CU145214 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU145214
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	F-box protein PP2-B1
Location	Chr1 : 15295447 .. 15295617 (-)
Sequence length	183

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GCTTGAGAAACAGGTTTGGAGAGGTAGTCGTGCTACTCGACATATGTTTGCTTGAAGTAAGTGGAAAGATAAGTTGCAGAATGTTGTCTCCTGCAACAACTTATGCAGCTTACTTTGTGTTTAAGATGAAGAAACGCAAGTACTATGGATTCAATCTTGATCCTGTGGAGCCATGCGGGATTG

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU145214 vs. Swiss-Prot
Match: PP2B1_ARATH (F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-07
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 3


Query: 9   NRFGEVVVLLDICLLEVSGKISCRMLSPATTYAAYFVFKMKKRKYYGFNLDPVE 68
           ++F +V  L ++C  EV GKISC MLS  T Y+ Y VFK    + YGF+L PVE
Sbjct: 151 SKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVE 204

Query: 69   128
           
Sbjct: 211  204

Query: 129  171
           
Sbjct: 271  204

[Close]

BLAST of CU145214 vs. Swiss-Prot
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-06
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 3


Query: 9   NRFGEVVVLLDICLLEVSGKISCRMLSPATTYAAYFVFKMKKR 68
           +RF ++  LLD+C  E+ GK S R+LSP T Y+AY VFK K R
Sbjct: 180 SRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDR 222

Query: 69   128
           
Sbjct: 240  222

Query: 129  138
           
Sbjct: 300  222

[Close]

BLAST of CU145214 vs. Swiss-Prot
Match: P2B12_ARATH (Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.0e-06
Identity = 26/54 (48.15%), Postives = 33/54 (61.11%), Query Frame = 3


Query: 9   NRFGEVVVLLDICLLEVSGKISCRMLSPATTYAAYFVFKMKKRKYYGFNLDPVE 68
           +RF EV  LL +C  E+ GKIS  +LS AT Y+AY VFK ++   +GF   P+E
Sbjct: 122 SRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLPLE 175

Query: 69   128
           
Sbjct: 182  175

Query: 129  171
           
Sbjct: 242  175

[Close]

BLAST of CU145214 vs. TrEMBL
Match: A0A0A0LZQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421910 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.3e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 3


Query: 3   LRNRFGEVVVLLDICLLEVSGKISCRMLSPATTYAAYFVFKMKKRKYYGFNLDPVE 62
           LRNRFGEVVVLLDICLLEVSGKISCRMLSPATTYAAYFVFKMKKRKYYGFNLDPVE
Sbjct: 153 LRNRFGEVVVLLDICLLEVSGKISCRMLSPATTYAAYFVFKMKKRKYYGFNLDPVE 208

Query: 63   122
           
Sbjct: 213  208

Query: 123  171
           
Sbjct: 273  208

[Close]

BLAST of CU145214 vs. TrEMBL
Match: A0A0A0LWS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421890 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.8e-12
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 3


Query: 9   NRFGEVVVLLDICLLEVSGKISCRMLSPATTYAAYFVFKMKKRKYYGFNL 68
           +RF EV VLL++  LE+ GK+SC+MLSPATTYAAYFVFKM +R+YYGF++
Sbjct: 140 SRFAEVAVLLNVWWLEIKGKLSCKMLSPATTYAAYFVFKMDERRYYGFDI 189

Query: 69   128
           
Sbjct: 200  189

Query: 129  159
           
Sbjct: 260  189

[Close]

BLAST of CU145214 vs. TrEMBL
Match: A0A0A0LU29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421900 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.8e-10
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 3


Query: 9   NRFGEVVVLLDICLLEVSGKISCRMLSPATTYAAYFVFKMKKRKYYGFNLDPVE 68
           +RFGEVVV+     LE+ GK+S  MLSP TTYAAY VFKM++R+Y+GFN+D V+
Sbjct: 137 SRFGEVVVIFKAWWLEIRGKLSSGMLSPRTTYAAYIVFKMRERRYFGFNIDFVD 190

Query: 69   128
           
Sbjct: 197  190

Query: 129  171
           
Sbjct: 257  190

[Close]

BLAST of CU145214 vs. TrEMBL
Match: A0A0A0LUI2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421930 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-09
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 3


Query: 6   RNRFGEVVVLLDICLLEVSGKISCRMLSPATTYAAYFVFKMKKRKYYGFNLDPVE 65
           R+RF EV VLL    LE+ G+ISC++LSP TTYA YFVFKMK   Y GFN  P +
Sbjct: 146 RSRFAEVAVLLKAWWLELRGRISCKILSPRTTYAVYFVFKMKNCNYEGFNFYPAD 200

Query: 66   125
           
Sbjct: 206  200

Query: 126  171
           
Sbjct: 266  200

[Close]

BLAST of CU145214 vs. TrEMBL
Match: A0A0A0LX65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421920 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.0e-09
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 3


Query: 9   NRFGEVVVLLDICLLEVSGKISCRMLSPATTYAAYFVFKMKKRKYYGFNLDP 68
           +RF EV VLL     E+ G++SCRMLSP T YAAYF+FK+ +R Y GFN+DP
Sbjct: 144 SRFAEVAVLLFEWWFEIRGRLSCRMLSPKTVYAAYFLFKLGERSYSGFNIDP 195

Query: 69   128
           
Sbjct: 204  195

Query: 129  165
           
Sbjct: 264  195

[Close]

BLAST of CU145214 vs. NCBI nr
Match: gi|700210335|gb|KGN65431.1| (hypothetical protein Csa_1G421910 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 3


Query: 3   LRNRFGEVVVLLDICLLEVSGKISCRMLSPATTYAAYFVFKMKKRKYYGFNLDPVE 62
           LRNRFGEVVVLLDICLLEVSGKISCRMLSPATTYAAYFVFKMKKRKYYGFNLDPVE
Sbjct: 153 LRNRFGEVVVLLDICLLEVSGKISCRMLSPATTYAAYFVFKMKKRKYYGFNLDPVE 208

Query: 63   122
           
Sbjct: 213  208

Query: 123  171
           
Sbjct: 273  208

[Close]

BLAST of CU145214 vs. NCBI nr
Match: gi|449457133|ref|XP_004146303.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-12
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 3


Query: 9   NRFGEVVVLLDICLLEVSGKISCRMLSPATTYAAYFVFKMKKRKYYGFNL 68
           +RF EV VLL++  LE+ GK+SC+MLSPATTYAAYFVFKM +R+YYGF++
Sbjct: 140 SRFAEVAVLLNVWWLEIKGKLSCKMLSPATTYAAYFVFKMDERRYYGFDI 189

Query: 69   128
           
Sbjct: 200  189

Query: 129  159
           
Sbjct: 260  189

[Close]

BLAST of CU145214 vs. NCBI nr
Match: gi|659107353|ref|XP_008453631.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-12
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 3


Query: 9   NRFGEVVVLLDICLLEVSGKISCRMLSPATTYAAYFVFKMKKRKYYGFNL 68
           +RF EV VLL++  LE+ GK+SC+MLSPATTYAAYFVFKM +R+YYGF++
Sbjct: 140 SRFAEVAVLLNVWWLEIKGKLSCKMLSPATTYAAYFVFKMDERRYYGFDI 189

Query: 69   128
           
Sbjct: 200  189

Query: 129  159
           
Sbjct: 260  189

[Close]

BLAST of CU145214 vs. NCBI nr
Match: gi|659107349|ref|XP_008453629.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 3.6e-11
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 3


Query: 9   NRFGEVVVLLDICLLEVSGKISCRMLSPATTYAAYFVFKMKKRKYYGFNLDPVE 68
           +RFGEVVV+     LE+ GKIS R+LSP TTYAAY VFKM++R+Y+GFN+D V+
Sbjct: 137 SRFGEVVVIFKAWWLEIRGKISSRLLSPTTTYAAYIVFKMRERRYFGFNIDFVD 190

Query: 69   128
           
Sbjct: 197  190

Query: 129  171
           
Sbjct: 257  190

[Close]

BLAST of CU145214 vs. NCBI nr
Match: gi|778660690|ref|XP_004146304.2| (PREDICTED: F-box protein PP2-B10-like [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-10
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 3


Query: 9   NRFGEVVVLLDICLLEVSGKISCRMLSPATTYAAYFVFKMKKRKYYGFNLDPVE 68
           +RFGEVVV+     LE+ GK+S  MLSP TTYAAY VFKM++R+Y+GFN+D V+
Sbjct: 137 SRFGEVVVIFKAWWLEIRGKLSSGMLSPRTTYAAYIVFKMRERRYFGFNIDFVD 190

Query: 69   128
           
Sbjct: 197  190

Query: 129  171
           
Sbjct: 257  190

The following BLAST results are available for this feature:

BLAST of CU145214 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP2B1_ARATH	1.4e-07	50.00	F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1	[more]
FB95_ARATH	1.2e-06	53.49	F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1	[more]
P2B12_ARATH	2.0e-06	48.15	Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=3 SV=1	[more]

BLAST of CU145214 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZQ3_CUCSA	1.3e-23	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421910 PE=4 SV=1	[more]
A0A0A0LWS1_CUCSA	3.8e-12	68.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421890 PE=4 SV=1	[more]
A0A0A0LU29_CUCSA	2.8e-10	61.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421900 PE=4 SV=1	[more]
A0A0A0LUI2_CUCSA	1.8e-09	60.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421930 PE=4 SV=1	[more]
A0A0A0LX65_CUCSA	3.0e-09	59.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421920 PE=4 SV=1	[more]

BLAST of CU145214 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210335\|gb\|KGN65431.1\|	1.1e-23	100.00	hypothetical protein Csa_1G421910 [Cucumis sativus]	[more]
gi\|449457133\|ref\|XP_004146303.1\|	5.5e-12	68.00	PREDICTED: F-box protein PP2-B10-like [Cucumis sativus]	[more]
gi\|659107353\|ref\|XP_008453631.1\|	5.5e-12	68.00	PREDICTED: F-box protein PP2-B10-like [Cucumis melo]	[more]
gi\|659107349\|ref\|XP_008453629.1\|	3.6e-11	62.96	PREDICTED: F-box protein PP2-B10-like [Cucumis melo]	[more]
gi\|778660690\|ref\|XP_004146304.2\|	2.3e-10	61.11	PREDICTED: F-box protein PP2-B10-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR025886	PP2-like

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G421910	Csa1G421910	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0126513	G0126513	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025886	Phloem protein 2-like	PFAM	PF14299	PP2	coord: 4..57 score: 4.7
None	No IPR available	PANTHER	PTHR32278	FAMILY NOT NAMED	coord: 4..57 score: 2.2