CU141744 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU141744
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Cell division cycle 5-like protein
Location	Chr1 : 27508109 .. 27508332 (-)
Sequence length	223

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGGAAAGAAGGCAAAAAGGAAAGCCCGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCTCTGCAAAAAAGAAGAGAGCTAAAAGCTGCAGGAATTGATACTCGACAAAGGAAGAGAAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAAGCCTCCTCAGGATTTTTTGACGTTAGTGAGGAAGACAGACCAGTGGAACAGCCC

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU141744 vs. Swiss-Prot
Match: CDC5L_ARATH (Cell division cycle 5-like protein OS=Arabidopsis thaliana GN=CDC5 PE=1 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 2.6e-19
Identity = 50/73 (68.49%), Postives = 55/73 (75.34%), Query Frame = 2


Query: 2   GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKEKRNRLQC*NSF*EKASSG 61
           GKKAKRKAREKQLEEARRLASLQKRRELKAAGID R RKRK K         F ++A +G
Sbjct: 163 GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDGRHRKRKRKGIDYNAEIPFEKRAPAG 222

Query: 62  FFDVSEEDRPVEQ 121
           F+D ++EDRP +Q
Sbjct: 223 FYDTADEDRPADQ 235

Query: 122  181
           
Sbjct: 283  235

Query: 182  221
           
Sbjct: 343  235

[Close]

BLAST of CU141744 vs. Swiss-Prot
Match: CDC5L_NEMVE (Cell division cycle 5-related protein OS=Nematostella vectensis GN=cdc5l PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-16
Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 2


Query: 2   GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKEKRNRLQC*NSF*EKASSG 61
           GKKAKRKAREKQLEEARRLA+LQKRREL+AAGID R+ ++K++         F +K +SG
Sbjct: 164 GKKAKRKAREKQLEEARRLAALQKRRELRAAGIDIRKHRKKKRGVDYNAEIPFEKKPASG 223

Query: 62  FFDVSEEDRPVEQP 121
           F+D S+E+ P  QP
Sbjct: 224 FYDTSDENLPDYQP 237

Query: 122  181
           
Sbjct: 284  237

Query: 182  224
           
Sbjct: 344  237

[Close]

BLAST of CU141744 vs. Swiss-Prot
Match: CDC5L_BOVIN (Cell division cycle 5-like protein OS=Bos taurus GN=CDC5L PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.3e-14
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 2


Query: 2   GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKEKRNRLQC*NSF*EKASSG 61
           GKKAKRKAREKQLEEARRLA+LQKRREL+AAGI+ +++++K++         F +K + G
Sbjct: 164 GKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKKKRGVDYNAEIPFEKKPALG 223

Query: 62  FFDVSEED 121
           F+D SEE+
Sbjct: 224 FYDTSEEN 231

Query: 122  181
           
Sbjct: 284  231

Query: 182  206
           
Sbjct: 344  231

[Close]

BLAST of CU141744 vs. Swiss-Prot
Match: CDC5L_MOUSE (Cell division cycle 5-like protein OS=Mus musculus GN=Cdc5l PE=1 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 3.3e-14
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 2


Query: 2   GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKEKRNRLQC*NSF*EKASSG 61
           GKKAKRKAREKQLEEARRLA+LQKRREL+AAGI+ +++++K++         F +K + G
Sbjct: 164 GKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKKKRGVDYNAEIPFEKKPALG 223

Query: 62  FFDVSEED 121
           F+D SEE+
Sbjct: 224 FYDTSEEN 231

Query: 122  181
           
Sbjct: 284  231

Query: 182  206
           
Sbjct: 344  231

[Close]

BLAST of CU141744 vs. Swiss-Prot
Match: CDC5L_RAT (Cell division cycle 5-like protein OS=Rattus norvegicus GN=Cdc5l PE=1 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 3.3e-14
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 2


Query: 2   GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKEKRNRLQC*NSF*EKASSG 61
           GKKAKRKAREKQLEEARRLA+LQKRREL+AAGI+ +++++K++         F +K + G
Sbjct: 164 GKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKKKRGVDYNAEIPFEKKPALG 223

Query: 62  FFDVSEED 121
           F+D SEE+
Sbjct: 224 FYDTSEEN 231

Query: 122  181
           
Sbjct: 284  231

Query: 182  206
           
Sbjct: 344  231

[Close]

BLAST of CU141744 vs. TrEMBL
Match: A0A0A0M0E8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G682630 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.5e-21
Identity = 59/74 (79.73%), Postives = 60/74 (81.08%), Query Frame = 2


Query: 2   GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKEKRNRLQC*NSF*EKASSG 61
           GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRK K         F +K   G
Sbjct: 163 GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKKPPPG 222

Query: 62  FFDVSEEDRPVEQP 121
           FFDVSEEDRPVEQP
Sbjct: 223 FFDVSEEDRPVEQP 236

Query: 122  181
           
Sbjct: 283  236

Query: 182  224
           
Sbjct: 343  236

[Close]

BLAST of CU141744 vs. TrEMBL
Match: A0A0A0K6R7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431360 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 7.3e-21
Identity = 58/74 (78.38%), Postives = 59/74 (79.73%), Query Frame = 2


Query: 2   GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKEKRNRLQC*NSF*EKASSG 61
           GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRK K         F +K   G
Sbjct: 163 GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKKPPPG 222

Query: 62  FFDVSEEDRPVEQP 121
           FFDV EEDRPVEQP
Sbjct: 223 FFDVGEEDRPVEQP 236

Query: 122  181
           
Sbjct: 283  236

Query: 182  224
           
Sbjct: 343  236

[Close]

BLAST of CU141744 vs. TrEMBL
Match: A0A0K9RDE1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_079390 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-20
Identity = 56/74 (75.68%), Postives = 61/74 (82.43%), Query Frame = 2


Query: 2   GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKEKRNRLQC*NSF*EKASSG 61
           GKKAKRKAREKQLEEARRLASLQKRRELKAAGID RQRKRK K         F ++A +G
Sbjct: 163 GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDPRQRKRKRKGIDYNAEIPFEKRAPAG 222

Query: 62  FFDVSEEDRPVEQP 121
           F+DV+EEDRPVEQP
Sbjct: 223 FYDVAEEDRPVEQP 236

Query: 122  181
           
Sbjct: 283  236

Query: 182  224
           
Sbjct: 343  236

[Close]

BLAST of CU141744 vs. TrEMBL
Match: M5WK14_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000753mg PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-20
Identity = 56/74 (75.68%), Postives = 60/74 (81.08%), Query Frame = 2


Query: 2   GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKEKRNRLQC*NSF*EKASSG 61
           GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRK K         F +K   G
Sbjct: 163 GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKKPPPG 222

Query: 62  FFDVSEEDRPVEQP 121
           F+DV++EDRPVEQP
Sbjct: 223 FYDVADEDRPVEQP 236

Query: 122  181
           
Sbjct: 283  236

Query: 182  224
           
Sbjct: 343  236

[Close]

BLAST of CU141744 vs. TrEMBL
Match: A0A0J8CQ19_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g079310 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-20
Identity = 56/74 (75.68%), Postives = 60/74 (81.08%), Query Frame = 2


Query: 2   GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKEKRNRLQC*NSF*EKASSG 61
           GKKAKRKAREKQLEEARRLASLQKRRELKAAGID RQRKRK K         F ++  SG
Sbjct: 163 GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDVRQRKRKRKGIDYNAEIPFEKRPPSG 222

Query: 62  FFDVSEEDRPVEQP 121
           F+DV+EEDRPVEQP
Sbjct: 223 FYDVAEEDRPVEQP 236

Query: 122  181
           
Sbjct: 283  236

Query: 182  224
           
Sbjct: 343  236

[Close]

BLAST of CU141744 vs. NCBI nr
Match: gi|778665422|ref|XP_011648556.1| (PREDICTED: LOW QUALITY PROTEIN: cell division cycle 5-like protein [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-17
Identity = 59/74 (79.73%), Postives = 60/74 (81.08%), Query Frame = 2


Query: 2   GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKEKRNRLQC*NSF*EKASSG 61
           GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRK K         F +K   G
Sbjct: 163 GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKKPPPG 222

Query: 62  FFDVSEEDRPVEQP 121
           FFDVSEEDRPVEQP
Sbjct: 223 FFDVSEEDRPVEQP 236

Query: 122  181
           
Sbjct: 283  236

Query: 182  224
           
Sbjct: 343  236

[Close]

BLAST of CU141744 vs. NCBI nr
Match: gi|700211673|gb|KGN66769.1| (hypothetical protein Csa_1G682630 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-17
Identity = 59/74 (79.73%), Postives = 60/74 (81.08%), Query Frame = 2


Query: 2   GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKEKRNRLQC*NSF*EKASSG 61
           GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRK K         F +K   G
Sbjct: 163 GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKKPPPG 222

Query: 62  FFDVSEEDRPVEQP 121
           FFDVSEEDRPVEQP
Sbjct: 223 FFDVSEEDRPVEQP 236

Query: 122  181
           
Sbjct: 283  236

Query: 182  224
           
Sbjct: 343  236

[Close]

BLAST of CU141744 vs. NCBI nr
Match: gi|659107433|ref|XP_008453669.1| (PREDICTED: LOW QUALITY PROTEIN: cell division cycle 5-like protein [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-17
Identity = 59/74 (79.73%), Postives = 60/74 (81.08%), Query Frame = 2


Query: 2   GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKEKRNRLQC*NSF*EKASSG 61
           GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRK K         F +K   G
Sbjct: 163 GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKKPPPG 222

Query: 62  FFDVSEEDRPVEQP 121
           FFDVSEEDRPVEQP
Sbjct: 223 FFDVSEEDRPVEQP 236

Query: 122  181
           
Sbjct: 283  236

Query: 182  224
           
Sbjct: 343  236

[Close]

BLAST of CU141744 vs. NCBI nr
Match: gi|659122536|ref|XP_008461195.1| (PREDICTED: LOW QUALITY PROTEIN: cell division cycle 5-like protein [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 3.2e-17
Identity = 58/74 (78.38%), Postives = 60/74 (81.08%), Query Frame = 2


Query: 2   GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKEKRNRLQC*NSF*EKASSG 61
           GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRK K         F ++   G
Sbjct: 163 GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPG 222

Query: 62  FFDVSEEDRPVEQP 121
           FFDVSEEDRPVEQP
Sbjct: 223 FFDVSEEDRPVEQP 236

Query: 122  181
           
Sbjct: 283  236

Query: 182  224
           
Sbjct: 343  236

[Close]

BLAST of CU141744 vs. NCBI nr
Match: gi|700189970|gb|KGN45203.1| (hypothetical protein Csa_7G431360 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 4.1e-17
Identity = 58/74 (78.38%), Postives = 59/74 (79.73%), Query Frame = 2


Query: 2   GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKEKRNRLQC*NSF*EKASSG 61
           GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRK K         F +K   G
Sbjct: 163 GKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKKPPPG 222

Query: 62  FFDVSEEDRPVEQP 121
           FFDV EEDRPVEQP
Sbjct: 223 FFDVGEEDRPVEQP 236

Query: 122  181
           
Sbjct: 283  236

Query: 182  224
           
Sbjct: 343  236

The following BLAST results are available for this feature:

BLAST of CU141744 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CDC5L_ARATH	2.6e-19	68.49	Cell division cycle 5-like protein OS=Arabidopsis thaliana GN=CDC5 PE=1 SV=2	[more]
CDC5L_NEMVE	1.2e-16	60.81	Cell division cycle 5-related protein OS=Nematostella vectensis GN=cdc5l PE=3 SV...	[more]
CDC5L_BOVIN	3.3e-14	58.82	Cell division cycle 5-like protein OS=Bos taurus GN=CDC5L PE=2 SV=1	[more]
CDC5L_MOUSE	3.3e-14	58.82	Cell division cycle 5-like protein OS=Mus musculus GN=Cdc5l PE=1 SV=2	[more]
CDC5L_RAT	3.3e-14	58.82	Cell division cycle 5-like protein OS=Rattus norvegicus GN=Cdc5l PE=1 SV=2	[more]

BLAST of CU141744 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0E8_CUCSA	2.5e-21	79.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G682630 PE=4 SV=1	[more]
A0A0A0K6R7_CUCSA	7.3e-21	78.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431360 PE=4 SV=1	[more]
A0A0K9RDE1_SPIOL	2.1e-20	75.68	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_079390 PE=4 SV=1	[more]
M5WK14_PRUPE	2.8e-20	75.68	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000753mg PE=4 SV=1	[more]
A0A0J8CQ19_BETVU	2.8e-20	75.68	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g079310 PE=4 S...	[more]

BLAST of CU141744 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778665422\|ref\|XP_011648556.1\|	1.4e-17	79.73	PREDICTED: LOW QUALITY PROTEIN: cell division cycle 5-like protein [Cucumis sati...	[more]
gi\|700211673\|gb\|KGN66769.1\|	1.4e-17	79.73	hypothetical protein Csa_1G682630 [Cucumis sativus]	[more]
gi\|659107433\|ref\|XP_008453669.1\|	1.4e-17	79.73	PREDICTED: LOW QUALITY PROTEIN: cell division cycle 5-like protein [Cucumis melo...	[more]
gi\|659122536\|ref\|XP_008461195.1\|	3.2e-17	78.38	PREDICTED: LOW QUALITY PROTEIN: cell division cycle 5-like protein [Cucumis melo...	[more]
gi\|700189970\|gb\|KGN45203.1\|	4.1e-17	78.38	hypothetical protein Csa_7G431360 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G682630	Csa1G682630	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0088693	G0088693	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 6..26 scor