77  70

Query: 122 170
           
Sbjct: 137 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LW31_CUCSA9.8e-23100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173170 PE=4 SV=1[more]
A0A0A0LW31_CUCSA6.6e-0380.65Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173170 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449443674|ref|XP_004139602.1|1.0e-20100.00PREDICTED: two-pore potassium channel 1-like [Cucumis sativus][more]
gi|659128596|ref|XP_008464279.1|1.7e-1587.50PREDICTED: LOW QUALITY PROTEIN: two-pore potassium channel 1-like [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G173170Csa1G173170gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0126862G0126862EST