CU144232 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU144232
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 8626248 .. 8626402 (+)
Sequence length	156

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGCTGCACTTGCTTATGATGAAGCTGCAAGGGCCATGTATGGCACTTTAGCTCGCCTCTAATTTTTCCCAATGTCTCAATTTCCAACCTTGCTAAAAGGAAAAGAATTATCAAGGAAGGATTCTCGTGATGAAATCAAAAGCCCTCACTCTCTTTT

Library


Library category	ESTs
gynoecious flower library	1

Homology

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BLAST of CU144232 vs. TrEMBL
Match: A0A0A0KB02_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124180 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.6e-11
Identity = 41/48 (85.42%), Postives = 41/48 (85.42%), Query Frame = 2


Query: 2   AALAYDEAARAMYGTLARL*FFPMSQFPTLLKGKELSRKDSRDEIKSP 61
           AALAYDEAARAMYGTLARL  FP    PTLLKGKELSRKDSRDEIK P
Sbjct: 102 AALAYDEAARAMYGTLARL-NFPNVSIPTLLKGKELSRKDSRDEIKRP 148

Query: 62   121
           
Sbjct: 162  148

Query: 122  146
           
Sbjct: 222  148

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BLAST of CU144232 vs. NCBI nr
Match: gi|778712752|ref|XP_011656930.1| (PREDICTED: dehydration-responsive element-binding protein 2A-like [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-11
Identity = 41/48 (85.42%), Postives = 41/48 (85.42%), Query Frame = 2


Query: 2   AALAYDEAARAMYGTLARL*FFPMSQFPTLLKGKELSRKDSRDEIKSP 61
           AALAYDEAARAMYGTLARL  FP    PTLLKGKELSRKDSRDEIK P
Sbjct: 102 AALAYDEAARAMYGTLARL-NFPNVSIPTLLKGKELSRKDSRDEIKRP 148

Query: 62   121
           
Sbjct: 162  148

Query: 122  146
           
Sbjct: 222  148

[Close]

BLAST of CU144232 vs. NCBI nr
Match: gi|659113103|ref|XP_008456436.1| (PREDICTED: putative dehydration-responsive element-binding protein 2H [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-07
Identity = 36/46 (78.26%), Postives = 36/46 (78.26%), Query Frame = 2


Query: 2   AALAYDEAARAMYGTLARL*FFPMSQFPTLLKGKELSRKDSRDEIK 61
           AALAYDEAARAMYG LARL  FP    PTLLK KELS KDS DEIK
Sbjct: 102 AALAYDEAARAMYGNLARL-NFPNVSIPTLLKEKELSTKDSPDEIK 146

Query: 62   121
           
Sbjct: 162  146

Query: 122  140
           
Sbjct: 222  146

The following BLAST results are available for this feature:

BLAST of CU144232 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB02_CUCSA	1.6e-11	85.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124180 PE=4 SV=1	[more]

BLAST of CU144232 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778712752\|ref\|XP_011656930.1\|	2.3e-11	85.42	PREDICTED: dehydration-responsive element-binding protein 2A-like [Cucumis sativ...	[more]
gi\|659113103\|ref\|XP_008456436.1\|	1.2e-07	78.26	PREDICTED: putative dehydration-responsive element-binding protein 2H [Cucumis m...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G124180	Csa6G124180	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0116340	G0116340	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 2..20 score: 2.