CU144424 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU144424
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 11026748 .. 11027071 (-)
Sequence length224
The following sequences are available for this feature:

transcribed_cluster sequence

AACCAATGCCTGCTTCTCATCCTCTTGTACTTCTTCATTTCCGGTTCTGACGACACTATAAATTGCCGGCAGTATCGAACTATGACTAGAACAATGAAAGCTGTGAAAATTCGGGTCTTCAGGGAAGAAAAGTTCCAAAACGCTGTGGCTGCTGATCCTATCACAACCTTCTTATGTGAGCAAGCTTCCCATGCTTCAAACATCCATTGTTTTACGGCATCCAC
Library categoryESTs
gynoecious flower library1
BLAST of CU144424 vs. Swiss-Prot
Match: RTNLQ_ARATH (Reticulon-like protein B17 OS=Arabidopsis thaliana GN=RTNLB17 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-12
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = -1

Query: 33  VDAVKQWMFEAWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSE 92
           V+ VK  + EAW  CSHKK++ GSA TAFWN +S++TRIF  FI+LVI RY RQ +  + 
Sbjct: 321 VERVKTRIGEAWGVCSHKKILAGSAVTAFWNLTSIRTRIFAVFIILVIFRYRRQNLQLTP 380

Query: 93  PEMK 152
            E++
Sbjct: 381 EEVE 384

Query: 153 212
           
Sbjct: 441 384

Query: 213 225
           
Sbjct: 501 384

BLAST of CU144424 vs. Swiss-Prot
Match: RTNLR_ARATH (Reticulon-like protein B18 OS=Arabidopsis thaliana GN=RTNLB18 PE=2 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 6.8e-12
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = -1

Query: 6   VDAVKQWMFEAWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSE 65
           V+  ++   EAW  C+HKK V GSA TAFWN +SLKTR    FI++V++RY RQ +    
Sbjct: 349 VECAQRRFVEAWGVCTHKKFVAGSAVTAFWNLTSLKTRFIAVFIIVVVIRYRRQNLQLDS 408

Query: 66  PEMKKYKRMRSRH 125
            + ++ K+    H
Sbjct: 409 EDEEEKKQQEKTH 421

Query: 126 185
           
Sbjct: 469 421

Query: 186 225
           
Sbjct: 529 421

BLAST of CU144424 vs. TrEMBL
Match: A0A0A0KBW7_CUCSA (Reticulon-like protein OS=Cucumis sativus GN=Csa_6G157090 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 8.0e-28
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = -1

Query: 30  VDAVKQWMFEAWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSE 89
           VDAVKQWMFEAWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSE
Sbjct: 331 VDAVKQWMFEAWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSE 390

Query: 90  PEMKK 149
           PE+++
Sbjct: 391 PEIEE 395

Query: 150 209
           
Sbjct: 451 395

Query: 210 225
           
Sbjct: 511 395

BLAST of CU144424 vs. TrEMBL
Match: A0A0D2NFU5_GOSRA (Reticulon-like protein OS=Gossypium raimondii GN=B456_005G199800 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-15
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = -1

Query: 33  VKQWMFEAWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEM 92
           +K+W  E W ACSHKK+V  SAATAFWN SS+KTRIFTAFI +VI+RYCRQ +V    E+
Sbjct: 357 MKEWGMETWGACSHKKLVAASAATAFWNLSSIKTRIFTAFITMVIIRYCRQHLVQESVEV 416

Query: 93  K 152
           +
Sbjct: 417 E 417

Query: 153 212
           
Sbjct: 477 417

Query: 213 216
           
Sbjct: 537 417

BLAST of CU144424 vs. TrEMBL
Match: A0A0D2RIJ1_GOSRA (Reticulon-like protein OS=Gossypium raimondii GN=B456_005G199800 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-15
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = -1

Query: 33  VKQWMFEAWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEM 92
           +K+W  E W ACSHKK+V  SAATAFWN SS+KTRIFTAFI +VI+RYCRQ +V    E+
Sbjct: 356 MKEWGMETWGACSHKKLVAASAATAFWNLSSIKTRIFTAFITMVIIRYCRQHLVQESVEV 415

Query: 93  K 152
           +
Sbjct: 416 E 416

Query: 153 212
           
Sbjct: 476 416

Query: 213 216
           
Sbjct: 536 416

BLAST of CU144424 vs. TrEMBL
Match: A0A0D2PW79_GOSRA (Reticulon-like protein OS=Gossypium raimondii GN=B456_005G199800 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-15
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = -1

Query: 33  VKQWMFEAWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSEPEM 92
           +K+W  E W ACSHKK+V  SAATAFWN SS+KTRIFTAFI +VI+RYCRQ +V    E+
Sbjct: 348 MKEWGMETWGACSHKKLVAASAATAFWNLSSIKTRIFTAFITMVIIRYCRQHLVQESVEV 407

Query: 93  K 152
           +
Sbjct: 408 E 408

Query: 153 212
           
Sbjct: 468 408

Query: 213 216
           
Sbjct: 528 408

BLAST of CU144424 vs. TrEMBL
Match: M5VGG3_PRUPE (Reticulon-like protein OS=Prunus persica GN=PRUPE_ppa014722mg PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.7e-15
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = -1

Query: 54  VDAVKQWMFEAWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIV 113
           V+ +K W+ EAW ACSHKK+V  SAATAFWN SS++TRIFTAF+ LVI+RYCRQ +V
Sbjct: 336 VECLKWWVLEAWGACSHKKIVAASAATAFWNLSSVRTRIFTAFLSLVILRYCRQHMV 392

Query: 114 173
           
Sbjct: 396 392

Query: 174 225
           
Sbjct: 456 392

BLAST of CU144424 vs. NCBI nr
Match: gi|449463106|ref|XP_004149275.1| (PREDICTED: reticulon-like protein B17 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 4.4e-27
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = -1

Query: 30  VDAVKQWMFEAWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSE 89
           VDAVKQWMFEAWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSE
Sbjct: 331 VDAVKQWMFEAWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSE 390

Query: 90  PEMKK 149
           PE+++
Sbjct: 391 PEIEE 395

Query: 150 209
           
Sbjct: 451 395

Query: 210 225
           
Sbjct: 511 395

BLAST of CU144424 vs. NCBI nr
Match: gi|700191779|gb|KGN46983.1| (hypothetical protein Csa_6G157090 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 4.4e-27
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = -1

Query: 30  VDAVKQWMFEAWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSE 89
           VDAVKQWMFEAWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSE
Sbjct: 331 VDAVKQWMFEAWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSE 390

Query: 90  PEMKK 149
           PE+++
Sbjct: 391 PEIEE 395

Query: 150 209
           
Sbjct: 451 395

Query: 210 225
           
Sbjct: 511 395

BLAST of CU144424 vs. NCBI nr
Match: gi|659094813|ref|XP_008448255.1| (PREDICTED: reticulon-like protein B17 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 3.7e-26
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = -1

Query: 36  VDAVKQWMFEAWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSE 95
           VDAVKQW+FEAWEACSHKKVVIGSAAT FWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSE
Sbjct: 330 VDAVKQWLFEAWEACSHKKVVIGSAATVFWNFSSLKTRIFTAFIVLVIVRYCRQFIVSSE 389

Query: 96  PEM 155
           PE+
Sbjct: 390 PEI 392

Query: 156 215
           
Sbjct: 450 392

Query: 216 225
           
Sbjct: 510 392

BLAST of CU144424 vs. NCBI nr
Match: gi|645245712|ref|XP_008229008.1| (PREDICTED: reticulon-like protein B17 [Prunus mume])

HSP 1 Score: 89.0 bits (219), Expect = 3.9e-15
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = -1

Query: 54  VDAVKQWMFEAWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIV 113
           VD +K W+ EAW ACSHKK+V  SAATAFWN SS++TRIFTAFI LVI+RYCRQ +V
Sbjct: 342 VDCLKWWVMEAWGACSHKKIVAASAATAFWNLSSVRTRIFTAFISLVILRYCRQHMV 398

Query: 114 173
           
Sbjct: 402 398

Query: 174 225
           
Sbjct: 462 398

BLAST of CU144424 vs. NCBI nr
Match: gi|694333049|ref|XP_009357134.1| (PREDICTED: reticulon-like protein B17 [Pyrus x bretschneideri])

HSP 1 Score: 89.0 bits (219), Expect = 3.9e-15
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = -1

Query: 54  VDAVKQWMFEAWEACSHKKVVIGSAATAFWNFSSLKTRIFTAFIVLVIVRYCRQFIV 113
           VD +K W+ EAW ACSHK++V  SAATAFWN SS+KTRIFTAFI LVI+RYCRQ +V
Sbjct: 344 VDCLKWWVLEAWGACSHKRIVAASAATAFWNLSSVKTRIFTAFISLVILRYCRQHMV 400

Query: 114 173
           
Sbjct: 404 400

Query: 174 225
           
Sbjct: 464 400

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RTNLQ_ARATH1.0e-1253.13Reticulon-like protein B17 OS=Arabidopsis thaliana GN=RTNLB17 PE=2 SV=1[more]
RTNLR_ARATH6.8e-1242.47Reticulon-like protein B18 OS=Arabidopsis thaliana GN=RTNLB18 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0KBW7_CUCSA8.0e-2895.38Reticulon-like protein OS=Cucumis sativus GN=Csa_6G157090 PE=4 SV=1[more]
A0A0D2NFU5_GOSRA1.6e-1563.93Reticulon-like protein OS=Gossypium raimondii GN=B456_005G199800 PE=4 SV=1[more]
A0A0D2RIJ1_GOSRA1.6e-1563.93Reticulon-like protein OS=Gossypium raimondii GN=B456_005G199800 PE=4 SV=1[more]
A0A0D2PW79_GOSRA1.6e-1563.93Reticulon-like protein OS=Gossypium raimondii GN=B456_005G199800 PE=4 SV=1[more]
M5VGG3_PRUPE2.7e-1568.42Reticulon-like protein OS=Prunus persica GN=PRUPE_ppa014722mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449463106|ref|XP_004149275.1|4.4e-2795.38PREDICTED: reticulon-like protein B17 [Cucumis sativus][more]
gi|700191779|gb|KGN46983.1|4.4e-2795.38hypothetical protein Csa_6G157090 [Cucumis sativus][more]
gi|659094813|ref|XP_008448255.1|3.7e-2695.24PREDICTED: reticulon-like protein B17 [Cucumis melo][more]
gi|645245712|ref|XP_008229008.1|3.9e-1571.93PREDICTED: reticulon-like protein B17 [Prunus mume][more]
gi|694333049|ref|XP_009357134.1|3.9e-1571.93PREDICTED: reticulon-like protein B17 [Pyrus x bretschneideri][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa6G157090Csa6G157090gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0118288G0118288EST