CU142683 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU142683
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Serine protease
Location	Chr1 : 2901765 .. 2902574 (+)
Sequence length	206

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CATTGGCAACCCTTTTGGGTATGAGAAGACACTAACAGCAGGGGTGATCAGCGGATTGGGTAGAGAAATTCCATCACCAAATGGAAGGGCCATAAGGGGAGCTATTCAGACAGATGCTGCTATTAGTGCAGGAAATTCGAGGGGGGGTCCTTTTGGTTGACTCGTACGGTCAGGTTATTGGAGTCAACACAGCTAACTTTCACTCG

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU142683 vs. Swiss-Prot
Match: DEGP5_ARATH (Protease Do-like 5, chloroplastic OS=Arabidopsis thaliana GN=DEGP5 PE=1 SV=3)

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-14
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 2


Query: 2   IGNPFGYEKTLTAGVISGLGREIPSPNGRAIRGAIQTDAAISAGNSRGGP 61
           IGNP+GYE TLT GV+SGLGREIPSPNG++I  AIQTDA I++GNS GGP
Sbjct: 221 IGNPYGYENTLTIGVVSGLGREIPSPNGKSISEAIQTDADINSGNS-GGP 269

Query: 62   121
           
Sbjct: 281  269

Query: 122  152
           
Sbjct: 341  269

HSP 2 Score: 28.9 bits (63), Expect = 2.7e+01
Identity = 12/16 (75.00%), Postives = 11/16 (68.75%), Query Frame = 3


Query: 153 LVDSYGQVIGVNTANF 201
           L+DSYG  IGVNTA F
Sbjct: 270 LLDSYGHTIGVNTATF 285

[Close]

BLAST of CU142683 vs. Swiss-Prot
Match: DEGP8_ARATH (Protease Do-like 8, chloroplastic OS=Arabidopsis thaliana GN=DEGP8 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.4e-10
Identity = 34/50 (68.00%), Postives = 36/50 (72.00%), Query Frame = 2


Query: 2   IGNPFGYEKTLTAGVISGLGREIPSPNGRAIRGAIQTDAAISAGNSRGGP 61
           IGNPFG++ TLT GVISGL R+I S  G  I G IQTDAAI+ GNS GGP
Sbjct: 247 IGNPFGFDHTLTVGVISGLNRDIFSQTGVTIGGGIQTDAAINPGNS-GGP 295

Query: 62   121
           
Sbjct: 307  295

Query: 122  152
           
Sbjct: 367  295

[Close]

BLAST of CU142683 vs. Swiss-Prot
Match: DEGP1_ARATH (Protease Do-like 1, chloroplastic OS=Arabidopsis thaliana GN=DEGP1 PE=1 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 3.8e-09
Identity = 35/51 (68.63%), Postives = 36/51 (70.59%), Query Frame = 2


Query: 2   IGNPFGYEKTLTAGVISGLGREIPS-PNGRAIRGAIQTDAAISAGNSRGGP 61
           IGNPFG + TLT GVISGL REI S   GR I+  IQTDAAI+ GNS GGP
Sbjct: 236 IGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNS-GGP 285

Query: 62   121
           
Sbjct: 296  285

Query: 122  152
           
Sbjct: 356  285

[Close]

BLAST of CU142683 vs. Swiss-Prot
Match: DEGPL_MARMS (Probable periplasmic serine endoprotease DegP-like OS=Marinomonas sp. (strain MWYL1) GN=Mmwyl1_1102 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.9e-06
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 2


Query: 2   IGNPFGYEKTLTAGVISGLGREIPSPNGRAIRGAIQTDAAISAGNSRGGP 61
           IG+PFG++ T+TAG++S  GR +PS N       IQTD AI+ GNS GGP
Sbjct: 175 IGSPFGFDYTVTAGIVSATGRSLPSDNYVPF---IQTDVAINPGNS-GGP 220

Query: 62   121
           
Sbjct: 235  220

Query: 122  152
           
Sbjct: 295  220

[Close]

BLAST of CU142683 vs. Swiss-Prot
Match: DEGPL_HAHCH (Probable periplasmic serine endoprotease DegP-like OS=Hahella chejuensis (strain KCTC 2396) GN=mucD PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.1e-06
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 2


Query: 2   IGNPFGYEKTLTAGVISGLGREIPSPNGRAIRGAIQTDAAISAGNSRGGP 61
           IG+PFG+E T+TAG++S  GR +P+ N       IQTD AI+ GNS GGP
Sbjct: 169 IGSPFGFEYTVTAGIVSAKGRSLPNENYVPF---IQTDVAINPGNS-GGP 214

Query: 62   121
           
Sbjct: 229  214

Query: 122  152
           
Sbjct: 289  214

[Close]

BLAST of CU142683 vs. TrEMBL
Match: A0A0A0LV65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025870 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-17
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 2


Query: 2   IGNPFGYEKTLTAGVISGLGREIPSPNGRAIRGAIQTDAAISAGNSRGGP 61
           IGNPFGYEKTLTAGVISGLGREIPSPNGRAIRGAIQTDAAISAGNS GGP
Sbjct: 202 IGNPFGYEKTLTAGVISGLGREIPSPNGRAIRGAIQTDAAISAGNS-GGP 250

Query: 62   121
           
Sbjct: 262  250

Query: 122  152
           
Sbjct: 322  250

[Close]

BLAST of CU142683 vs. TrEMBL
Match: A0A0A0LV65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025870 PE=4 SV=1)

HSP 1 Score: 31.6 bits (70), Expect = 4.7e+02
Identity = 14/16 (87.50%), Postives = 14/16 (87.50%), Query Frame = 3


Query: 153 LVDSYGQVIGVNTANF 201
           LVDSYG VIGVNTA F
Sbjct: 251 LVDSYGHVIGVNTATF 266

HSP 2 Score: 91.7 bits (226), Expect = 3.8e-16
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 2


Query: 2   IGNPFGYEKTLTAGVISGLGREIPSPNGRAIRGAIQTDAAISAGNSRGGP 61
           IGNPFGYE TLT GV+SGLGREIPSPNGRAIRGAIQTDAAI+AGNS GGP
Sbjct: 215 IGNPFGYENTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINAGNS-GGP 263

Query: 62   121
           
Sbjct: 275  263

Query: 122  152
           
Sbjct: 335  263

[Close]

BLAST of CU142683 vs. TrEMBL
Match: A0A0D2VI33_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G045700 PE=4 SV=1)

HSP 1 Score: 31.2 bits (69), Expect = 6.1e+02
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 3


Query: 153 LVDSYGQVIGVNTANF 201
           L+DSYG VIGVNTA F
Sbjct: 264 LIDSYGHVIGVNTATF 279

HSP 2 Score: 91.7 bits (226), Expect = 3.8e-16
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 2


Query: 2   IGNPFGYEKTLTAGVISGLGREIPSPNGRAIRGAIQTDAAISAGNSRGGP 61
           IGNPFGYE TLT GV+SGLGREIPSPNGRAIRGAIQTDAAI+AGNS GGP
Sbjct: 214 IGNPFGYENTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINAGNS-GGP 262

Query: 62   121
           
Sbjct: 274  262

Query: 122  152
           
Sbjct: 334  262

[Close]

BLAST of CU142683 vs. TrEMBL
Match: A0A061GE60_THECC (Protease degS, putative isoform 2 OS=Theobroma cacao GN=TCM_029456 PE=4 SV=1)

HSP 1 Score: 31.2 bits (69), Expect = 6.1e+02
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 3


Query: 153 LVDSYGQVIGVNTANF 201
           L+DSYG VIGVNTA F
Sbjct: 263 LIDSYGHVIGVNTATF 278

HSP 2 Score: 91.7 bits (226), Expect = 3.8e-16
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 2


Query: 2   IGNPFGYEKTLTAGVISGLGREIPSPNGRAIRGAIQTDAAISAGNSRGGP 61
           IGNPFGYE TLT GV+SGLGREIPSPNGRAIRGAIQTDAAI+AGNS GGP
Sbjct: 214 IGNPFGYENTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINAGNS-GGP 262

Query: 62   121
           
Sbjct: 274  262

Query: 122  152
           
Sbjct: 334  262

[Close]

BLAST of CU142683 vs. TrEMBL
Match: A0A061GEY2_THECC (Protease degS, putative isoform 1 OS=Theobroma cacao GN=TCM_029456 PE=4 SV=1)

HSP 1 Score: 31.2 bits (69), Expect = 6.1e+02
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 3


Query: 153 LVDSYGQVIGVNTANF 201
           L+DSYG VIGVNTA F
Sbjct: 263 LIDSYGHVIGVNTATF 278

HSP 2 Score: 90.5 bits (223), Expect = 8.5e-16
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 2


Query: 2   IGNPFGYEKTLTAGVISGLGREIPSPNGRAIRGAIQTDAAISAGNSRGGP 61
           IGNP+GYE TLT GVISGLGREIPSPNGRAIRGAIQTDAAI+AGNS GGP
Sbjct: 206 IGNPYGYEHTLTTGVISGLGREIPSPNGRAIRGAIQTDAAINAGNS-GGP 254

Query: 62   121
           
Sbjct: 266  254

Query: 122  152
           
Sbjct: 326  254

[Close]

BLAST of CU142683 vs. NCBI nr
Match: gi|449439571|ref|XP_004137559.1| (PREDICTED: protease Do-like 5, chloroplastic [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-17
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 2


Query: 2   IGNPFGYEKTLTAGVISGLGREIPSPNGRAIRGAIQTDAAISAGNSRGGP 61
           IGNPFGYEKTLTAGVISGLGREIPSPNGRAIRGAIQTDAAISAGNS GGP
Sbjct: 202 IGNPFGYEKTLTAGVISGLGREIPSPNGRAIRGAIQTDAAISAGNS-GGP 250

Query: 62   121
           
Sbjct: 262  250

Query: 122  152
           
Sbjct: 322  250

[Close]

BLAST of CU142683 vs. NCBI nr
Match: gi|659068445|ref|XP_008444456.1| (PREDICTED: protease Do-like 5, chloroplastic [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-17
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 2


Query: 2   IGNPFGYEKTLTAGVISGLGREIPSPNGRAIRGAIQTDAAISAGNSRGGP 61
           IGNPFGYEKTLTAGVISGLGREIPSPNGRAIRGAIQTDAAISAGNS GGP
Sbjct: 203 IGNPFGYEKTLTAGVISGLGREIPSPNGRAIRGAIQTDAAISAGNS-GGP 251

Query: 62   121
           
Sbjct: 263  251

Query: 122  152
           
Sbjct: 323  251

[Close]

BLAST of CU142683 vs. NCBI nr
Match: gi|823244928|ref|XP_012455138.1| (PREDICTED: protease Do-like 5, chloroplastic [Gossypium raimondii])

HSP 1 Score: 91.7 bits (226), Expect = 5.5e-16
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 2


Query: 2   IGNPFGYEKTLTAGVISGLGREIPSPNGRAIRGAIQTDAAISAGNSRGGP 61
           IGNPFGYE TLT GV+SGLGREIPSPNGRAIRGAIQTDAAI+AGNS GGP
Sbjct: 215 IGNPFGYENTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINAGNS-GGP 263

Query: 62   121
           
Sbjct: 275  263

Query: 122  152
           
Sbjct: 335  263

[Close]

BLAST of CU142683 vs. NCBI nr
Match: gi|590622425|ref|XP_007025046.1| (Protease degS, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 91.7 bits (226), Expect = 5.5e-16
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 2


Query: 2   IGNPFGYEKTLTAGVISGLGREIPSPNGRAIRGAIQTDAAISAGNSRGGP 61
           IGNPFGYE TLT GV+SGLGREIPSPNGRAIRGAIQTDAAI+AGNS GGP
Sbjct: 214 IGNPFGYENTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINAGNS-GGP 262

Query: 62   121
           
Sbjct: 274  262

Query: 122  152
           
Sbjct: 334  262

[Close]

BLAST of CU142683 vs. NCBI nr
Match: gi|590622421|ref|XP_007025045.1| (Protease degS, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 91.7 bits (226), Expect = 5.5e-16
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 2


Query: 2   IGNPFGYEKTLTAGVISGLGREIPSPNGRAIRGAIQTDAAISAGNSRGGP 61
           IGNPFGYE TLT GV+SGLGREIPSPNGRAIRGAIQTDAAI+AGNS GGP
Sbjct: 214 IGNPFGYENTLTTGVVSGLGREIPSPNGRAIRGAIQTDAAINAGNS-GGP 262

Query: 62   121
           
Sbjct: 274  262

Query: 122  152
           
Sbjct: 334  262

The following BLAST results are available for this feature:

BLAST of CU142683 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DEGP5_ARATH	2.3e-14	76.00	Protease Do-like 5, chloroplastic OS=Arabidopsis thaliana GN=DEGP5 PE=1 SV=3	[more]
DEGP8_ARATH	3.4e-10	68.00	Protease Do-like 8, chloroplastic OS=Arabidopsis thaliana GN=DEGP8 PE=1 SV=1	[more]
DEGP1_ARATH	3.8e-09	68.63	Protease Do-like 1, chloroplastic OS=Arabidopsis thaliana GN=DEGP1 PE=1 SV=2	[more]
DEGPL_MARMS	3.9e-06	54.00	Probable periplasmic serine endoprotease DegP-like OS=Marinomonas sp. (strain MW...	[more]
DEGPL_HAHCH	5.1e-06	54.00	Probable periplasmic serine endoprotease DegP-like OS=Hahella chejuensis (strain...	[more]

BLAST of CU142683 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV65_CUCSA	1.2e-17	98.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025870 PE=4 SV=1	[more]
A0A0A0LV65_CUCSA	4.7e+02	87.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025870 PE=4 SV=1	[more]
A0A0D2VI33_GOSRA	6.1e+02	81.25	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G045700 PE=4 SV=1	[more]
A0A061GE60_THECC	6.1e+02	81.25	Protease degS, putative isoform 2 OS=Theobroma cacao GN=TCM_029456 PE=4 SV=1	[more]
A0A061GEY2_THECC	6.1e+02	81.25	Protease degS, putative isoform 1 OS=Theobroma cacao GN=TCM_029456 PE=4 SV=1	[more]

BLAST of CU142683 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439571\|ref\|XP_004137559.1\|	1.7e-17	98.00	PREDICTED: protease Do-like 5, chloroplastic [Cucumis sativus]	[more]
gi\|659068445\|ref\|XP_008444456.1\|	1.7e-17	98.00	PREDICTED: protease Do-like 5, chloroplastic [Cucumis melo]	[more]
gi\|823244928\|ref\|XP_012455138.1\|	5.5e-16	90.00	PREDICTED: protease Do-like 5, chloroplastic [Gossypium raimondii]	[more]
gi\|590622425\|ref\|XP_007025046.1\|	5.5e-16	90.00	Protease degS, putative isoform 2 [Theobroma cacao]	[more]
gi\|590622421\|ref\|XP_007025045.1\|	5.5e-16	90.00	Protease degS, putative isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR009003	Peptidase_S1_PA

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G025870	Csa1G025870	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0098787	G0098787	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009003	Peptidase S1, PA clan	unknown	SSF50494	Trypsin-like serine proteases	coord: 2..67 score: 1.04
None	No IPR available	GENE3D	G3DSA:2.40.10.10		coord: 2..68 score: 2.1
None	No IPR available	PANTHER	PTHR22939	SERINE PROTEASE FAMILY S1C HTRA-RELATED	coord: 2..67 score: 2.5
None	No IPR available	PANTHER	PTHR22939:SF76	PROTEASE DO-LIKE 5, CHLOROPLASTIC	coord: 2..67 score: 2.5
None	No IPR available	PFAM	PF13365	Trypsin_2	coord: 2..62 score: 5.