CU141877 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU141877
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Aquaporin
Location	Chr3 : 18055007 .. 18055239 (+)
Sequence length	234

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CCGATTTCGGGAGCTTCTATGAATCCAGCTAGGAGCCTTGGACCAGCAATAGTGAAACGGCAGTTTAAAGGATTATGGGTTTACATGTTAGGACCCTTGATCGGAGCGGTCACCGGCGGTTTTGTCTATAACCTCATGAGATACACAGACAAGTCGTTACGGGAGATCACCAGAAGCACCTCATTCCTCACCGGCACCCACAAATCATAACCCGCCCGCCCGATAATTTAAAAA

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU141877 vs. Swiss-Prot
Match: NIP42_ARATH (Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2)

HSP 1 Score: 101.3 bits (251), Expect = 4.9e-21
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 1


Query: 1   PISGASMNPARSLGPAIVKRQFKGLWVYMLGPLIGAVTGGFVYNLMRYTDKSLREITRST 60
           PISGASMNPARSLGPAIV  ++KG+WVY++GP +G   GGFVYN MR+TDK LRE+T+S 
Sbjct: 207 PISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIFAGGFVYNFMRFTDKPLRELTKSA 266

Query: 61  SFL 120
           SFL
Sbjct: 267 SFL 269

Query: 121  180
           
Sbjct: 327  269

Query: 181  190
           
Sbjct: 387  269

[Close]

BLAST of CU141877 vs. Swiss-Prot
Match: NIP41_ARATH (Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.5e-20
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 1   PISGASMNPARSLGPAIVKRQFKGLWVYMLGPLIGAVTGGFVYNLMRYTDKSLREITRST 60
           PISGASMNPARSLGPA+V   +K +WVY++GP++G ++GGFVYNL+R+TDK LRE+T+S 
Sbjct: 207 PISGASMNPARSLGPALVMGVYKHIWVYIVGPVLGVISGGFVYNLIRFTDKPLRELTKSA 266

Query: 61  SFLTGTHKS 120
           SFL     S
Sbjct: 267 SFLRAVSPS 275

Query: 121  180
           
Sbjct: 327  275

Query: 181  208
           
Sbjct: 387  275

[Close]

BLAST of CU141877 vs. Swiss-Prot
Match: NIP11_MAIZE (Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-19
Identity = 41/68 (60.29%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 1   PISGASMNPARSLGPAIVKRQFKGLWVYMLGPLIGAVTGGFVYNLMRYTDKSLREITRST 60
           P+SGASMNPARS+GPA+V  ++  +WVY++GP++GAV G + YNL+R+T+K LREIT+ST
Sbjct: 208 PVSGASMNPARSVGPALVSGEYTSIWVYVVGPVVGAVAGAWAYNLIRFTNKPLREITKST 267

Query: 61  SFLTGTHK 120
           SFL  T +
Sbjct: 268 SFLKSTSR 275

Query: 121  180
           
Sbjct: 328  275

Query: 181  205
           
Sbjct: 388  275

[Close]

BLAST of CU141877 vs. Swiss-Prot
Match: NIP12_ARATH (Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=2 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 3.5e-19
Identity = 41/63 (65.08%), Postives = 53/63 (84.13%), Query Frame = 1


Query: 1   PISGASMNPARSLGPAIVKRQFKGLWVYMLGPLIGAVTGGFVYNLMRYTDKSLREITRST 60
           P+SGASMNP RSLGPA+V   ++GLW+Y++ P++GAV+G +VYN++RYTDK LREIT+S 
Sbjct: 223 PVSGASMNPGRSLGPAMVYSCYRGLWIYIVSPIVGAVSGAWVYNMVRYTDKPLREITKSG 282

Query: 61  SFL 120
           SFL
Sbjct: 283 SFL 285

Query: 121  180
           
Sbjct: 343  285

Query: 181  190
           
Sbjct: 403  285

[Close]

BLAST of CU141877 vs. Swiss-Prot
Match: NO26_SOYBN (Nodulin-26 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 4.6e-19
Identity = 39/65 (60.00%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 1   PISGASMNPARSLGPAIVKRQFKGLWVYMLGPLIGAVTGGFVYNLMRYTDKSLREITRST 60
           P++GASMNPARSLGPA V  +++G+W+Y+L P++GA+ G +VYN++RYTDK L E T+S 
Sbjct: 202 PVTGASMNPARSLGPAFVHGEYEGIWIYLLAPVVGAIAGAWVYNIVRYTDKPLSETTKSA 261

Query: 61  SFLTG 120
           SFL G
Sbjct: 262 SFLKG 266

Query: 121  180
           
Sbjct: 322  266

Query: 181  196
           
Sbjct: 382  266

[Close]

BLAST of CU141877 vs. TrEMBL
Match: A0A0A0LA39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345890 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.4e-30
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   PISGASMNPARSLGPAIVKRQFKGLWVYMLGPLIGAVTGGFVYNLMRYTDKSLREITRST 60
           PISGASMNPARSLGPAIVKRQFKGLWVYMLGPLIGAV GGFVYNLMRYTDKSLREITRST
Sbjct: 201 PISGASMNPARSLGPAIVKRQFKGLWVYMLGPLIGAVAGGFVYNLMRYTDKSLREITRST 260

Query: 61  SFLTGTHKS 120
           SFLTGTHKS
Sbjct: 261 SFLTGTHKS 269

Query: 121  180
           
Sbjct: 321  269

Query: 181  208
           
Sbjct: 381  269

[Close]

BLAST of CU141877 vs. TrEMBL
Match: B9H2D3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s06160g PE=3 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 2.9e-20
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 1


Query: 1   PISGASMNPARSLGPAIVKRQFKGLWVYMLGPLIGAVTGGFVYNLMRYTDKSLREITRST 60
           PISGASMNPARSLGPAIV  Q+KGLW+Y++ P++GA  G +VYNL+RYTDK LREIT+S 
Sbjct: 208 PISGASMNPARSLGPAIVSHQYKGLWIYIVSPILGAQAGAWVYNLIRYTDKPLREITKSA 267

Query: 61  SFLTGTHKS 120
           SFL G   S
Sbjct: 268 SFLNGKESS 276

Query: 121  180
           
Sbjct: 328  276

Query: 181  208
           
Sbjct: 388  276

[Close]

BLAST of CU141877 vs. TrEMBL
Match: E5GC22_CUCME (Aquaporin OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.8e-20
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 1   PISGASMNPARSLGPAIVKRQFKGLWVYMLGPLIGAVTGGFVYNLMRYTDKSLREITRST 60
           PI+GASMNPARSLGPAIV RQFKGLW+Y++ P+ GA+TG  VYN +R+TDK LREIT+S 
Sbjct: 205 PITGASMNPARSLGPAIVSRQFKGLWIYIVAPIFGAITGALVYNTIRFTDKPLREITKSA 264

Query: 61  SFLTG 120
           SFL G
Sbjct: 265 SFLKG 269

Query: 121  180
           
Sbjct: 325  269

Query: 181  196
           
Sbjct: 385  269

[Close]

BLAST of CU141877 vs. TrEMBL
Match: A0A0A0KNN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G520340 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.8e-20
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 1   PISGASMNPARSLGPAIVKRQFKGLWVYMLGPLIGAVTGGFVYNLMRYTDKSLREITRST 60
           PI+GASMNPARSLGPAIV RQFKGLW+Y++ P+ GA+TG  VYN +R+TDK LREIT+S 
Sbjct: 205 PITGASMNPARSLGPAIVSRQFKGLWIYIVAPIFGAITGALVYNTIRFTDKPLREITKSA 264

Query: 61  SFLTG 120
           SFL G
Sbjct: 265 SFLKG 269

Query: 121  180
           
Sbjct: 325  269

Query: 181  196
           
Sbjct: 385  269

[Close]

BLAST of CU141877 vs. TrEMBL
Match: A0A0D2PTX4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G161900 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.5e-20
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 1


Query: 1   PISGASMNPARSLGPAIVKRQFKGLWVYMLGPLIGAVTGGFVYNLMRYTDKSLREITRST 60
           PISGASMNPAR+LGPAIV R + G+WVYM+GP++G V+GGFVYNL+R+TDK L E+TRS+
Sbjct: 195 PISGASMNPARTLGPAIVMRVYDGIWVYMVGPMLGTVSGGFVYNLIRFTDKPLSELTRSS 254

Query: 61  SFLTGTHKS 120
           SF+    KS
Sbjct: 255 SFVKSMSKS 263

Query: 121  180
           
Sbjct: 315  263

Query: 181  208
           
Sbjct: 375  263

[Close]

BLAST of CU141877 vs. NCBI nr
Match: gi|449464154|ref|XP_004149794.1| (PREDICTED: probable aquaporin NIP-type [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-30
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   PISGASMNPARSLGPAIVKRQFKGLWVYMLGPLIGAVTGGFVYNLMRYTDKSLREITRST 60
           PISGASMNPARSLGPAIVKRQFKGLWVYMLGPLIGAV GGFVYNLMRYTDKSLREITRST
Sbjct: 201 PISGASMNPARSLGPAIVKRQFKGLWVYMLGPLIGAVAGGFVYNLMRYTDKSLREITRST 260

Query: 61  SFLTGTHKS 120
           SFLTGTHKS
Sbjct: 261 SFLTGTHKS 269

Query: 121  180
           
Sbjct: 321  269

Query: 181  208
           
Sbjct: 381  269

[Close]

BLAST of CU141877 vs. NCBI nr
Match: gi|659114474|ref|XP_008457069.1| (PREDICTED: probable aquaporin NIP-type [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 6.0e-27
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1   PISGASMNPARSLGPAIVKRQFKGLWVYMLGPLIGAVTGGFVYNLMRYTDKSLREITRST 60
           PISGASMNPAR++GPAIVKRQFKGLWVY++GP IGAV GGFVYNLMRYTDK LREITRST
Sbjct: 201 PISGASMNPARTIGPAIVKRQFKGLWVYIVGPFIGAVAGGFVYNLMRYTDKPLREITRST 260

Query: 61  SFLTGTHKS 120
           SFLTGT KS
Sbjct: 261 SFLTGTLKS 269

Query: 121  180
           
Sbjct: 321  269

Query: 181  208
           
Sbjct: 381  269

[Close]

BLAST of CU141877 vs. NCBI nr
Match: gi|743930783|ref|XP_011009650.1| (PREDICTED: aquaporin NIP1-2-like [Populus euphratica])

HSP 1 Score: 108.6 bits (270), Expect = 5.0e-21
Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 1


Query: 1   PISGASMNPARSLGPAIVKRQFKGLWVYMLGPLIGAVTGGFVYNLMRYTDKSLREITRST 60
           PISGASMNPARSLGPAIV  Q+KGLW+Y++ P++GA  G +VYNLMRYTDK LREIT+S 
Sbjct: 208 PISGASMNPARSLGPAIVSHQYKGLWIYIVSPILGAQAGAWVYNLMRYTDKPLREITKSA 267

Query: 61  SFLTGTHKS 120
           SFL G  +S
Sbjct: 268 SFLNGKERS 276

Query: 121  180
           
Sbjct: 328  276

Query: 181  208
           
Sbjct: 388  276

[Close]

BLAST of CU141877 vs. NCBI nr
Match: gi|566165196|ref|XP_002305717.2| (hypothetical protein POPTR_0004s06160g [Populus trichocarpa])

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-20
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 1


Query: 1   PISGASMNPARSLGPAIVKRQFKGLWVYMLGPLIGAVTGGFVYNLMRYTDKSLREITRST 60
           PISGASMNPARSLGPAIV  Q+KGLW+Y++ P++GA  G +VYNL+RYTDK LREIT+S 
Sbjct: 208 PISGASMNPARSLGPAIVSHQYKGLWIYIVSPILGAQAGAWVYNLIRYTDKPLREITKSA 267

Query: 61  SFLTGTHKS 120
           SFL G   S
Sbjct: 268 SFLNGKESS 276

Query: 121  180
           
Sbjct: 328  276

Query: 181  208
           
Sbjct: 388  276

[Close]

BLAST of CU141877 vs. NCBI nr
Match: gi|659078399|ref|XP_008439707.1| (PREDICTED: aquaporin NIP1-1 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 3.2e-20
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 1   PISGASMNPARSLGPAIVKRQFKGLWVYMLGPLIGAVTGGFVYNLMRYTDKSLREITRST 60
           PI+GASMNPARSLGPAIV RQFKGLW+Y++ P+ GA+TG  VYN +R+TDK LREIT+S 
Sbjct: 205 PITGASMNPARSLGPAIVSRQFKGLWIYIVAPIFGAITGALVYNTIRFTDKPLREITKSA 264

Query: 61  SFLTG 120
           SFL G
Sbjct: 265 SFLKG 269

Query: 121  180
           
Sbjct: 325  269

Query: 181  196
           
Sbjct: 385  269

The following BLAST results are available for this feature:

BLAST of CU141877 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NIP42_ARATH	4.9e-21	71.43	Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2	[more]
NIP41_ARATH	2.5e-20	63.77	Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=3 SV=1	[more]
NIP11_MAIZE	1.6e-19	60.29	Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1	[more]
NIP12_ARATH	3.5e-19	65.08	Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=2 SV=2	[more]
NO26_SOYBN	4.6e-19	60.00	Nodulin-26 OS=Glycine max PE=1 SV=2	[more]

BLAST of CU141877 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA39_CUCSA	1.4e-30	98.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345890 PE=3 SV=1	[more]
B9H2D3_POPTR	2.9e-20	69.57	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s06160g PE=3 SV=2	[more]
E5GC22_CUCME	3.8e-20	72.31	Aquaporin OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0A0KNN7_CUCSA	3.8e-20	72.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G520340 PE=3 SV=1	[more]
A0A0D2PTX4_GOSRA	6.5e-20	68.12	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G161900 PE=3 SV=1	[more]

BLAST of CU141877 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464154\|ref\|XP_004149794.1\|	1.2e-30	98.55	PREDICTED: probable aquaporin NIP-type [Cucumis sativus]	[more]
gi\|659114474\|ref\|XP_008457069.1\|	6.0e-27	88.41	PREDICTED: probable aquaporin NIP-type [Cucumis melo]	[more]
gi\|743930783\|ref\|XP_011009650.1\|	5.0e-21	71.01	PREDICTED: aquaporin NIP1-2-like [Populus euphratica]	[more]
gi\|566165196\|ref\|XP_002305717.2\|	2.5e-20	69.57	hypothetical protein POPTR_0004s06160g [Populus trichocarpa]	[more]
gi\|659078399\|ref\|XP_008439707.1\|	3.2e-20	72.31	PREDICTED: aquaporin NIP1-1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR000425	MIP
IPR023271	Aquaporin-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005215	transporter activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G345890	Csa3G345890	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0090228	G0090228	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000425	Major intrinsic protein	PANTHER	PTHR19139	AQUAPORIN TRANSPORTER	coord: 1..63 score: 3.6
IPR000425	Major intrinsic protein	PFAM	PF00230	MIP	coord: 1..43 score: 2.4
IPR023271	Aquaporin-like	GENE3D	G3DSA:1.20.1080.10		coord: 1..52 score: 2.1
IPR023271	Aquaporin-like	unknown	SSF81338	Aquaporin-like	coord: 1..56 score: 6.67
None	No IPR available	PANTHER	PTHR19139:SF181	AQUAPORIN NIP4-1-RELATED	coord: 1..63 score: 3.6