CU145170 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU145170
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 6637287 .. 6641941 (+)
Sequence length	202

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CAGAAGCAGGACTGTCGACATGGGGAAGATGGCCACTATCTGTAATTACTCGCAGTACTGCATTTGGTAACTCACAATGAAGCCTCACCGCATCTTTAAAGCGAATAATTCTGTCATCTTCGCCAGCAATAACAAGTGCTCTGTGCTTGACCTGTTTAATCTGGGAAATGGCATTATAACCTCCACTTTTCATAAAACTAAC

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU145170 vs. TrEMBL
Match: A0A0A0L0M5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G102300 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.9e-29
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = -1


Query: 2   VSFMKSGGYNAISQIKQVKHRALVIAGEDDRIIRFKDAVRLHCELPNAVLRVITDSGHLP 61
           VSFMKSGGYN ISQIKQVKHRALVIAGEDDRIIRFKDAVRLHCELPNAVLRVITDSGHLP
Sbjct: 51  VSFMKSGGYNVISQIKQVKHRALVIAGEDDRIIRFKDAVRLHCELPNAVLRVITDSGHLP 110

Query: 62  HVDSPAS 121
           HVDSPAS
Sbjct: 111 HVDSPAS 117

Query: 122  181
           
Sbjct: 171  117

Query: 182  203
           
Sbjct: 231  117

[Close]

BLAST of CU145170 vs. TrEMBL
Match: W9R4Q7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021020 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-17
Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = -1


Query: 2   VSFMKSGGYNAISQIKQVKHRALVIAGEDDRIIRFKDAVRLHCELPNAVLRVITDSGHLP 61
           VSFM+SGGYN   QIKQVKH+AL+I GE+D+II +K  +RLHCEL ++ +R+I +SGHLP
Sbjct: 247 VSFMRSGGYNVAGQIKQVKHKALIICGENDQIISYKQTMRLHCELSDSKMRLIPESGHLP 306

Query: 62  HVDSPAS 121
           HV+ P S
Sbjct: 307 HVEKPVS 313

Query: 122  181
           
Sbjct: 367  313

Query: 182  203
           
Sbjct: 427  313

[Close]

BLAST of CU145170 vs. TrEMBL
Match: B9H0K3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s11910g PE=4 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 3.4e-17
Identity = 43/65 (66.15%), Postives = 53/65 (81.54%), Query Frame = -1


Query: 8   VSFMKSGGYNAISQIKQVKHRALVIAGEDDRIIRFKDAVRLHCELPNAVLRVITDSGHLP 67
           VSFM SGGYN ISQIKQVKH+ L+I GE D+I+ +K  V+LH EL NA++R + DSGHLP
Sbjct: 263 VSFMLSGGYNVISQIKQVKHKTLIICGEKDQIVSYKLVVKLHSELSNAIIREVYDSGHLP 322

Query: 68  HVDSP 127
           HVD+P
Sbjct: 323 HVDNP 327

Query: 128  187
           
Sbjct: 383  327

Query: 188  203
           
Sbjct: 443  327

[Close]

BLAST of CU145170 vs. TrEMBL
Match: M5WYQ8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007817mg PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.4e-17
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = -1


Query: 2   VSFMKSGGYNAISQIKQVKHRALVIAGEDDRIIRFKDAVRLHCELPNAVLRVITDSGHLP 61
           VSFM SGGYN ISQIKQVK + LVI  E D II +K  +RL CELP A++R+I DSGHLP
Sbjct: 274 VSFMSSGGYNVISQIKQVKQKVLVICSEQDHIISYKQILRLRCELPCAIMRLIPDSGHLP 333

Query: 62  HVDSPAS 121
           HV++P S
Sbjct: 334 HVENPTS 340

Query: 122  181
           
Sbjct: 394  340

Query: 182  203
           
Sbjct: 454  340

[Close]

BLAST of CU145170 vs. TrEMBL
Match: B9IK72_POPTR (Hydrolase family protein OS=Populus trichocarpa GN=POPTR_0017s12890g PE=4 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 4.4e-17
Identity = 41/65 (63.08%), Postives = 54/65 (83.08%), Query Frame = -1


Query: 8   VSFMKSGGYNAISQIKQVKHRALVIAGEDDRIIRFKDAVRLHCELPNAVLRVITDSGHLP 67
           VSFM SGGYN ISQIKQVKH+ L+I G+ D+I+ ++  V+LH EL NA++R ++DSGHLP
Sbjct: 189 VSFMLSGGYNVISQIKQVKHKTLIICGQHDQIVSYQHVVKLHSELSNAIIREVSDSGHLP 248

Query: 68  HVDSP 127
           HVD+P
Sbjct: 249 HVDNP 253

Query: 128  187
           
Sbjct: 309  253

Query: 188  203
           
Sbjct: 369  253

[Close]

BLAST of CU145170 vs. NCBI nr
Match: gi|778691877|ref|XP_011653371.1| (PREDICTED: uncharacterized protein LOC101203865 isoform X2 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 3.2e-29
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = -1


Query: 2   VSFMKSGGYNAISQIKQVKHRALVIAGEDDRIIRFKDAVRLHCELPNAVLRVITDSGHLP 61
           VSFMKSGGYN ISQIKQVKHRALVIAGEDDRIIRFKDAVRLHCELPNAVLRVITDSGHLP
Sbjct: 196 VSFMKSGGYNVISQIKQVKHRALVIAGEDDRIIRFKDAVRLHCELPNAVLRVITDSGHLP 255

Query: 62  HVDSPAS 121
           HVDSPAS
Sbjct: 256 HVDSPAS 262

Query: 122  181
           
Sbjct: 316  262

Query: 182  203
           
Sbjct: 376  262

[Close]

BLAST of CU145170 vs. NCBI nr
Match: gi|700198523|gb|KGN53681.1| (hypothetical protein Csa_4G102300 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 3.2e-29
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = -1


Query: 2   VSFMKSGGYNAISQIKQVKHRALVIAGEDDRIIRFKDAVRLHCELPNAVLRVITDSGHLP 61
           VSFMKSGGYN ISQIKQVKHRALVIAGEDDRIIRFKDAVRLHCELPNAVLRVITDSGHLP
Sbjct: 51  VSFMKSGGYNVISQIKQVKHRALVIAGEDDRIIRFKDAVRLHCELPNAVLRVITDSGHLP 110

Query: 62  HVDSPAS 121
           HVDSPAS
Sbjct: 111 HVDSPAS 117

Query: 122  181
           
Sbjct: 171  117

Query: 182  203
           
Sbjct: 231  117

[Close]

BLAST of CU145170 vs. NCBI nr
Match: gi|778691874|ref|XP_011653370.1| (PREDICTED: uncharacterized protein LOC101203865 isoform X1 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 3.2e-29
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = -1


Query: 2   VSFMKSGGYNAISQIKQVKHRALVIAGEDDRIIRFKDAVRLHCELPNAVLRVITDSGHLP 61
           VSFMKSGGYN ISQIKQVKHRALVIAGEDDRIIRFKDAVRLHCELPNAVLRVITDSGHLP
Sbjct: 258 VSFMKSGGYNVISQIKQVKHRALVIAGEDDRIIRFKDAVRLHCELPNAVLRVITDSGHLP 317

Query: 62  HVDSPAS 121
           HVDSPAS
Sbjct: 318 HVDSPAS 324

Query: 122  181
           
Sbjct: 378  324

Query: 182  203
           
Sbjct: 438  324

[Close]

BLAST of CU145170 vs. NCBI nr
Match: gi|659120567|ref|XP_008460251.1| (PREDICTED: uncharacterized protein LOC103499127 isoform X1 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 6.1e-28
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = -1


Query: 2   VSFMKSGGYNAISQIKQVKHRALVIAGEDDRIIRFKDAVRLHCELPNAVLRVITDSGHLP 61
           VSFM SGGYN ISQIKQVKHRALVIAGEDDRIIRFKD VRLHCELPNAV+RVITDSGHLP
Sbjct: 258 VSFMNSGGYNVISQIKQVKHRALVIAGEDDRIIRFKDVVRLHCELPNAVMRVITDSGHLP 317

Query: 62  HVDSPAS 121
           HVDSPAS
Sbjct: 318 HVDSPAS 324

Query: 122  181
           
Sbjct: 378  324

Query: 182  203
           
Sbjct: 438  324

[Close]

BLAST of CU145170 vs. NCBI nr
Match: gi|659120569|ref|XP_008460252.1| (PREDICTED: uncharacterized protein LOC103499127 isoform X2 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 6.1e-28
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = -1


Query: 2   VSFMKSGGYNAISQIKQVKHRALVIAGEDDRIIRFKDAVRLHCELPNAVLRVITDSGHLP 61
           VSFM SGGYN ISQIKQVKHRALVIAGEDDRIIRFKD VRLHCELPNAV+RVITDSGHLP
Sbjct: 196 VSFMNSGGYNVISQIKQVKHRALVIAGEDDRIIRFKDVVRLHCELPNAVMRVITDSGHLP 255

Query: 62  HVDSPAS 121
           HVDSPAS
Sbjct: 256 HVDSPAS 262

Query: 122  181
           
Sbjct: 316  262

Query: 182  203
           
Sbjct: 376  262

The following BLAST results are available for this feature:

BLAST of CU145170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0M5_CUCSA	3.9e-29	98.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G102300 PE=4 SV=1	[more]
W9R4Q7_9ROSA	1.5e-17	62.69	Uncharacterized protein OS=Morus notabilis GN=L484_021020 PE=4 SV=1	[more]
B9H0K3_POPTR	3.4e-17	66.15	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s11910g PE=4 SV=2	[more]
M5WYQ8_PRUPE	4.4e-17	65.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007817mg PE=4 SV=1	[more]
B9IK72_POPTR	4.4e-17	63.08	Hydrolase family protein OS=Populus trichocarpa GN=POPTR_0017s12890g PE=4 SV=2	[more]

BLAST of CU145170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778691877\|ref\|XP_011653371.1\|	3.2e-29	98.51	PREDICTED: uncharacterized protein LOC101203865 isoform X2 [Cucumis sativus]	[more]
gi\|700198523\|gb\|KGN53681.1\|	3.2e-29	98.51	hypothetical protein Csa_4G102300 [Cucumis sativus]	[more]
gi\|778691874\|ref\|XP_011653370.1\|	3.2e-29	98.51	PREDICTED: uncharacterized protein LOC101203865 isoform X1 [Cucumis sativus]	[more]
gi\|659120567\|ref\|XP_008460251.1\|	6.1e-28	94.03	PREDICTED: uncharacterized protein LOC103499127 isoform X1 [Cucumis melo]	[more]
gi\|659120569\|ref\|XP_008460252.1\|	6.1e-28	94.03	PREDICTED: uncharacterized protein LOC103499127 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G102300	Csa4G102300	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0126110	G0126110	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10992	ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN	coord: 1..67 score: 1.7
None	No IPR available	PANTHER	PTHR10992:SF825	HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN	coord: 1..67 score: 1.7