CU142058 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU142058
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 4559146 .. 4560237 (+)
Sequence length272
The following sequences are available for this feature:

transcribed_cluster sequence

CATTTCTATCTTCTCTTGCCTCCTGAAAATCTGCCACGTTCCAAGGCCAAACGTGAGAGCACCAGGTAGAAACAGTAGCCATTTCGACAATCTCGACTCTCTTTGTTTCTGTTGAGGTTGCGAAAGGGAAGATGAGTTGGGATCAGGAGTAGAACGAAACTACCGCGGCAGAACTGAAGGAAGAAGAAGATGAAGGTAAAGGCGTCGAAGAATGGCCAGAAAAGGGAAAAACAAGGGCGAAAATTTTTGTGATGGATTTAGCTAAGGAAGAA
Library categoryESTs
gynoecious flower library1
BLAST of CU142058 vs. Swiss-Prot
Match: SURF1_ARATH (Surfeit locus protein 1 OS=Arabidopsis thaliana GN=SURF1 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-08
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = -3

Query: 4   SSSLSQPQQKQRESRLSKWLLFLPGALTFGLGTWQIFRRQEKIE 63
           SSS + PQ+ +R S+ S+ LLFLPGA+TFGLG+WQI RR+EK +
Sbjct: 58  SSSSAPPQENKRGSKWSQLLLFLPGAITFGLGSWQIVRREEKFK 101

Query: 64  123
           
Sbjct: 118 101

Query: 124 136
           
Sbjct: 178 101

BLAST of CU142058 vs. TrEMBL
Match: A0A0A0LVW3_CUCSA (SURF1-like protein OS=Cucumis sativus GN=Csa_1G042880 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = -3

Query: 1   STPDPNSSSLSQPQQKQRESRLSKWLLFLPGALTFGLGTWQIFRRQEKIEM 60
           STPDPNSSSLSQPQQKQRESRLSKWLLFLPGALTFGLGTWQIFRRQEKIEM
Sbjct: 42  STPDPNSSSLSQPQQKQRESRLSKWLLFLPGALTFGLGTWQIFRRQEKIEM 92

Query: 61  120
           
Sbjct: 102 92

Query: 121 154
           
Sbjct: 162 92

BLAST of CU142058 vs. TrEMBL
Match: B9I2C9_POPTR (SURF1-like protein OS=Populus trichocarpa GN=POPTR_0012s04250g PE=3 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-09
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = -3

Query: 1   SQPQQKQRESRLSKWLLFLPGALTFGLGTWQIFRRQEKIEM 60
           +QP +K+  SRLSKWLLFLPGA+TFGLGTWQ+ RRQ+KI+M
Sbjct: 52  AQPPEKESGSRLSKWLLFLPGAITFGLGTWQVLRRQDKIKM 92

Query: 61  120
           
Sbjct: 112 92

Query: 121 124
           
Sbjct: 172 92

BLAST of CU142058 vs. TrEMBL
Match: M5WUQ5_PRUPE (SURF1-like protein OS=Prunus persica GN=PRUPE_ppa007867mg PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-09
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = -3

Query: 1   STPDPNSSSLSQPQQKQRESRLSKWLLFLPGALTFGLGTWQIFRRQEKIEM 60
           S P+  S+  SQ  +++R SR SKWLLFLPGA++FGLGTWQIFRRQEKI+M
Sbjct: 50  SVPESQSTLSSQATERER-SRWSKWLLFLPGAVSFGLGTWQIFRRQEKIKM 99

Query: 61  120
           
Sbjct: 110 99

Query: 121 154
           
Sbjct: 170 99

BLAST of CU142058 vs. TrEMBL
Match: A0A068TSK1_COFCA (SURF1-like protein OS=Coffea canephora GN=GSCOC_T00022390001 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.6e-09
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = -3

Query: 1   STPDPN-SSSLSQPQQKQRESRLSKWLLFLPGALTFGLGTWQIFRRQEKIEM 60
           ST  P+ SS  + P +++R S LSK LLF+PGA+TFGLGTWQIFRRQEKI+M
Sbjct: 41  STSAPSISSPTTPPPEQERRSALSKLLLFIPGAITFGLGTWQIFRRQEKIKM 92

Query: 61  120
           
Sbjct: 101 92

Query: 121 154
           
Sbjct: 161 92

BLAST of CU142058 vs. TrEMBL
Match: B9SXS0_RICCO (SURF1-like protein OS=Ricinus communis GN=RCOM_0569510 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.8e-09
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = -3

Query: 1   STPDPNSSSLSQPQQKQRESRLSKWLLFLPGALTFGLGTWQIFRRQEKIEM 60
           ST  P S  +   ++K+R S+ SKWLLFLPG +TFGLGTWQIFRRQEKI+M
Sbjct: 50  STFTPQSQGV-HVREKERISKWSKWLLFLPGTITFGLGTWQIFRRQEKIKM 99

Query: 61  120
           
Sbjct: 110 99

Query: 121 154
           
Sbjct: 170 99

BLAST of CU142058 vs. NCBI nr
Match: gi|449439471|ref|XP_004137509.1| (PREDICTED: surfeit locus protein 1 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = -3

Query: 1   STPDPNSSSLSQPQQKQRESRLSKWLLFLPGALTFGLGTWQIFRRQEKIEM 60
           STPDPNSSSLSQPQQKQRESRLSKWLLFLPGALTFGLGTWQIFRRQEKIEM
Sbjct: 42  STPDPNSSSLSQPQQKQRESRLSKWLLFLPGALTFGLGTWQIFRRQEKIEM 92

Query: 61  120
           
Sbjct: 102 92

Query: 121 154
           
Sbjct: 162 92

BLAST of CU142058 vs. NCBI nr
Match: gi|659066886|ref|XP_008465733.1| (PREDICTED: surfeit locus protein 1 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = -3

Query: 1   STPDPNSSSLSQPQQKQRESRLSKWLLFLPGALTFGLGTWQIFRRQEKIEM 60
           STPDPNSSSLSQPQQKQRESRLSKWLLFLPGALTFGLGTWQIFRRQEKIEM
Sbjct: 42  STPDPNSSSLSQPQQKQRESRLSKWLLFLPGALTFGLGTWQIFRRQEKIEM 92

Query: 61  120
           
Sbjct: 102 92

Query: 121 154
           
Sbjct: 162 92

BLAST of CU142058 vs. NCBI nr
Match: gi|743890860|ref|XP_011039174.1| (PREDICTED: surfeit locus protein 1 [Populus euphratica])

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-09
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = -3

Query: 1   SQPQQKQRESRLSKWLLFLPGALTFGLGTWQIFRRQEKIEM 60
           +QP +K+  SRLSKWLLFLPGA+TFGLGTWQ+ RRQ+KI+M
Sbjct: 51  TQPPEKESGSRLSKWLLFLPGAITFGLGTWQVLRRQDKIKM 91

Query: 61  120
           
Sbjct: 111 91

Query: 121 124
           
Sbjct: 171 91

BLAST of CU142058 vs. NCBI nr
Match: gi|566196743|ref|XP_002317864.2| (hypothetical protein POPTR_0012s04250g [Populus trichocarpa])

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-09
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = -3

Query: 1   SQPQQKQRESRLSKWLLFLPGALTFGLGTWQIFRRQEKIEM 60
           +QP +K+  SRLSKWLLFLPGA+TFGLGTWQ+ RRQ+KI+M
Sbjct: 52  AQPPEKESGSRLSKWLLFLPGAITFGLGTWQVLRRQDKIKM 92

Query: 61  120
           
Sbjct: 112 92

Query: 121 124
           
Sbjct: 172 92

BLAST of CU142058 vs. NCBI nr
Match: gi|645269731|ref|XP_008240132.1| (PREDICTED: surfeit locus protein 1 [Prunus mume])

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-09
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = -3

Query: 1   STPDPNSSSLSQPQQKQRESRLSKWLLFLPGALTFGLGTWQIFRRQEKIEM 60
           S P+  S+  SQ  +++R SR SKWLLFLPGA++FGLGTWQIFRRQEKI+M
Sbjct: 50  SVPESQSTLSSQAPERER-SRWSKWLLFLPGAVSFGLGTWQIFRRQEKIKM 99

Query: 61  120
           
Sbjct: 110 99

Query: 121 154
           
Sbjct: 170 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SURF1_ARATH2.5e-0861.36Surfeit locus protein 1 OS=Arabidopsis thaliana GN=SURF1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LVW3_CUCSA1.2e-20100.00SURF1-like protein OS=Cucumis sativus GN=Csa_1G042880 PE=3 SV=1[more]
B9I2C9_POPTR1.2e-0973.17SURF1-like protein OS=Populus trichocarpa GN=POPTR_0012s04250g PE=3 SV=2[more]
M5WUQ5_PRUPE1.2e-0966.67SURF1-like protein OS=Prunus persica GN=PRUPE_ppa007867mg PE=3 SV=1[more]
A0A068TSK1_COFCA4.6e-0965.38SURF1-like protein OS=Coffea canephora GN=GSCOC_T00022390001 PE=3 SV=1[more]
B9SXS0_RICCO7.8e-0964.71SURF1-like protein OS=Ricinus communis GN=RCOM_0569510 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
gi|449439471|ref|XP_004137509.1|1.7e-20100.00PREDICTED: surfeit locus protein 1 [Cucumis sativus][more]
gi|659066886|ref|XP_008465733.1|1.7e-20100.00PREDICTED: surfeit locus protein 1 [Cucumis melo][more]
gi|743890860|ref|XP_011039174.1|1.0e-0973.17PREDICTED: surfeit locus protein 1 [Populus euphratica][more]
gi|566196743|ref|XP_002317864.2|1.0e-0973.17hypothetical protein POPTR_0012s04250g [Populus trichocarpa][more]
gi|645269731|ref|XP_008240132.1|1.7e-0966.67PREDICTED: surfeit locus protein 1 [Prunus mume][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G042880Csa1G042880gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0092157G0092157EST