CU142693 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU142693
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 15969522 .. 15969734 (-)
Sequence length	215

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CATTCGGCGACACGCAGTTTACCCTAATACCGTATACCCCTAGCTCAGCGCAGCTCGACCTCACCACCCCCAGCACTGCATGCTTTGAGCATGTGTATGCCACCAGTGCTATCCCACCAACCGTCGCTGCCACACTCGTCGTGCAGATTATCGACCCACGTATGTTCCGCTCTACCATTGCTCGTCCCCCGTGCTTGATCGTTGCAACCACCCCA

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU142693 vs. Swiss-Prot
Match: SDR3A_ARATH (Short-chain dehydrogenase reductase 3a OS=Arabidopsis thaliana GN=SDR3a PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.1e-18
Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = -2


Query: 5   GVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIALVAYTCSKHAVLGVVRSSCAELGV 64
           G  A IKH  RAMVE+  RGSI+CTTSVA+ +GG    AYT SKHA+LG+V+S+C  LG 
Sbjct: 118 GAAAFIKHAARAMVEKGTRGSIVCTTSVASEIGGPGPHAYTASKHALLGLVKSACGGLGK 177

Query: 65  YGIRVNCVSP 124
           YGIRVN V+P
Sbjct: 178 YGIRVNGVAP 187

Query: 125  184
           
Sbjct: 238  187

Query: 185  215
           
Sbjct: 298  187

[Close]

BLAST of CU142693 vs. Swiss-Prot
Match: SDR4_ARATH (Short-chain dehydrogenase reductase 4 OS=Arabidopsis thaliana GN=SDR4 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.9e-17
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = -2


Query: 5   GVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIALVAYTCSKHAVLGVVRSSCAELGV 64
           G  A IKH  R+MV    RGSI+CTTS+AA +GG    +YT SKHA+LG++RS+CA LG 
Sbjct: 156 GAAAFIKHAARSMVASGTRGSIVCTTSIAAEIGGPGPHSYTASKHALLGLIRSACAGLGQ 215

Query: 65  YGIRVNCVSP 124
           YGIRVN V+P
Sbjct: 216 YGIRVNGVAP 225

Query: 125  184
           
Sbjct: 276  225

Query: 185  215
           
Sbjct: 336  225

[Close]

BLAST of CU142693 vs. Swiss-Prot
Match: SDR3B_ARATH (Short-chain dehydrogenase reductase 3b OS=Arabidopsis thaliana GN=SDR3b PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.5e-16
Identity = 42/70 (60.00%), Postives = 49/70 (70.00%), Query Frame = -2


Query: 5   GVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIALVAYTCSKHAVLGVVRSSCAELGV 64
           G  A IKH  RAMVE+ IRGSI+CTTSVAA + G A   YT SKH +LG+++S+   LG 
Sbjct: 118 GTAAFIKHAARAMVEKGIRGSIVCTTSVAAEIAGTAPHGYTTSKHGLLGLIKSASGGLGK 177

Query: 65  YGIRVNCVSP 124
           YGIRVN V+P
Sbjct: 178 YGIRVNGVAP 187

Query: 125  184
           
Sbjct: 238  187

Query: 185  215
           
Sbjct: 298  187

[Close]

BLAST of CU142693 vs. Swiss-Prot
Match: SDR5_ARATH (Short-chain dehydrogenase reductase 5 OS=Arabidopsis thaliana GN=SDR5 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-16
Identity = 42/70 (60.00%), Postives = 48/70 (68.57%), Query Frame = -2


Query: 5   GVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIALVAYTCSKHAVLGVVRSSCAELGV 64
           G  A IKH  R+MV    RGSI+CTTSV A +GG    +YT SKHA+LG+VRS+C  LG 
Sbjct: 118 GAAAFIKHAARSMVASGTRGSIVCTTSVTAEIGGPGPHSYTASKHALLGLVRSACGGLGK 177

Query: 65  YGIRVNCVSP 124
           YGIRVN V+P
Sbjct: 178 YGIRVNGVAP 187

Query: 125  184
           
Sbjct: 238  187

Query: 185  215
           
Sbjct: 298  187

[Close]

BLAST of CU142693 vs. Swiss-Prot
Match: SDR3C_ARATH (Short-chain dehydrogenase reductase 3c OS=Arabidopsis thaliana GN=SDR3c PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.6e-16
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = -2


Query: 5   GVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIALVAYTCSKHAVLGVVRSSCAELGV 64
           G  A IKH  RAMVE+  RGSI+CTTSV+A +GG     YT SKH ++G++RS+C +LG 
Sbjct: 118 GAAAFIKHAARAMVEKGTRGSIVCTTSVSAEIGG-GHHGYTASKHGLVGLIRSACGDLGK 177

Query: 65  YGIRVNCVSP 124
           YGIRVN V+P
Sbjct: 178 YGIRVNGVAP 186

Query: 125  184
           
Sbjct: 238  186

Query: 185  215
           
Sbjct: 298  186

[Close]

BLAST of CU142693 vs. TrEMBL
Match: A0A0A0K851_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G414460 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.6e-31
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = -2


Query: 2   GVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIALVAYTCSKHAVLGVVRSSCAELGV 61
           GVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIAL+AYTCSKHAVLGVVRSSCAELGV
Sbjct: 119 GVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIALMAYTCSKHAVLGVVRSSCAELGV 178

Query: 62  YGIRVNCVSPN 121
           YGIRVNCVSPN
Sbjct: 179 YGIRVNCVSPN 189

Query: 122  181
           
Sbjct: 239  189

Query: 182  215
           
Sbjct: 299  189

[Close]

BLAST of CU142693 vs. TrEMBL
Match: A0A0D2PJ65_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G146400 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-21
Identity = 52/70 (74.29%), Postives = 59/70 (84.29%), Query Frame = -2


Query: 5   GVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIALVAYTCSKHAVLGVVRSSCAELGV 64
           GV ATIKH  RAMV +NIRGSIICT SVA+ VGGIA + YT SKHAV+G+VR +C+ELG 
Sbjct: 118 GVAATIKHAARAMVAKNIRGSIICTASVASCVGGIATIGYTTSKHAVVGLVRGACSELGG 177

Query: 65  YGIRVNCVSP 124
           YGIRVNCVSP
Sbjct: 178 YGIRVNCVSP 187

Query: 125  184
           
Sbjct: 238  187

Query: 185  215
           
Sbjct: 298  187

[Close]

BLAST of CU142693 vs. TrEMBL
Match: A0A0D2QHX5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G146400 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-21
Identity = 52/70 (74.29%), Postives = 59/70 (84.29%), Query Frame = -2


Query: 5   GVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIALVAYTCSKHAVLGVVRSSCAELGV 64
           GV ATIKH  RAMV +NIRGSIICT SVA+ VGGIA + YT SKHAV+G+VR +C+ELG 
Sbjct: 115 GVAATIKHAARAMVAKNIRGSIICTASVASCVGGIATIGYTTSKHAVVGLVRGACSELGG 174

Query: 65  YGIRVNCVSP 124
           YGIRVNCVSP
Sbjct: 175 YGIRVNCVSP 184

Query: 125  184
           
Sbjct: 235  184

Query: 185  215
           
Sbjct: 295  184

[Close]

BLAST of CU142693 vs. TrEMBL
Match: A0A0B0NZC2_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_00912 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.4e-21
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = -2


Query: 5   GVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIALVAYTCSKHAVLGVVRSSCAELGV 64
           GV ATIKH  RAMV +NIRGSIICT SVA+ +GGIA + YT SKHAV+G+VR +C+ELG 
Sbjct: 118 GVAATIKHAARAMVAKNIRGSIICTASVASCIGGIATIGYTTSKHAVVGLVRGACSELGG 177

Query: 65  YGIRVNCVSP 124
           YGIRVNCVSP
Sbjct: 178 YGIRVNCVSP 187

Query: 125  184
           
Sbjct: 238  187

Query: 185  215
           
Sbjct: 298  187

[Close]

BLAST of CU142693 vs. TrEMBL
Match: A0A067H4S0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046931mg PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.1e-21
Identity = 50/70 (71.43%), Postives = 62/70 (88.57%), Query Frame = -2


Query: 5   GVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIALVAYTCSKHAVLGVVRSSCAELGV 64
           GV ATIKH  RAMV++NIRGSIICTTSVA+++GG A  AYT SKHA++G+VR++C+ELG 
Sbjct: 113 GVAATIKHAARAMVDKNIRGSIICTTSVASSLGGTAPHAYTTSKHALVGLVRTACSELGA 172

Query: 65  YGIRVNCVSP 124
           YGIRVNC+SP
Sbjct: 173 YGIRVNCISP 182

Query: 125  184
           
Sbjct: 233  182

Query: 185  215
           
Sbjct: 293  182

[Close]

BLAST of CU142693 vs. NCBI nr
Match: gi|778728353|ref|XP_004136145.2| (PREDICTED: short-chain dehydrogenase reductase 3b-like [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 4.1e-30
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = -2


Query: 2   GVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIALVAYTCSKHAVLGVVRSSCAELGV 61
           GVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIAL+AYTCSKHAVLGVVRSSCAELGV
Sbjct: 119 GVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIALMAYTCSKHAVLGVVRSSCAELGV 178

Query: 62  YGIRVNCVSPN 121
           YGIRVNCVSPN
Sbjct: 179 YGIRVNCVSPN 189

Query: 122  181
           
Sbjct: 239  189

Query: 182  215
           
Sbjct: 299  189

[Close]

BLAST of CU142693 vs. NCBI nr
Match: gi|659122931|ref|XP_008461398.1| (PREDICTED: short-chain dehydrogenase reductase 3b-like [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 1.9e-27
Identity = 64/70 (91.43%), Postives = 69/70 (98.57%), Query Frame = -2


Query: 5   GVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIALVAYTCSKHAVLGVVRSSCAELGV 64
           GVV++IKHGG+AMVERNIRGSIICTTSVAATVGG+AL+AYTCSKHAVLGVVRSSCAELG 
Sbjct: 121 GVVSSIKHGGKAMVERNIRGSIICTTSVAATVGGMALMAYTCSKHAVLGVVRSSCAELGA 180

Query: 65  YGIRVNCVSP 124
           YGIRVNCVSP
Sbjct: 181 YGIRVNCVSP 190

Query: 125  184
           
Sbjct: 241  190

Query: 185  215
           
Sbjct: 301  190

[Close]

BLAST of CU142693 vs. NCBI nr
Match: gi|763739341|gb|KJB06840.1| (hypothetical protein B456_001G146400 [Gossypium raimondii])

HSP 1 Score: 105.9 bits (263), Expect = 2.9e-20
Identity = 52/70 (74.29%), Postives = 59/70 (84.29%), Query Frame = -2


Query: 5   GVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIALVAYTCSKHAVLGVVRSSCAELGV 64
           GV ATIKH  RAMV +NIRGSIICT SVA+ VGGIA + YT SKHAV+G+VR +C+ELG 
Sbjct: 115 GVAATIKHAARAMVAKNIRGSIICTASVASCVGGIATIGYTTSKHAVVGLVRGACSELGG 174

Query: 65  YGIRVNCVSP 124
           YGIRVNCVSP
Sbjct: 175 YGIRVNCVSP 184

Query: 125  184
           
Sbjct: 235  184

Query: 185  215
           
Sbjct: 295  184

[Close]

BLAST of CU142693 vs. NCBI nr
Match: gi|823124411|ref|XP_012480004.1| (PREDICTED: short-chain dehydrogenase reductase 3b-like [Gossypium raimondii])

HSP 1 Score: 105.9 bits (263), Expect = 2.9e-20
Identity = 52/70 (74.29%), Postives = 59/70 (84.29%), Query Frame = -2


Query: 5   GVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIALVAYTCSKHAVLGVVRSSCAELGV 64
           GV ATIKH  RAMV +NIRGSIICT SVA+ VGGIA + YT SKHAV+G+VR +C+ELG 
Sbjct: 118 GVAATIKHAARAMVAKNIRGSIICTASVASCVGGIATIGYTTSKHAVVGLVRGACSELGG 177

Query: 65  YGIRVNCVSP 124
           YGIRVNCVSP
Sbjct: 178 YGIRVNCVSP 187

Query: 125  184
           
Sbjct: 238  187

Query: 185  215
           
Sbjct: 298  187

[Close]

BLAST of CU142693 vs. NCBI nr
Match: gi|728838732|gb|KHG18175.1| (hypothetical protein F383_00912 [Gossypium arboreum])

HSP 1 Score: 105.5 bits (262), Expect = 3.8e-20
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = -2


Query: 5   GVVATIKHGGRAMVERNIRGSIICTTSVAATVGGIALVAYTCSKHAVLGVVRSSCAELGV 64
           GV ATIKH  RAMV +NIRGSIICT SVA+ +GGIA + YT SKHAV+G+VR +C+ELG 
Sbjct: 118 GVAATIKHAARAMVAKNIRGSIICTASVASCIGGIATIGYTTSKHAVVGLVRGACSELGG 177

Query: 65  YGIRVNCVSP 124
           YGIRVNCVSP
Sbjct: 178 YGIRVNCVSP 187

Query: 125  184
           
Sbjct: 238  187

Query: 185  215
           
Sbjct: 298  187

The following BLAST results are available for this feature:

BLAST of CU142693 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SDR3A_ARATH	6.1e-18	62.86	Short-chain dehydrogenase reductase 3a OS=Arabidopsis thaliana GN=SDR3a PE=2 SV=...	[more]
SDR4_ARATH	3.9e-17	60.00	Short-chain dehydrogenase reductase 4 OS=Arabidopsis thaliana GN=SDR4 PE=2 SV=1	[more]
SDR3B_ARATH	1.5e-16	60.00	Short-chain dehydrogenase reductase 3b OS=Arabidopsis thaliana GN=SDR3b PE=2 SV=...	[more]
SDR5_ARATH	2.0e-16	60.00	Short-chain dehydrogenase reductase 5 OS=Arabidopsis thaliana GN=SDR5 PE=3 SV=1	[more]
SDR3C_ARATH	2.6e-16	58.57	Short-chain dehydrogenase reductase 3c OS=Arabidopsis thaliana GN=SDR3c PE=3 SV=...	[more]

BLAST of CU142693 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K851_CUCSA	2.6e-31	98.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G414460 PE=4 SV=1	[more]
A0A0D2PJ65_GOSRA	1.8e-21	74.29	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G146400 PE=4 SV=1	[more]
A0A0D2QHX5_GOSRA	1.8e-21	74.29	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G146400 PE=4 SV=1	[more]
A0A0B0NZC2_GOSAR	2.4e-21	72.86	Uncharacterized protein OS=Gossypium arboreum GN=F383_00912 PE=4 SV=1	[more]
A0A067H4S0_CITSI	3.1e-21	71.43	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046931mg PE=4 SV=1	[more]

BLAST of CU142693 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778728353\|ref\|XP_004136145.2\|	4.1e-30	98.59	PREDICTED: short-chain dehydrogenase reductase 3b-like [Cucumis sativus]	[more]
gi\|659122931\|ref\|XP_008461398.1\|	1.9e-27	91.43	PREDICTED: short-chain dehydrogenase reductase 3b-like [Cucumis melo]	[more]
gi\|763739341\|gb\|KJB06840.1\|	2.9e-20	74.29	hypothetical protein B456_001G146400 [Gossypium raimondii]	[more]
gi\|823124411\|ref\|XP_012480004.1\|	2.9e-20	74.29	PREDICTED: short-chain dehydrogenase reductase 3b-like [Gossypium raimondii]	[more]
gi\|728838732\|gb\|KHG18175.1\|	3.8e-20	72.86	hypothetical protein F383_00912 [Gossypium arboreum]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G414460	Csa7G414460	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0098888	G0098888	EST