CU142229 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU142229
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 17908623 .. 17908772 (+)
Sequence length151
The following sequences are available for this feature:

transcribed_cluster sequence

AGGCCACCACATTTTGAGTACAAATCAATCAAACCACTGCCCACATGACTATTCTGATGGTAACCAGACTTTATCAATTTGGCGTGAAACTGGAGCCCGCCTAATAAGTCCTGTACATTTGTAAACGCTGTCAAAACGCTTGCTAAAGTAA
Library categoryESTs
gynoecious flower library1
BLAST of CU142229 vs. Swiss-Prot
Match: PP274_ARATH (Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.5e-15
Identity = 37/49 (75.51%), Postives = 40/49 (81.63%), Query Frame = -3

Query: 3   TLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGG 62
           TLASVL A T++  L+GG QFH KLIK+G+HQNSHVGSGLID YSKCGG
Sbjct: 242 TLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGG 290

Query: 63  122
           
Sbjct: 302 290

Query: 123 150
           
Sbjct: 362 290

BLAST of CU142229 vs. TrEMBL
Match: A0A0A0L2J0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G508540 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = -3

Query: 3   TLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGG 62
           TLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGG
Sbjct: 242 TLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGG 290

Query: 63  122
           
Sbjct: 302 290

Query: 123 150
           
Sbjct: 362 290

BLAST of CU142229 vs. TrEMBL
Match: A0A061DH62_THECC (Pentatricopeptide repeat (PPR) superfamily protein OS=Theobroma cacao GN=TCM_000856 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.1e-16
Identity = 42/49 (85.71%), Postives = 48/49 (97.96%), Query Frame = -3

Query: 3   TLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGG 62
           TLASVLTAFT+++DLLGGLQFHA LIK+G+HQN+HVGSGLIDLYSKCGG
Sbjct: 242 TLASVLTAFTSLEDLLGGLQFHAMLIKTGFHQNAHVGSGLIDLYSKCGG 290

Query: 63  122
           
Sbjct: 302 290

Query: 123 150
           
Sbjct: 362 290

BLAST of CU142229 vs. TrEMBL
Match: M5WRA0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022107mg PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 6.1e-16
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = -3

Query: 9   TLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKC 68
           TLASVLTAFT V+DLLGGLQFHAKLIK+G+HQNSHVGSGLIDLYSKC
Sbjct: 242 TLASVLTAFTCVEDLLGGLQFHAKLIKTGFHQNSHVGSGLIDLYSKC 288

Query: 69  128
           
Sbjct: 302 288

Query: 129 150
           
Sbjct: 362 288

BLAST of CU142229 vs. TrEMBL
Match: V4SKL2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025015mg PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-15
Identity = 39/49 (79.59%), Postives = 47/49 (95.92%), Query Frame = -3

Query: 3   TLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGG 62
           TLAS+LTAFT+++DL+GGLQFHA LIKSG+HQNSH+GSGLIDLY+KC G
Sbjct: 242 TLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSG 290

Query: 63  122
           
Sbjct: 302 290

Query: 123 150
           
Sbjct: 362 290

BLAST of CU142229 vs. TrEMBL
Match: A0A067GGT4_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g037537mg PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-15
Identity = 39/49 (79.59%), Postives = 47/49 (95.92%), Query Frame = -3

Query: 3   TLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGG 62
           TLAS+LTAFT+++DL+GGLQFHA LIKSG+HQNSH+GSGLIDLY+KC G
Sbjct: 233 TLASILTAFTSLEDLVGGLQFHAHLIKSGFHQNSHIGSGLIDLYAKCSG 281

Query: 63  122
           
Sbjct: 293 281

Query: 123 150
           
Sbjct: 353 281

BLAST of CU142229 vs. NCBI nr
Match: gi|449457327|ref|XP_004146400.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = -3

Query: 3   TLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGG 62
           TLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGG
Sbjct: 242 TLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGG 290

Query: 63  122
           
Sbjct: 302 290

Query: 123 150
           
Sbjct: 362 290

BLAST of CU142229 vs. NCBI nr
Match: gi|659082889|ref|XP_008442084.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-18
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = -3

Query: 3   TLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGG 62
           TLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQN HVGSGLIDLYSKCGG
Sbjct: 242 TLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNCHVGSGLIDLYSKCGG 290

Query: 63  122
           
Sbjct: 302 290

Query: 123 150
           
Sbjct: 362 290

BLAST of CU142229 vs. NCBI nr
Match: gi|694369060|ref|XP_009362618.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Pyrus x bretschneideri])

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-16
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = -3

Query: 3   TLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGG 62
           TLASVLTAFT V+DLLGGLQFHAKLIK+G+HQNSHVGSGLIDLYSKC G
Sbjct: 242 TLASVLTAFTCVEDLLGGLQFHAKLIKTGFHQNSHVGSGLIDLYSKCAG 290

Query: 63  122
           
Sbjct: 302 290

Query: 123 150
           
Sbjct: 362 290

BLAST of CU142229 vs. NCBI nr
Match: gi|1009155694|ref|XP_015895848.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g49710-like [Ziziphus jujuba])

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-16
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = -3

Query: 3   TLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGG 62
           TLASVLTAFT V+DLLGGLQFHAKLIK+G+HQNSHVGSGLIDLYSKC G
Sbjct: 242 TLASVLTAFTCVEDLLGGLQFHAKLIKTGFHQNSHVGSGLIDLYSKCAG 290

Query: 63  122
           
Sbjct: 302 290

Query: 123 150
           
Sbjct: 362 290

BLAST of CU142229 vs. NCBI nr
Match: gi|470103730|ref|XP_004288283.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Fragaria vesca subsp. vesca])

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-16
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = -3

Query: 3   TLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGG 62
           TLASVLTAFT V+DLLGGLQFHAKLIK+G+HQNSHVGSGLIDLYSKC G
Sbjct: 242 TLASVLTAFTCVEDLLGGLQFHAKLIKTGFHQNSHVGSGLIDLYSKCAG 290

Query: 63  122
           
Sbjct: 302 290

Query: 123 150
           
Sbjct: 362 290

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PP274_ARATH2.5e-1575.51Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN... [more]
Match NameE-valueIdentityDescription
A0A0A0L2J0_CUCSA1.6e-19100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G508540 PE=4 SV=1[more]
A0A061DH62_THECC2.1e-1685.71Pentatricopeptide repeat (PPR) superfamily protein OS=Theobroma cacao GN=TCM_000... [more]
M5WRA0_PRUPE6.1e-1691.49Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022107mg PE=4 SV=1[more]
V4SKL2_9ROSI1.8e-1579.59Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025015mg PE=4 SV=1[more]
A0A067GGT4_CITSI1.8e-1579.59Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g037537mg PE=4 S... [more]
Match NameE-valueIdentityDescription
gi|449457327|ref|XP_004146400.1|2.9e-19100.00PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Cucumis sativu... [more]
gi|659082889|ref|XP_008442084.1|1.1e-1897.96PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Cucumis melo][more]
gi|694369060|ref|XP_009362618.1|2.3e-1689.80PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Pyrus x bretsc... [more]
gi|1009155694|ref|XP_015895848.1|2.3e-1689.80PREDICTED: pentatricopeptide repeat-containing protein At3g49710-like [Ziziphus ... [more]
gi|470103730|ref|XP_004288283.1|2.3e-1689.80PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Fragaria vesca... [more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G508540Csa4G508540gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0094080G0094080EST


Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 2..51
score: 9.1
NoneNo IPR availablePANTHERPTHR24015:SF720SUBFAMILY NOT NAMEDcoord: 2..51
score: 9.1