CU144474 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU144474
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Peroxidase
Location	Chr1 : 7841957 .. 7842069 (-)
Sequence length	121

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGGAAGGTACAGATATAGTGGCGCCATTCGATGTAACGACGCCGTTTGTGTTTGATCATGCGTACTACGGAAATTTGGAAGGGAAATTGGGATTGTTGGCTACGGATCAAGGTCTGGTTCG

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU144474 vs. TrEMBL
Match: A0A0A0LXH6_CUCSA (Peroxidase OS=Cucumis sativus GN=Csa_1G077120 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.6e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 3


Query: 9   TDIVAPFDVTTPFVFDHAYYGNLEGKLGLLATDQGLV 68
           TDIVAPFDVTTPFVFDHAYYGNLEGKLGLLATDQGLV
Sbjct: 270 TDIVAPFDVTTPFVFDHAYYGNLEGKLGLLATDQGLV 306

Query: 69   120
           
Sbjct: 330  306

[Close]

BLAST of CU144474 vs. TrEMBL
Match: A0A061GEV3_THECC (Peroxidase OS=Theobroma cacao GN=TCM_029767 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.1e-10
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 3


Query: 12  DIVAPFDVTTPFVFDHAYYGNLEGKLGLLATDQGL 71
           DIVAPFDVTTPF+FDHAYY NLEGKLGLLA+DQGL
Sbjct: 260 DIVAPFDVTTPFLFDHAYYANLEGKLGLLASDQGL 294

Query: 72   117
           
Sbjct: 320  294

[Close]

BLAST of CU144474 vs. TrEMBL
Match: A0A061GFA2_THECC (Peroxidase (Fragment) OS=Theobroma cacao GN=TCM_029767 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.1e-10
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 3


Query: 12  DIVAPFDVTTPFVFDHAYYGNLEGKLGLLATDQGL 71
           DIVAPFDVTTPF+FDHAYY NLEGKLGLLA+DQGL
Sbjct: 322 DIVAPFDVTTPFLFDHAYYANLEGKLGLLASDQGL 356

Query: 72   117
           
Sbjct: 382  356

[Close]

BLAST of CU144474 vs. TrEMBL
Match: B9S954_RICCO (Peroxidase OS=Ricinus communis GN=RCOM_1012870 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.2e-10
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 3


Query: 12  DIVAPFDVTTPFVFDHAYYGNLEGKLGLLATDQGL 71
           DIVAPFDVTTPF+FDHAYYGNLE KLGLLATDQ L
Sbjct: 277 DIVAPFDVTTPFLFDHAYYGNLESKLGLLATDQAL 311

Query: 72   117
           
Sbjct: 337  311

[Close]

BLAST of CU144474 vs. TrEMBL
Match: M5X173_PRUPE (Peroxidase OS=Prunus persica GN=PRUPE_ppa017084mg PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.8e-10
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 3


Query: 12  DIVAPFDVTTPFVFDHAYYGNLEGKLGLLATDQGL 71
           DIVAPFDVTTPFVFDHAYYGNLE KLGLLA+DQ L
Sbjct: 265 DIVAPFDVTTPFVFDHAYYGNLEAKLGLLASDQAL 299

Query: 72   117
           
Sbjct: 325  299

[Close]

BLAST of CU144474 vs. NCBI nr
Match: gi|449462103|ref|XP_004148781.1| (PREDICTED: peroxidase 19 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 4.2e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 3


Query: 9   TDIVAPFDVTTPFVFDHAYYGNLEGKLGLLATDQGLV 68
           TDIVAPFDVTTPFVFDHAYYGNLEGKLGLLATDQGLV
Sbjct: 258 TDIVAPFDVTTPFVFDHAYYGNLEGKLGLLATDQGLV 294

Query: 69   120
           
Sbjct: 318  294

[Close]

BLAST of CU144474 vs. NCBI nr
Match: gi|700209615|gb|KGN64711.1| (hypothetical protein Csa_1G077120 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 4.2e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 3


Query: 9   TDIVAPFDVTTPFVFDHAYYGNLEGKLGLLATDQGLV 68
           TDIVAPFDVTTPFVFDHAYYGNLEGKLGLLATDQGLV
Sbjct: 270 TDIVAPFDVTTPFVFDHAYYGNLEGKLGLLATDQGLV 306

Query: 69   120
           
Sbjct: 330  306

[Close]

BLAST of CU144474 vs. NCBI nr
Match: gi|659068140|ref|XP_008442954.1| (PREDICTED: peroxidase 19 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 9.4e-13
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 3


Query: 9   TDIVAPFDVTTPFVFDHAYYGNLEGKLGLLATDQGLV 68
           TDIVAPFDVTTPF+FDHAYYGNLEGKLGLLATDQGLV
Sbjct: 258 TDIVAPFDVTTPFLFDHAYYGNLEGKLGLLATDQGLV 294

Query: 69   120
           
Sbjct: 318  294

[Close]

BLAST of CU144474 vs. NCBI nr
Match: gi|470112431|ref|XP_004292438.1| (PREDICTED: peroxidase 19 [Fragaria vesca subsp. vesca])

HSP 1 Score: 73.6 bits (179), Expect = 8.8e-11
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 3


Query: 9   TDIVAPFDVTTPFVFDHAYYGNLEGKLGLLATDQGL 68
           TDIVAPFDVTTPFVFDHAYYGNLE KLGLLA+DQ L
Sbjct: 255 TDIVAPFDVTTPFVFDHAYYGNLEAKLGLLASDQAL 290

Query: 69   117
           
Sbjct: 315  290

[Close]

BLAST of CU144474 vs. NCBI nr
Match: gi|590623997|ref|XP_007025480.1| (Peroxidase 19, putative isoform 2, partial [Theobroma cacao])

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-10
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 3


Query: 12  DIVAPFDVTTPFVFDHAYYGNLEGKLGLLATDQGL 71
           DIVAPFDVTTPF+FDHAYY NLEGKLGLLA+DQGL
Sbjct: 322 DIVAPFDVTTPFLFDHAYYANLEGKLGLLASDQGL 356

Query: 72   117
           
Sbjct: 382  356

The following BLAST results are available for this feature:

BLAST of CU144474 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXH6_CUCSA	8.6e-13	100.00	Peroxidase OS=Cucumis sativus GN=Csa_1G077120 PE=3 SV=1	[more]
A0A061GEV3_THECC	3.1e-10	91.43	Peroxidase OS=Theobroma cacao GN=TCM_029767 PE=3 SV=1	[more]
A0A061GFA2_THECC	3.1e-10	91.43	Peroxidase (Fragment) OS=Theobroma cacao GN=TCM_029767 PE=3 SV=1	[more]
B9S954_RICCO	5.2e-10	91.43	Peroxidase OS=Ricinus communis GN=RCOM_1012870 PE=3 SV=1	[more]
M5X173_PRUPE	6.8e-10	91.43	Peroxidase OS=Prunus persica GN=PRUPE_ppa017084mg PE=3 SV=1	[more]

BLAST of CU144474 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462103\|ref\|XP_004148781.1\|	4.2e-13	100.00	PREDICTED: peroxidase 19 [Cucumis sativus]	[more]
gi\|700209615\|gb\|KGN64711.1\|	4.2e-13	100.00	hypothetical protein Csa_1G077120 [Cucumis sativus]	[more]
gi\|659068140\|ref\|XP_008442954.1\|	9.4e-13	97.30	PREDICTED: peroxidase 19 [Cucumis melo]	[more]
gi\|470112431\|ref\|XP_004292438.1\|	8.8e-11	91.67	PREDICTED: peroxidase 19 [Fragaria vesca subsp. vesca]	[more]
gi\|590623997\|ref\|XP_007025480.1\|	1.5e-10	91.43	Peroxidase 19, putative isoform 2, partial [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR000823	Peroxidase_pln
IPR010255	Haem_peroxidase

Vocabulary: **Molecular Function**
Term	Definition
GO:0004601	peroxidase activity
GO:0020037	heme binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006979	response to oxidative stress
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006979	response to oxidative stress
molecular_function	GO:0020037	heme binding
molecular_function	GO:0004601	peroxidase activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G077120	Csa1G077120	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0118753	G0118753	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000823	Plant peroxidase	PRINTS	PR00461	PLPEROXIDASE	coord: 9..24 score: 8.5E-6coord: 25..41 score: 8.
IPR010255	Haem peroxidase	unknown	SSF48113	Heme-dependent peroxidases	coord: 3..40 score: 3.7
None	No IPR available	GENE3D	G3DSA:1.10.420.10		coord: 5..40 score: 8.
None	No IPR available	PANTHER	PTHR31235	FAMILY NOT NAMED	coord: 5..39 score: 7.2
None	No IPR available	PANTHER	PTHR31235:SF56	PEROXIDASE 19	coord: 5..39 score: 7.2