CU140760 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU140760
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 14664596 .. 14664814 (+)
Sequence length	218

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ACAGTATGATCATAAGACCCAGTGATAAACATGTCCATGCTAGCTGGGGAGCAGGCTCCACATCTCACATAGTCCTTATGGCCCAAAAAATCTGAAATTGGAGTCTGACTTGCCACATCCCAGTACTTAACGACTGCATCATCCCCACCAGATACCAAGTGGAGCTTATCAAGAACGGGGTACTGGACAAATTGAACTGGACGTGAGTGTGAACGAAG

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU140760 vs. Swiss-Prot
Match: SWA1_ARATH (Protein SLOW WALKER 1 OS=Arabidopsis thaliana GN=SWA1 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.3e-27
Identity = 55/72 (76.39%), Postives = 57/72 (79.17%), Query Frame = -1


Query: 3   LRSHSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPAS 62
           LRSHS P +FV+YPV DKLHLVSGGDD VVKYWDVA  T ISD LGHKDYVRCG CSP +
Sbjct: 131 LRSHSAPARFVKYPVQDKLHLVSGGDDGVVKYWDVAGATVISDLLGHKDYVRCGDCSPVN 190

Query: 63  MDMFITGSYDHT 122
             M +TGSYDHT
Sbjct: 191 DSMLVTGSYDHT 202

Query: 123  182
           
Sbjct: 251  202

Query: 183  219
           
Sbjct: 311  202

[Close]

BLAST of CU140760 vs. Swiss-Prot
Match: UTP15_BOVIN (U3 small nucleolar RNA-associated protein 15 homolog OS=Bos taurus GN=UTP15 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.5e-13
Identity = 34/69 (49.28%), Postives = 41/69 (59.42%), Query Frame = -1


Query: 3   HSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPASMDM 62
           H++ V  V +   DK H+VSG DD  VK WD+ +   I  F  H DYVRCG  S  + D+
Sbjct: 121 HTKAVHSVDFTA-DKYHVVSGADDYTVKLWDIPNSKEILTFKEHSDYVRCGCASKLNTDL 180

Query: 63  FITGSYDHT 122
           F+TGSYDHT
Sbjct: 181 FVTGSYDHT 188

Query: 123  182
           
Sbjct: 241  188

Query: 183  210
           
Sbjct: 301  188

[Close]

BLAST of CU140760 vs. Swiss-Prot
Match: UTP15_HUMAN (U3 small nucleolar RNA-associated protein 15 homolog OS=Homo sapiens GN=UTP15 PE=1 SV=3)

HSP 1 Score: 75.1 bits (183), Expect = 3.5e-13
Identity = 35/69 (50.72%), Postives = 41/69 (59.42%), Query Frame = -1


Query: 3   HSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPASMDM 62
           H++ V  V +   DK H+VSG DD  VK WD+ +   I  F  H DYVRCG  S  + D+
Sbjct: 121 HTKAVHTVDFTA-DKYHVVSGADDYTVKLWDIPNSKEILTFKEHSDYVRCGCASKLNPDL 180

Query: 63  FITGSYDHT 122
           FITGSYDHT
Sbjct: 181 FITGSYDHT 188

Query: 123  182
           
Sbjct: 241  188

Query: 183  210
           
Sbjct: 301  188

[Close]

BLAST of CU140760 vs. Swiss-Prot
Match: UTP15_RAT (U3 small nucleolar RNA-associated protein 15 homolog OS=Rattus norvegicus GN=Utp15 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.6e-13
Identity = 34/69 (49.28%), Postives = 41/69 (59.42%), Query Frame = -1


Query: 3   HSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPASMDM 62
           H++ V  V +   DK H+VSG DD  VK WD+ +   I  F  H DYVRCG  S  + D+
Sbjct: 121 HTKAVHTVDFTA-DKYHVVSGADDYTVKLWDIPNSKEILTFKEHSDYVRCGCASKLNPDL 180

Query: 63  FITGSYDHT 122
           F+TGSYDHT
Sbjct: 181 FVTGSYDHT 188

Query: 123  182
           
Sbjct: 241  188

Query: 183  210
           
Sbjct: 301  188

HSP 2 Score: 47.4 bits (111), Expect = 7.8e-05
Identity = 27/94 (28.72%), Postives = 36/94 (38.30%), Query Frame = -1


Query: 3   LVSGGDDAVVKYWDVASQTPISDFLG---------------------------------- 62
           LV+G +D VV+ +D++ + P+  F G                                  
Sbjct: 95  LVAGSEDGVVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNS 154

Query: 63  --------HKDYVRCGACSPASMDMFITGSYDHT 122
                   H DYVRCG  S  + D+F+TGSYDHT
Sbjct: 155 KEILTFKEHSDYVRCGCASKLNPDLFVTGSYDHT 188

Query: 123  159
           
Sbjct: 215  188

[Close]

BLAST of CU140760 vs. Swiss-Prot
Match: UTP15_PONAB (U3 small nucleolar RNA-associated protein 15 homolog OS=Pongo abelii GN=UTP15 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.6e-13
Identity = 34/69 (49.28%), Postives = 41/69 (59.42%), Query Frame = -1


Query: 3   HSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPASMDM 62
           H++ V  V +   DK H+VSG DD  VK WD+ +   +  F  H DYVRCG  S  + D+
Sbjct: 121 HTKAVHTVDFTA-DKYHVVSGADDYTVKLWDIPNSKEVLTFKEHSDYVRCGCASKLNPDL 180

Query: 63  FITGSYDHT 122
           FITGSYDHT
Sbjct: 181 FITGSYDHT 188

Query: 123  182
           
Sbjct: 241  188

Query: 183  210
           
Sbjct: 301  188

[Close]

BLAST of CU140760 vs. TrEMBL
Match: A0A0A0K5R9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390220 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = -1


Query: 3   LRSHSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPAS 62
           LRSHSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPAS
Sbjct: 127 LRSHSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPAS 186

Query: 63  MDMFITGSYDHT 122
           MDMFITGSYDHT
Sbjct: 187 MDMFITGSYDHT 198

Query: 123  182
           
Sbjct: 247  198

Query: 183  219
           
Sbjct: 307  198

[Close]

BLAST of CU140760 vs. TrEMBL
Match: M5XRZ1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003776mg PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-28
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = -1


Query: 3   LRSHSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPAS 62
           LRSH+RP +FV+YPV DKLHLVSGGDDA+VKYWDV+ +TPI D LGHKDYVRCG CSP S
Sbjct: 125 LRSHTRPARFVKYPVADKLHLVSGGDDAIVKYWDVSGETPICDLLGHKDYVRCGDCSPVS 184

Query: 63  MDMFITGSYDHT 122
            DMFITGSYDHT
Sbjct: 185 ADMFITGSYDHT 196

Query: 123  182
           
Sbjct: 245  196

Query: 183  219
           
Sbjct: 305  196

[Close]

BLAST of CU140760 vs. TrEMBL
Match: A0A067KXL4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08356 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.3e-26
Identity = 53/72 (73.61%), Postives = 63/72 (87.50%), Query Frame = -1


Query: 3   LRSHSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPAS 62
           LRSH+RP +FV+YP+LDKLHLVSGGDDA+VKYWDVA +  + D LGHKDYVRCG CSP +
Sbjct: 130 LRSHTRPARFVKYPILDKLHLVSGGDDAIVKYWDVAGEIVVLDLLGHKDYVRCGDCSPVN 189

Query: 63  MDMFITGSYDHT 122
            +MF+TGSYDHT
Sbjct: 190 GEMFVTGSYDHT 201

Query: 123  182
           
Sbjct: 250  201

Query: 183  219
           
Sbjct: 310  201

[Close]

BLAST of CU140760 vs. TrEMBL
Match: A0A061DQB4_THECC (Transducin family protein / WD-40 repeat family protein OS=Theobroma cacao GN=TCM_004505 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.6e-26
Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = -1


Query: 3   LRSHSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPAS 62
           LRSH RPV+FV+YPVLDKLHL+SGG+DAVVK+WDVA ++ + D +GHKDYV+CG CSP S
Sbjct: 136 LRSHIRPVRFVKYPVLDKLHLLSGGEDAVVKFWDVAGESVVLDLMGHKDYVQCGDCSPVS 195

Query: 63  MDMFITGSYDHT 122
            DMFITGSYDHT
Sbjct: 196 ADMFITGSYDHT 207

Query: 123  182
           
Sbjct: 256  207

Query: 183  219
           
Sbjct: 316  207

[Close]

BLAST of CU140760 vs. TrEMBL
Match: A0A0D2P7A2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G054300 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.6e-26
Identity = 53/72 (73.61%), Postives = 64/72 (88.89%), Query Frame = -1


Query: 3   LRSHSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPAS 62
           LRSH+RPV+FV+YPVLDKLHL+SGGDDAVVK+WDVA ++ + D +GHKDYVRC  CSP S
Sbjct: 136 LRSHTRPVRFVKYPVLDKLHLLSGGDDAVVKFWDVAGESVVLDLIGHKDYVRCSDCSPVS 195

Query: 63  MDMFITGSYDHT 122
            D+F+TGSYDHT
Sbjct: 196 PDLFVTGSYDHT 207

Query: 123  182
           
Sbjct: 256  207

Query: 183  219
           
Sbjct: 316  207

[Close]

BLAST of CU140760 vs. NCBI nr
Match: gi|449462302|ref|XP_004148880.1| (PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 3.9e-36
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = -1


Query: 3   LRSHSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPAS 62
           LRSHSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPAS
Sbjct: 127 LRSHSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPAS 186

Query: 63  MDMFITGSYDHT 122
           MDMFITGSYDHT
Sbjct: 187 MDMFITGSYDHT 198

Query: 123  182
           
Sbjct: 247  198

Query: 183  219
           
Sbjct: 307  198

[Close]

BLAST of CU140760 vs. NCBI nr
Match: gi|659101087|ref|XP_008451418.1| (PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Cucumis melo])

HSP 1 Score: 158.7 bits (400), Expect = 3.9e-36
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = -1


Query: 3   LRSHSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPAS 62
           LRSHSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPAS
Sbjct: 127 LRSHSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPAS 186

Query: 63  MDMFITGSYDHT 122
           MDMFITGSYDHT
Sbjct: 187 MDMFITGSYDHT 198

Query: 123  182
           
Sbjct: 247  198

Query: 183  219
           
Sbjct: 307  198

[Close]

BLAST of CU140760 vs. NCBI nr
Match: gi|694440585|ref|XP_009347103.1| (PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Pyrus x bretschneideri])

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-29
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = -1


Query: 3   LRSHSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPAS 62
           L+SHSRP +FV+YP  DKLHLVSGGDDA+VKYWDVA +TPISD LGHKDYVRCG CSP S
Sbjct: 125 LKSHSRPARFVKYPASDKLHLVSGGDDAIVKYWDVAGETPISDLLGHKDYVRCGDCSPVS 184

Query: 63  MDMFITGSYDHT 122
            DMF+TGSYDHT
Sbjct: 185 SDMFVTGSYDHT 196

Query: 123  182
           
Sbjct: 245  196

Query: 183  219
           
Sbjct: 305  196

[Close]

BLAST of CU140760 vs. NCBI nr
Match: gi|645231550|ref|XP_008222448.1| (PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Prunus mume])

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-29
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = -1


Query: 3   LRSHSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPAS 62
           LRSH+RP +FV+YPV DKLHLVSGGDDA+VKYWDV+ +TPI D LGHKDYVRCG CSP S
Sbjct: 125 LRSHTRPARFVKYPVADKLHLVSGGDDAIVKYWDVSGETPICDLLGHKDYVRCGDCSPVS 184

Query: 63  MDMFITGSYDHT 122
            DMFITGSYDHT
Sbjct: 185 ADMFITGSYDHT 196

Query: 123  182
           
Sbjct: 245  196

Query: 183  219
           
Sbjct: 305  196

[Close]

BLAST of CU140760 vs. NCBI nr
Match: gi|596170855|ref|XP_007223119.1| (hypothetical protein PRUPE_ppa003776mg [Prunus persica])

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-29
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = -1


Query: 3   LRSHSRPVQFVQYPVLDKLHLVSGGDDAVVKYWDVASQTPISDFLGHKDYVRCGACSPAS 62
           LRSH+RP +FV+YPV DKLHLVSGGDDA+VKYWDV+ +TPI D LGHKDYVRCG CSP S
Sbjct: 125 LRSHTRPARFVKYPVADKLHLVSGGDDAIVKYWDVSGETPICDLLGHKDYVRCGDCSPVS 184

Query: 63  MDMFITGSYDHT 122
            DMFITGSYDHT
Sbjct: 185 ADMFITGSYDHT 196

Query: 123  182
           
Sbjct: 245  196

Query: 183  219
           
Sbjct: 305  196

The following BLAST results are available for this feature:

BLAST of CU140760 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SWA1_ARATH	3.3e-27	76.39	Protein SLOW WALKER 1 OS=Arabidopsis thaliana GN=SWA1 PE=2 SV=1	[more]
UTP15_BOVIN	3.5e-13	49.28	U3 small nucleolar RNA-associated protein 15 homolog OS=Bos taurus GN=UTP15 PE=2...	[more]
UTP15_HUMAN	3.5e-13	50.72	U3 small nucleolar RNA-associated protein 15 homolog OS=Homo sapiens GN=UTP15 PE...	[more]
UTP15_RAT	4.6e-13	49.28	U3 small nucleolar RNA-associated protein 15 homolog OS=Rattus norvegicus GN=Utp...	[more]
UTP15_PONAB	4.6e-13	49.28	U3 small nucleolar RNA-associated protein 15 homolog OS=Pongo abelii GN=UTP15 PE...	[more]

BLAST of CU140760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5R9_CUCSA	3.0e-35	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390220 PE=4 SV=1	[more]
M5XRZ1_PRUPE	1.6e-28	80.56	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003776mg PE=4 SV=1	[more]
A0A067KXL4_JATCU	3.3e-26	73.61	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08356 PE=4 SV=1	[more]
A0A061DQB4_THECC	5.6e-26	75.00	Transducin family protein / WD-40 repeat family protein OS=Theobroma cacao GN=TC...	[more]
A0A0D2P7A2_GOSRA	5.6e-26	73.61	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G054300 PE=4 SV=1	[more]

BLAST of CU140760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462302\|ref\|XP_004148880.1\|	3.9e-36	100.00	PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Cucumis sativus...	[more]
gi\|659101087\|ref\|XP_008451418.1\|	3.9e-36	100.00	PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Cucumis melo]	[more]
gi\|694440585\|ref\|XP_009347103.1\|	1.2e-29	80.56	PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Pyrus x bretsch...	[more]
gi\|645231550\|ref\|XP_008222448.1\|	2.0e-29	80.56	PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Prunus mume]	[more]
gi\|596170855\|ref\|XP_007223119.1\|	2.0e-29	80.56	hypothetical protein PRUPE_ppa003776mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G390220	Csa7G390220	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0077053	G0077053	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 1..43 score: 9
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	G3DSA:2.130.10.10		coord: 1..73 score: 1.2
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 1..73 score: 13
IPR017986	WD40-repeat-containing domain	unknown	SSF50978	WD40 repeat-like	coord: 2..73 score: 1.76
None	No IPR available	PANTHER	PTHR19924	FAMILY NOT NAMED	coord: 1..73 score: 2.6
None	No IPR available	PANTHER	PTHR19924:SF26	U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 15 HOMOLOG	coord: 1..73 score: 2.6