CU141736 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU141736
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 8254755 .. 8255015 (-)
Sequence length260
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

GGGTTCTTGGGTACCAAATCGGTAACACACTGTTCCTACCCCGAGATCTACTCCGCCGGGAACTCCCAGCCAACGGATTCTCACGGCTCAACACTGGAGTTCTATAAAGAAATCTATTACGCCCAATTCCGCCAGAAATGGGAGAACCAAAAGTACGTCTCAGATTTGTACCACCTCCACCAGGGCCGGGATTCGTAGGTCTTTGTCGAGCAGTATTGGTCGTAGTGGCGCGTGCAATCGGAGTACCTATCAAATTAGAA
Library
Library categoryESTs
gynoecious flower library1
Homology
[Close]
BLAST of CU141736 vs. TrEMBL
Match: A0A0A0KY99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152290 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.0e-13
Identity = 40/54 (74.07%), Postives = 40/54 (74.07%), Query Frame = -2 

Query: 2   LRRTFGSPISGGIGRNRFLYRTPVLSRENPLAXXXXXXXXXXXXXVLPIWYPRT 61
           LRRTFGSPISGGIGRNRFLYRTPVLSRENP A             VLPIWYPRT
Sbjct: 130 LRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRT 183

Query: 62   121
           
Sbjct: 190  183

Query: 122  164
           
Sbjct: 250  183

[Close]
BLAST of CU141736 vs. NCBI nr
Match: gi|700198666|gb|KGN53824.1| (hypothetical protein Csa_4G152290 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 4.2e-13
Identity = 40/54 (74.07%), Postives = 40/54 (74.07%), Query Frame = -2 

Query: 2   LRRTFGSPISGGIGRNRFLYRTPVLSRENPLAXXXXXXXXXXXXXVLPIWYPRT 61
           LRRTFGSPISGGIGRNRFLYRTPVLSRENP A             VLPIWYPRT
Sbjct: 130 LRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRT 183

Query: 62   121
           
Sbjct: 190  183

Query: 122  164
           
Sbjct: 250  183

[Close]
BLAST of CU141736 vs. NCBI nr
Match: gi|659121757|ref|XP_008460799.1| (PREDICTED: protein POLYCHOME [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 4.2e-13
Identity = 40/54 (74.07%), Postives = 40/54 (74.07%), Query Frame = -2 

Query: 2   LRRTFGSPISGGIGRNRFLYRTPVLSRENPLAXXXXXXXXXXXXXVLPIWYPRT 61
           LRRTFGSPISGGIGRNRFLYRTPVLSRENP A             VLPIWYPRT
Sbjct: 66  LRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRT 119

Query: 62   121
           
Sbjct: 126  119

Query: 122  164
           
Sbjct: 186  119

[Close]
BLAST of CU141736 vs. NCBI nr
Match: gi|449464890|ref|XP_004150162.1| (PREDICTED: protein POLYCHOME [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 4.2e-13
Identity = 40/54 (74.07%), Postives = 40/54 (74.07%), Query Frame = -2 

Query: 2   LRRTFGSPISGGIGRNRFLYRTPVLSRENPLAXXXXXXXXXXXXXVLPIWYPRT 61
           LRRTFGSPISGGIGRNRFLYRTPVLSRENP A             VLPIWYPRT
Sbjct: 66  LRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRT 119

Query: 62   121
           
Sbjct: 126  119

Query: 122  164
           
Sbjct: 186  119

The following BLAST results are available for this feature:
BLAST of CU141736 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY99_CUCSA5.0e-1374.07Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152290 PE=4 SV=1[more]
BLAST of CU141736 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198666|gb|KGN53824.1|4.2e-1374.07hypothetical protein Csa_4G152290 [Cucumis sativus][more]
gi|659121757|ref|XP_008460799.1|4.2e-1374.07PREDICTED: protein POLYCHOME [Cucumis melo][more]
gi|449464890|ref|XP_004150162.1|4.2e-1374.07PREDICTED: protein POLYCHOME [Cucumis sativus][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G152290Csa4G152290gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0088584G0088584EST