CU145108 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU145108
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 18969126 .. 18969424 (-)
Sequence length213
The following sequences are available for this feature:

transcribed_cluster sequence

AAGCACTGATCCCTGACTTTTCTCTGAATCCATAACAGATTTAAGTTCTGCAACCTTCTGTCTAGCAGCATGTTCTACAGGAATAAGTGAGCCTTGTTCCTTAATACACTCTTGCTCTTCTTCTTGAGCTTTCAAGGTTTCCAATTTTCTCTTTTGAAGCTCAGTTTTAATCTGTTCAAGTCTTTGTAGACTTTTCTTCTATTGTTTTTCAGT
Library categoryESTs
gynoecious flower library1
BLAST of CU145108 vs. Swiss-Prot
Match: SMC4_ARATH (Structural maintenance of chromosomes protein 4 OS=Arabidopsis thaliana GN=SMC4 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-10
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = -1

Query: 1   KTELQKRKLETLKAQEEEQECIKEQGSLIPVEHAARQKVAELKSVMDSEKSQGSVL 60
           K +++K+K E ++A++ E+E +KEQ +L+P E AAR+KVAELKS M+SEKSQ  VL
Sbjct: 487 KADIKKKKQEAIEARKVEEESLKEQETLVPQEQAAREKVAELKSAMNSEKSQNEVL 542

Query: 61  120
           
Sbjct: 547 542

Query: 121 169
           
Sbjct: 607 542

BLAST of CU145108 vs. TrEMBL
Match: A0A0A0KUL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G532970 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-23
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = -1

Query: 1   RLEQIKTELQKRKLETLKAQEEEQECIKEQGSLIPVEHAARQKVAELKSVMDSEKSQGSV 60
           +LEQIKTELQKRKLETLKAQEEEQECIKEQGSLIPVEHAARQKVAELKSVMDSEKSQGSV
Sbjct: 254 KLEQIKTELQKRKLETLKAQEEEQECIKEQGSLIPVEHAARQKVAELKSVMDSEKSQGSV 313

Query: 61  L 120
           L
Sbjct: 314 L 314

Query: 121 180
           
Sbjct: 374 314

Query: 181 184
           
Sbjct: 434 314

BLAST of CU145108 vs. TrEMBL
Match: V7C2X7_PHAVU (Structural maintenance of chromosomes protein OS=Phaseolus vulgaris GN=PHAVU_004G029000g PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.4e-13
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = -1

Query: 1   KKSLQRLEQIKTELQKRKLETLKAQEEEQECIKEQGSLIPVEHAARQKVAELKSVMDSEK 60
           K     L QIK +++K K E L+A + E+ECIKEQ  LIP+E +ARQKVAELKSV+DSEK
Sbjct: 475 KSKTASLSQIKRDIEKSKHEALEAHKIEEECIKEQDELIPLEQSARQKVAELKSVLDSEK 534

Query: 61  SQGSVL 120
           SQGSVL
Sbjct: 535 SQGSVL 540

Query: 121 180
           
Sbjct: 595 540

Query: 181 199
           
Sbjct: 655 540

BLAST of CU145108 vs. TrEMBL
Match: V4SUG6_9ROSI (Structural maintenance of chromosomes protein OS=Citrus clementina GN=CICLE_v10010934mg PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.1e-13
Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = -1

Query: 1   LEQIKTELQKRKLETLKAQEEEQECIKEQGSLIPVEHAARQKVAELKSVMDSEKSQGSVL 60
           +  ++ +L+K KLE ++A+  EQEC KEQ +LIP+E AARQKVAELKSVMDSEKSQGSVL
Sbjct: 479 IRNMQGDLEKNKLEAMEARNAEQECFKEQETLIPLEQAARQKVAELKSVMDSEKSQGSVL 538

Query: 61  120
           
Sbjct: 539 538

Query: 121 180
           
Sbjct: 599 538

BLAST of CU145108 vs. TrEMBL
Match: A0A061EEP1_THECC (Structural maintenance of chromosomes protein OS=Theobroma cacao GN=TCM_018557 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.1e-13
Identity = 41/60 (68.33%), Postives = 52/60 (86.67%), Query Frame = -1

Query: 1   LEQIKTELQKRKLETLKAQEEEQECIKEQGSLIPVEHAARQKVAELKSVMDSEKSQGSVL 60
           +E  ++ L+K KLE L+A++ EQECIKEQ +LIP+E AAR+KVAELKSV+DSEKSQGSVL
Sbjct: 485 IEGKRSNLEKNKLEALEARKLEQECIKEQEALIPLEQAAREKVAELKSVLDSEKSQGSVL 544

Query: 61  120
           
Sbjct: 545 544

Query: 121 180
           
Sbjct: 605 544

BLAST of CU145108 vs. TrEMBL
Match: A0A061EMB4_THECC (Structural maintenance of chromosomes protein OS=Theobroma cacao GN=TCM_018557 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.1e-13
Identity = 41/60 (68.33%), Postives = 52/60 (86.67%), Query Frame = -1

Query: 1   LEQIKTELQKRKLETLKAQEEEQECIKEQGSLIPVEHAARQKVAELKSVMDSEKSQGSVL 60
           +E  ++ L+K KLE L+A++ EQECIKEQ +LIP+E AAR+KVAELKSV+DSEKSQGSVL
Sbjct: 485 IEGKRSNLEKNKLEALEARKLEQECIKEQEALIPLEQAAREKVAELKSVLDSEKSQGSVL 544

Query: 61  120
           
Sbjct: 545 544

Query: 121 180
           
Sbjct: 605 544

BLAST of CU145108 vs. NCBI nr
Match: gi|778703815|ref|XP_011655432.1| (PREDICTED: structural maintenance of chromosomes protein 4 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 7.7e-21
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = -1

Query: 1   RLEQIKTELQKRKLETLKAQEEEQECIKEQGSLIPVEHAARQKVAELKSVMDSEKSQGSV 60
           +LEQIKTELQKRKLETLKAQEEEQECIKEQGSLIPVEHAARQKVAELKSVMDSEKSQGSV
Sbjct: 485 KLEQIKTELQKRKLETLKAQEEEQECIKEQGSLIPVEHAARQKVAELKSVMDSEKSQGSV 544

Query: 61  L 120
           L
Sbjct: 545 L 545

Query: 121 180
           
Sbjct: 605 545

Query: 181 184
           
Sbjct: 665 545

BLAST of CU145108 vs. NCBI nr
Match: gi|700196239|gb|KGN51416.1| (hypothetical protein Csa_5G532970 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 7.7e-21
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = -1

Query: 1   RLEQIKTELQKRKLETLKAQEEEQECIKEQGSLIPVEHAARQKVAELKSVMDSEKSQGSV 60
           +LEQIKTELQKRKLETLKAQEEEQECIKEQGSLIPVEHAARQKVAELKSVMDSEKSQGSV
Sbjct: 254 KLEQIKTELQKRKLETLKAQEEEQECIKEQGSLIPVEHAARQKVAELKSVMDSEKSQGSV 313

Query: 61  L 120
           L
Sbjct: 314 L 314

Query: 121 180
           
Sbjct: 374 314

Query: 181 184
           
Sbjct: 434 314

BLAST of CU145108 vs. NCBI nr
Match: gi|659121263|ref|XP_008460572.1| (PREDICTED: LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 4 [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-18
Identity = 54/60 (90.00%), Postives = 59/60 (98.33%), Query Frame = -1

Query: 1   LEQIKTELQKRKLETLKAQEEEQECIKEQGSLIPVEHAARQKVAELKSVMDSEKSQGSVL 60
           +EQ+KTELQKRKLE+LKAQEEEQEC+KEQ SLIPVEHAARQKVAELKSVMDSEKSQGSV+
Sbjct: 486 IEQVKTELQKRKLESLKAQEEEQECMKEQESLIPVEHAARQKVAELKSVMDSEKSQGSVI 545

Query: 61  120
           
Sbjct: 546 545

Query: 121 180
           
Sbjct: 606 545

BLAST of CU145108 vs. NCBI nr
Match: gi|502153800|ref|XP_004509467.1| (PREDICTED: structural maintenance of chromosomes protein 4 [Cicer arietinum])

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-11
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = -1

Query: 1   KKSLQRLEQIKTELQKRKLETLKAQEEEQECIKEQGSLIPVEHAARQKVAELKSVMDSEK 60
           K  +  + QIK++++K KLE L+A   E+ECIKEQ +LIP+E  ARQKVAELKSV+DSEK
Sbjct: 470 KSKIASISQIKSDIEKSKLEALEAHRVEEECIKEQDALIPLEQGARQKVAELKSVLDSEK 529

Query: 61  SQGSVL 120
           SQGSVL
Sbjct: 530 SQGSVL 535

Query: 121 180
           
Sbjct: 590 535

Query: 181 199
           
Sbjct: 650 535

BLAST of CU145108 vs. NCBI nr
Match: gi|1021582615|ref|XP_016180702.1| (PREDICTED: structural maintenance of chromosomes protein 4 [Arachis ipaensis])

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-10
Identity = 40/60 (66.67%), Postives = 51/60 (85.00%), Query Frame = -1

Query: 1   LEQIKTELQKRKLETLKAQEEEQECIKEQGSLIPVEHAARQKVAELKSVMDSEKSQGSVL 60
           + QI  +++KRK + ++A + E+ECIKEQ +LIP+E AARQKVAELKSVMDSEKSQGSVL
Sbjct: 477 ISQIMGDIEKRKRDAVEAHQVEEECIKEQDALIPLEQAARQKVAELKSVMDSEKSQGSVL 536

Query: 61  120
           
Sbjct: 537 536

Query: 121 180
           
Sbjct: 597 536

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SMC4_ARATH2.1e-1055.36Structural maintenance of chromosomes protein 4 OS=Arabidopsis thaliana GN=SMC4 ... [more]
Match NameE-valueIdentityDescription
A0A0A0KUL0_CUCSA1.2e-2398.36Uncharacterized protein OS=Cucumis sativus GN=Csa_5G532970 PE=4 SV=1[more]
V7C2X7_PHAVU2.4e-1363.64Structural maintenance of chromosomes protein OS=Phaseolus vulgaris GN=PHAVU_004... [more]
V4SUG6_9ROSI4.1e-1366.67Structural maintenance of chromosomes protein OS=Citrus clementina GN=CICLE_v100... [more]
A0A061EEP1_THECC4.1e-1368.33Structural maintenance of chromosomes protein OS=Theobroma cacao GN=TCM_018557 P... [more]
A0A061EMB4_THECC4.1e-1368.33Structural maintenance of chromosomes protein OS=Theobroma cacao GN=TCM_018557 P... [more]
Match NameE-valueIdentityDescription
gi|778703815|ref|XP_011655432.1|7.7e-2198.36PREDICTED: structural maintenance of chromosomes protein 4 [Cucumis sativus][more]
gi|700196239|gb|KGN51416.1|7.7e-2198.36hypothetical protein Csa_5G532970 [Cucumis sativus][more]
gi|659121263|ref|XP_008460572.1|2.1e-1890.00PREDICTED: LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 4 ... [more]
gi|502153800|ref|XP_004509467.1|3.2e-1163.64PREDICTED: structural maintenance of chromosomes protein 4 [Cicer arietinum][more]
gi|1021582615|ref|XP_016180702.1|1.6e-1066.67PREDICTED: structural maintenance of chromosomes protein 4 [Arachis ipaensis][more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa5G532970Csa5G532970gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0125608G0125608EST


Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 13..33
scor