CU143098 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU143098
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Plant protein of unknown function (DUF946)
Location	Chr6 : 5971859 .. 5972113 (-)
Sequence length	255

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TATTAGTCTAGGGAAAATTGGACAACATGTTGGAGATTGGGAGCATATCACTCTCAGGATCTGCAACTTTACTGGAGAACTCTTTAGCATTTTACTTTTCACAGCACAGTGGTGGTGAATGGGTGGATGCTTACAACTTAGAATTCATAGAAGGAAACAAAGCCATAGTTTACTCCTCAAAGAGTGGACATGCTAGCTATCCTCGTCCTGGGCTCTACATTCAAGGCTCTTCCAAACTCGGGATTGGAATAAGGA

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU143098 vs. TrEMBL
Match: A0A0A0KDB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088000 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.3e-23
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 3


Query: 87  AFYFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHASYPRPGLYIQGSSKLGIGIR 146
           + YFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHASYPRPGLYIQGSSKLGIGIR
Sbjct: 443 SIYFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHASYPRPGLYIQGSSKLGIGIR 498

Query: 147  206
           
Sbjct: 503  498

Query: 207  255
           
Sbjct: 563  498

[Close]

BLAST of CU143098 vs. TrEMBL
Match: A0A0A0KDB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088000 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.5e-09
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 2


Query: 2   ISLGKIGQHVGDWEHITLRICNFTGELFSI 61
           ISLGKIGQHVGDWEHITLRICNFTGELFSI
Sbjct: 415 ISLGKIGQHVGDWEHITLRICNFTGELFSI 444

Query: 62   92
           
Sbjct: 475  444

HSP 2 Score: 107.8 bits (268), Expect = 6.3e-21
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 3


Query: 87  AFYFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHASYPRPGLYIQGSSKLGIGIR 146
           + YFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHAS+P PG YIQGSS LG+GIR
Sbjct: 416 SMYFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHASFPHPGTYIQGSSTLGVGIR 471

Query: 147  206
           
Sbjct: 476  471

Query: 207  255
           
Sbjct: 536  471

[Close]

BLAST of CU143098 vs. TrEMBL
Match: W9QPL3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015871 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.5e-06
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 2


Query: 2   ISLGKIGQHVGDWEHITLRICNFTGELFSI 61
           I+L KIG+H+GDWEH TLRICNFTGEL+S+
Sbjct: 388 IALSKIGEHIGDWEHFTLRICNFTGELWSM 417

Query: 62   92
           
Sbjct: 448  417

HSP 2 Score: 106.3 bits (264), Expect = 1.8e-20
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 3


Query: 87  AFYFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHASYPRPGLYIQGSSKLGIGIR 146
           + YFSQHSGGEWVDAY+LEFI GNKAIVYSSKSGHAS+P PG YIQGSSKLGIGIR
Sbjct: 415 SIYFSQHSGGEWVDAYDLEFIAGNKAIVYSSKSGHASFPHPGTYIQGSSKLGIGIR 470

Query: 147  206
           
Sbjct: 475  470

Query: 207  255
           
Sbjct: 535  470

[Close]

BLAST of CU143098 vs. TrEMBL
Match: K4CU82_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-05
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 2


Query: 2   ISLGKIGQHVGDWEHITLRICNFTGELFSI 61
           +SL K+GQHVGDWEH TLR+ NFTGEL+SI
Sbjct: 387 VSLSKVGQHVGDWEHFTLRVSNFTGELWSI 416

Query: 62   92
           
Sbjct: 447  416

HSP 2 Score: 105.1 bits (261), Expect = 4.1e-20
Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 3


Query: 87  AFYFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHASYPRPGLYIQGSSKLGIGIR 146
           + YFSQHSGGEWVDAY+LE+IEGNKAIVYSSK+GHAS+P PG YIQGS+KLGIGIR
Sbjct: 413 SIYFSQHSGGEWVDAYDLEYIEGNKAIVYSSKNGHASFPHPGCYIQGSTKLGIGIR 468

Query: 147  206
           
Sbjct: 473  468

Query: 207  255
           
Sbjct: 533  468

[Close]

BLAST of CU143098 vs. TrEMBL
Match: B9IBC4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s18710g PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-07
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 2


Query: 2   ISLGKIGQHVGDWEHITLRICNFTGELFSI 61
           ISLGKIGQHVGDWEH TLRICNFTGEL+SI
Sbjct: 385 ISLGKIGQHVGDWEHFTLRICNFTGELWSI 414

Query: 62   92
           
Sbjct: 445  414

HSP 2 Score: 104.8 bits (260), Expect = 5.4e-20
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 3


Query: 87  AFYFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHASYPRPGLYIQGSSKLGIGIR 146
           + YFSQHSGGEWVDAY+LEFI GNKAIVYSSK GHAS+P PG YIQGSSKLGIGIR
Sbjct: 415 SIYFSQHSGGEWVDAYDLEFIAGNKAIVYSSKGGHASFPHPGTYIQGSSKLGIGIR 470

Query: 147  206
           
Sbjct: 475  470

Query: 207  255
           
Sbjct: 535  470

[Close]

BLAST of CU143098 vs. NCBI nr
Match: gi|449445816|ref|XP_004140668.1| (PREDICTED: uncharacterized protein LOC101209282 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 3.3e-23
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 3


Query: 87  AFYFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHASYPRPGLYIQGSSKLGIGIR 146
           + YFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHASYPRPGLYIQGSSKLGIGIR
Sbjct: 416 SIYFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHASYPRPGLYIQGSSKLGIGIR 471

Query: 147  206
           
Sbjct: 476  471

Query: 207  255
           
Sbjct: 536  471

[Close]

BLAST of CU143098 vs. NCBI nr
Match: gi|700191168|gb|KGN46372.1| (hypothetical protein Csa_6G088000 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 3.3e-23
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 3


Query: 87  AFYFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHASYPRPGLYIQGSSKLGIGIR 146
           + YFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHASYPRPGLYIQGSSKLGIGIR
Sbjct: 443 SIYFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHASYPRPGLYIQGSSKLGIGIR 498

Query: 147  206
           
Sbjct: 503  498

Query: 207  255
           
Sbjct: 563  498

[Close]

BLAST of CU143098 vs. NCBI nr
Match: gi|659120015|ref|XP_008459966.1| (PREDICTED: uncharacterized protein LOC103498924 [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 3


Query: 87  AFYFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHASYPRPGLYIQGSSKLGIGIR 146
           + YFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHASYP PGLYIQGSSKLGIGIR
Sbjct: 416 SIYFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHASYPHPGLYIQGSSKLGIGIR 471

Query: 147  206
           
Sbjct: 476  471

Query: 207  255
           
Sbjct: 536  471

[Close]

BLAST of CU143098 vs. NCBI nr
Match: gi|703081868|ref|XP_010091803.1| (hypothetical protein L484_015871 [Morus notabilis])

HSP 1 Score: 107.8 bits (268), Expect = 9.1e-21
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 3


Query: 87  AFYFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHASYPRPGLYIQGSSKLGIGIR 146
           + YFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHAS+P PG YIQGSS LG+GIR
Sbjct: 416 SMYFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHASFPHPGTYIQGSSTLGVGIR 471

Query: 147  206
           
Sbjct: 476  471

Query: 207  255
           
Sbjct: 536  471

[Close]

BLAST of CU143098 vs. NCBI nr
Match: gi|970053518|ref|XP_015088397.1| (PREDICTED: uncharacterized protein LOC107031506 isoform X2 [Solanum pennellii])

HSP 1 Score: 106.3 bits (264), Expect = 2.6e-20
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 3


Query: 87  AFYFSQHSGGEWVDAYNLEFIEGNKAIVYSSKSGHASYPRPGLYIQGSSKLGIGIR 146
           + YFSQHSGGEWVDAY+LEFI GNKAIVYSSKSGHAS+P PG YIQGSSKLGIGIR
Sbjct: 415 SIYFSQHSGGEWVDAYDLEFIAGNKAIVYSSKSGHASFPHPGTYIQGSSKLGIGIR 470

Query: 147  206
           
Sbjct: 475  470

Query: 207  255
           
Sbjct: 535  470

The following BLAST results are available for this feature:

BLAST of CU143098 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDB1_CUCSA	2.3e-23	96.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088000 PE=4 SV=1	[more]
A0A0A0KDB1_CUCSA	9.5e-09	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088000 PE=4 SV=1	[more]
W9QPL3_9ROSA	7.5e-06	76.67	Uncharacterized protein OS=Morus notabilis GN=L484_015871 PE=4 SV=1	[more]
K4CU82_SOLLC	1.7e-05	76.67	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
B9IBC4_POPTR	1.0e-07	93.33	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s18710g PE=4 SV=1	[more]

BLAST of CU143098 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445816\|ref\|XP_004140668.1\|	3.3e-23	96.43	PREDICTED: uncharacterized protein LOC101209282 [Cucumis sativus]	[more]
gi\|700191168\|gb\|KGN46372.1\|	3.3e-23	96.43	hypothetical protein Csa_6G088000 [Cucumis sativus]	[more]
gi\|659120015\|ref\|XP_008459966.1\|	1.3e-22	94.64	PREDICTED: uncharacterized protein LOC103498924 [Cucumis melo]	[more]
gi\|703081868\|ref\|XP_010091803.1\|	9.1e-21	87.50	hypothetical protein L484_015871 [Morus notabilis]	[more]
gi\|970053518\|ref\|XP_015088397.1\|	2.6e-20	87.50	PREDICTED: uncharacterized protein LOC107031506 isoform X2 [Solanum pennellii]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR009291	Vps62

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G088000	Csa6G088000	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0103660	G0103660	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009291	Vacuolar protein sorting-associated protein 62	PFAM	PF06101	DUF946	coord: 21..76 score: 8.9
None	No IPR available	PANTHER	PTHR17204	PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	coord: 23..76 score: 2.1
None	No IPR available	PANTHER	PTHR17204:SF30	SUBFAMILY NOT NAMED	coord: 23..76 score: 2.1