CU142480 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU142480
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Xyloglucan 6-xylosyltransferase
Location	Chr1 : 1561166 .. 1561425 (+)
Sequence length	270

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTGAGTGGATTTGGTGGATGGACAGTTGTATTGTCTTTTATTTTACTTGATATGGTACTTGAGATTCCTTTGGAAAATATGATAACTATAACTTGGTCGTTCATGGTTACCCTGATTTGATGTTCAACCAAAAGTCCTGGATTGCACTCAATACAGGAAGCTTTTTGTTTAGGAATTGTCAGTGGTCTTTGGATTTGCTGGATGCTTGGGCTCCAATGGGACCAAGGGTCCTATTCGAGAAGAGGCTGGCAAGATTTTGACTGCTAAACG

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU142480 vs. Swiss-Prot
Match: XXT3_ARATH (Probable xyloglucan 6-xylosyltransferase 3 OS=Arabidopsis thaliana GN=XXT3 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.3e-27
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 3


Query: 3   EWIWWMDSCIVFYFT*YGT*DSFGKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 62
           EWIWWMDS  +F    +       +Y+N+NLV+HGYPDL+F+QKSWIALNTGSFLFRNCQ
Sbjct: 221 EWIWWMDSDALFTDMVFEI--PLSRYENHNLVIHGYPDLLFDQKSWIALNTGSFLFRNCQ 280

Query: 63  WSLDLLDAWAPMGPR 122
           WSLDLLDAWAPMGP+
Sbjct: 281 WSLDLLDAWAPMGPK 293

Query: 123  182
           
Sbjct: 341  293

Query: 183  228
           
Sbjct: 401  293

HSP 2 Score: 33.1 bits (74), Expect = 1.9e+00
Identity = 15/16 (93.75%), Postives = 13/16 (81.25%), Query Frame = 2


Query: 218 GTKGPIREEAGKILTA 266
           G KGPIREEAGKILTA
Sbjct: 291 GPKGPIREEAGKILTA 306

[Close]

BLAST of CU142480 vs. Swiss-Prot
Match: XXT4_ARATH (Xyloglucan 6-xylosyltransferase 4 OS=Arabidopsis thaliana GN=XXT4 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.6e-26
Identity = 51/75 (68.00%), Postives = 58/75 (77.33%), Query Frame = 3


Query: 3   EWIWWMDSCIVFYFT*YGT*DSFGKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 62
           EWIWWMDS  +F    +       +Y+N+NLV+HGYPDL+FNQKSW+ALNTG FL RNCQ
Sbjct: 280 EWIWWMDSDALFTDILFEI--PLPRYENHNLVIHGYPDLLFNQKSWVALNTGIFLLRNCQ 339

Query: 63  WSLDLLDAWAPMGPR 122
           WSLDLLDAWAPMGP+
Sbjct: 340 WSLDLLDAWAPMGPK 352

Query: 123  182
           
Sbjct: 400  352

Query: 183  228
           
Sbjct: 460  352

[Close]

BLAST of CU142480 vs. Swiss-Prot
Match: XXT5_ARATH (Probable xyloglucan 6-xylosyltransferase 5 OS=Arabidopsis thaliana GN=XXT5 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.2e-25
Identity = 51/75 (68.00%), Postives = 57/75 (76.00%), Query Frame = 3


Query: 3   EWIWWMDSCIVFYFT*YGT*DSFGKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 62
           EWIWWMDS  +F    +       +Y  +NLV+HGYPDL+F+QKSWIALNTGSFL RNCQ
Sbjct: 222 EWIWWMDSDALFTDILFQI--PLARYQKHNLVIHGYPDLLFDQKSWIALNTGSFLLRNCQ 281

Query: 63  WSLDLLDAWAPMGPR 122
           WSLDLLDAWAPMGP+
Sbjct: 282 WSLDLLDAWAPMGPK 294

Query: 123  182
           
Sbjct: 342  294

Query: 183  228
           
Sbjct: 402  294

HSP 2 Score: 31.6 bits (70), Expect = 5.5e+00
Identity = 13/16 (81.25%), Postives = 13/16 (81.25%), Query Frame = 2


Query: 218 GTKGPIREEAGKILTA 266
           G KGPIR+EAGK+LTA
Sbjct: 292 GPKGPIRDEAGKVLTA 307

[Close]

BLAST of CU142480 vs. Swiss-Prot
Match: GT3_ORYSI (Probable glycosyltransferase 3 OS=Oryza sativa subsp. indica GN=GT3 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-23
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 3


Query: 3   EWIWWMDSCIVFYFT*YGT*DSFGKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 62
           EW+WWMDS  +F    +       +YD  NLV+HGYP+L+F ++SWIALNTGSFL RNCQ
Sbjct: 232 EWVWWMDSDALFTDMAFEL--PLARYDTSNLVIHGYPELLFAKRSWIALNTGSFLLRNCQ 291

Query: 63  WSLDLLDAWAPMGPR 122
           WSL+LLDAWAPMGP+
Sbjct: 292 WSLELLDAWAPMGPK 304

Query: 123  182
           
Sbjct: 352  304

Query: 183  228
           
Sbjct: 412  304

[Close]

BLAST of CU142480 vs. Swiss-Prot
Match: GT3_ORYSJ (Probable glycosyltransferase 3 OS=Oryza sativa subsp. japonica GN=GT3 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-23
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 3


Query: 3   EWIWWMDSCIVFYFT*YGT*DSFGKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 62
           EW+WWMDS  +F    +       +YD  NLV+HGYP+L+F ++SWIALNTGSFL RNCQ
Sbjct: 232 EWVWWMDSDALFTDMAFEL--PLARYDTSNLVIHGYPELLFAKRSWIALNTGSFLLRNCQ 291

Query: 63  WSLDLLDAWAPMGPR 122
           WSL+LLDAWAPMGP+
Sbjct: 292 WSLELLDAWAPMGPK 304

Query: 123  182
           
Sbjct: 352  304

Query: 183  228
           
Sbjct: 412  304

[Close]

BLAST of CU142480 vs. TrEMBL
Match: A5B3I5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027037 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-27
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 3


Query: 3   EWIWWMDSCIVFYFT*YGT*DSFGKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 62
           EWIWWMDS  +F    +       KYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ
Sbjct: 216 EWIWWMDSDALFTDMVFEI--PLSKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 275

Query: 63  WSLDLLDAWAPMGPR 122
           WSLDLLDAWAPMGP+
Sbjct: 276 WSLDLLDAWAPMGPK 288

Query: 123  182
           
Sbjct: 336  288

Query: 183  228
           
Sbjct: 396  288

[Close]

BLAST of CU142480 vs. TrEMBL
Match: A5B3I5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027037 PE=4 SV=1)

HSP 1 Score: 32.0 bits (71), Expect = 4.7e+02
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 2


Query: 218 GTKGPIREEAGKILTA 266
           G KGPIR+EAGKILTA
Sbjct: 286 GPKGPIRDEAGKILTA 301

HSP 2 Score: 129.4 bits (324), Expect = 2.2e-27
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 3


Query: 3   EWIWWMDSCIVFYFT*YGT*DSFGKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 62
           EWIWWMDS  +F    +       KYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ
Sbjct: 216 EWIWWMDSDALFTDMVFEI--PLSKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 275

Query: 63  WSLDLLDAWAPMGPR 122
           WSLDLLDAWAPMGP+
Sbjct: 276 WSLDLLDAWAPMGPK 288

Query: 123  182
           
Sbjct: 336  288

Query: 183  228
           
Sbjct: 396  288

[Close]

BLAST of CU142480 vs. TrEMBL
Match: F6GT58_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g06590 PE=4 SV=1)

HSP 1 Score: 32.0 bits (71), Expect = 4.7e+02
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 2


Query: 218 GTKGPIREEAGKILTA 266
           G KGPIR+EAGKILTA
Sbjct: 286 GPKGPIRDEAGKILTA 301

HSP 2 Score: 128.6 bits (322), Expect = 3.7e-27
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 3


Query: 3   EWIWWMDSCIVFYFT*YGT*DSFGKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 62
           EWIWWMDS  +F    +       KYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ
Sbjct: 222 EWIWWMDSDALFTDMVFEI--PLEKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 281

Query: 63  WSLDLLDAWAPMGPR 122
           WSLDLLDAWAPMGP+
Sbjct: 282 WSLDLLDAWAPMGPK 294

Query: 123  182
           
Sbjct: 342  294

Query: 183  228
           
Sbjct: 402  294

[Close]

BLAST of CU142480 vs. TrEMBL
Match: A0A0A0LRQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009930 PE=4 SV=1)

HSP 1 Score: 33.1 bits (74), Expect = 2.1e+02
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 2


Query: 218 GTKGPIREEAGKILTA 266
           G KGPIREEAGKILTA
Sbjct: 292 GPKGPIREEAGKILTA 307

HSP 2 Score: 128.6 bits (322), Expect = 3.7e-27
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 3


Query: 3   EWIWWMDSCIVFYFT*YGT*DSFGKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 62
           EWIWWMDS  +F    +       KYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ
Sbjct: 222 EWIWWMDSDALFTDMVFEI--PLEKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 281

Query: 63  WSLDLLDAWAPMGPR 122
           WSLDLLDAWAPMGP+
Sbjct: 282 WSLDLLDAWAPMGPK 294

Query: 123  182
           
Sbjct: 342  294

Query: 183  228
           
Sbjct: 402  294

[Close]

BLAST of CU142480 vs. TrEMBL
Match: A0A0A0LP65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G010930 PE=4 SV=1)

HSP 1 Score: 33.1 bits (74), Expect = 2.1e+02
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 2


Query: 218 GTKGPIREEAGKILTA 266
           G KGPIREEAGKILTA
Sbjct: 292 GPKGPIREEAGKILTA 307

HSP 2 Score: 126.3 bits (316), Expect = 1.8e-26
Identity = 56/75 (74.67%), Postives = 62/75 (82.67%), Query Frame = 3


Query: 3   EWIWWMDSCIVFYFT*YGT*DSFGKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 62
           EWIWWMDS    +FT       +GKYD YN+V+HGYPDL+FNQKSWIALNTGSFLFRNCQ
Sbjct: 218 EWIWWMDSDA--WFTDMVFEIPYGKYDRYNMVIHGYPDLLFNQKSWIALNTGSFLFRNCQ 277

Query: 63  WSLDLLDAWAPMGPR 122
           WSLDLLD WAPMGP+
Sbjct: 278 WSLDLLDVWAPMGPK 290

Query: 123  182
           
Sbjct: 338  290

Query: 183  228
           
Sbjct: 398  290

[Close]

BLAST of CU142480 vs. NCBI nr
Match: gi|147855862|emb|CAN80739.1| (hypothetical protein VITISV_027037 [Vitis vinifera])

HSP 1 Score: 131.7 bits (330), Expect = 6.2e-28
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 3


Query: 3   EWIWWMDSCIVFYFT*YGT*DSFGKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 62
           EWIWWMDS  +F    +       KYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ
Sbjct: 216 EWIWWMDSDALFTDMVFEI--PLSKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 275

Query: 63  WSLDLLDAWAPMGPR 122
           WSLDLLDAWAPMGP+
Sbjct: 276 WSLDLLDAWAPMGPK 288

Query: 123  182
           
Sbjct: 336  288

Query: 183  228
           
Sbjct: 396  288

[Close]

BLAST of CU142480 vs. NCBI nr
Match: gi|297733940|emb|CBI15187.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 131.7 bits (330), Expect = 6.2e-28
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 3


Query: 3   EWIWWMDSCIVFYFT*YGT*DSFGKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 62
           EWIWWMDS  +F    +       KYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ
Sbjct: 91  EWIWWMDSDALFTDMVFEI--PLSKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 150

Query: 63  WSLDLLDAWAPMGPR 122
           WSLDLLDAWAPMGP+
Sbjct: 151 WSLDLLDAWAPMGPK 163

Query: 123  182
           
Sbjct: 211  163

Query: 183  228
           
Sbjct: 271  163

[Close]

BLAST of CU142480 vs. NCBI nr
Match: gi|225457345|ref|XP_002284667.1| (PREDICTED: putative glycosyltransferase 5 [Vitis vinifera])

HSP 1 Score: 131.7 bits (330), Expect = 6.2e-28
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 3


Query: 3   EWIWWMDSCIVFYFT*YGT*DSFGKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 62
           EWIWWMDS  +F    +       KYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ
Sbjct: 216 EWIWWMDSDALFTDMVFEI--PLSKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 275

Query: 63  WSLDLLDAWAPMGPR 122
           WSLDLLDAWAPMGP+
Sbjct: 276 WSLDLLDAWAPMGPK 288

Query: 123  182
           
Sbjct: 336  288

Query: 183  228
           
Sbjct: 396  288

[Close]

BLAST of CU142480 vs. NCBI nr
Match: gi|449440812|ref|XP_004138178.1| (PREDICTED: putative glycosyltransferase 5 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-27
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 3


Query: 3   EWIWWMDSCIVFYFT*YGT*DSFGKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 62
           EWIWWMDS  +F    +       KYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ
Sbjct: 222 EWIWWMDSDALFTDMVFEI--PLEKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 281

Query: 63  WSLDLLDAWAPMGPR 122
           WSLDLLDAWAPMGP+
Sbjct: 282 WSLDLLDAWAPMGPK 294

Query: 123  182
           
Sbjct: 342  294

Query: 183  228
           
Sbjct: 402  294

[Close]

BLAST of CU142480 vs. NCBI nr
Match: gi|449440814|ref|XP_004138179.1| (PREDICTED: putative glycosyltransferase 5 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-27
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 3


Query: 3   EWIWWMDSCIVFYFT*YGT*DSFGKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 62
           EWIWWMDS  +F    +       KYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ
Sbjct: 222 EWIWWMDSDALFTDMVFEI--PLEKYDNYNLVVHGYPDLMFNQKSWIALNTGSFLFRNCQ 281

Query: 63  WSLDLLDAWAPMGPR 122
           WSLDLLDAWAPMGP+
Sbjct: 282 WSLDLLDAWAPMGPK 294

Query: 123  182
           
Sbjct: 342  294

Query: 183  228
           
Sbjct: 402  294

The following BLAST results are available for this feature:

BLAST of CU142480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
XXT3_ARATH	5.3e-27	70.67	Probable xyloglucan 6-xylosyltransferase 3 OS=Arabidopsis thaliana GN=XXT3 PE=2 ...	[more]
XXT4_ARATH	7.6e-26	68.00	Xyloglucan 6-xylosyltransferase 4 OS=Arabidopsis thaliana GN=XXT4 PE=1 SV=1	[more]
XXT5_ARATH	2.2e-25	68.00	Probable xyloglucan 6-xylosyltransferase 5 OS=Arabidopsis thaliana GN=XXT5 PE=1 ...	[more]
GT3_ORYSI	2.1e-23	62.67	Probable glycosyltransferase 3 OS=Oryza sativa subsp. indica GN=GT3 PE=3 SV=1	[more]
GT3_ORYSJ	2.1e-23	62.67	Probable glycosyltransferase 3 OS=Oryza sativa subsp. japonica GN=GT3 PE=2 SV=1	[more]

BLAST of CU142480 vs. TrEMBL


Match Name	E-value	Identity	Description
A5B3I5_VITVI	2.2e-27	78.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027037 PE=4 SV=1	[more]
A5B3I5_VITVI	4.7e+02	87.50	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027037 PE=4 SV=1	[more]
F6GT58_VITVI	4.7e+02	87.50	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g06590 PE=4 SV=...	[more]
A0A0A0LRQ8_CUCSA	2.1e+02	93.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009930 PE=4 SV=1	[more]
A0A0A0LP65_CUCSA	2.1e+02	93.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G010930 PE=4 SV=1	[more]

BLAST of CU142480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147855862\|emb\|CAN80739.1\|	6.2e-28	78.67	hypothetical protein VITISV_027037 [Vitis vinifera]	[more]
gi\|297733940\|emb\|CBI15187.3\|	6.2e-28	78.67	unnamed protein product [Vitis vinifera]	[more]
gi\|225457345\|ref\|XP_002284667.1\|	6.2e-28	78.67	PREDICTED: putative glycosyltransferase 5 [Vitis vinifera]	[more]
gi\|449440812\|ref\|XP_004138178.1\|	1.1e-27	78.67	PREDICTED: putative glycosyltransferase 5 [Cucumis sativus]	[more]
gi\|449440814\|ref\|XP_004138179.1\|	1.1e-27	78.67	PREDICTED: putative glycosyltransferase 5 [Cucumis sativus]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G010930	Csa1G010930	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0096619	G0096619	EST