CU140533 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU140533
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 22037027 .. 22045211 (+)
Sequence length	185

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TCTTGTTTTCTTTTCTGGAAACTGAGATAGAATCATATAAATTACCAATCTAAAGCAGTGATGGTAACTCCAGCCCAGAGAGGCAAAGCTCCATTACTCAGAATCTTAATAGCAATAGCACTCCCAATGACTTCCTGTATATCAGCCCCAATGAGGGCAAACTCCGCCATGACCCACGGCACAAT

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU140533 vs. Swiss-Prot
Match: NRAM3_ARATH (Metal transporter Nramp3 OS=Arabidopsis thaliana GN=NRAMP3 PE=2 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-14
Identity = 40/46 (86.96%), Postives = 40/46 (86.96%), Query Frame = -1


Query: 48  IVPWVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVTITALD 107
           +V WVMAE ALIG+DIQEVIGSAIAIKILSNG LPLWAGV ITALD
Sbjct: 133 MVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWAGVVITALD 178

Query: 108  167
           
Sbjct: 193  178

Query: 168  186
           
Sbjct: 253  178

[Close]

BLAST of CU140533 vs. Swiss-Prot
Match: NRAM4_ARATH (Metal transporter Nramp4 OS=Arabidopsis thaliana GN=NRAMP4 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-14
Identity = 42/60 (70.00%), Postives = 45/60 (75.00%), Query Frame = -1


Query: 6   IVPWVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVTITALDW*FI*FYLSFQKRK 65
           +V W+MAE ALIGADIQEVIGSAIAIKILSNG +PLWAGV ITALD     F  ++  RK
Sbjct: 129 MVLWIMAEIALIGADIQEVIGSAIAIKILSNGLVPLWAGVVITALDCFIFLFLENYGIRK 188

Query: 66   125
           
Sbjct: 189  188

Query: 126  185
           
Sbjct: 249  188

[Close]

BLAST of CU140533 vs. Swiss-Prot
Match: NRAM6_ORYSJ (Metal transporter Nramp6 OS=Oryza sativa subsp. japonica GN=NRAMP6 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.9e-13
Identity = 36/43 (83.72%), Postives = 37/43 (86.05%), Query Frame = -1


Query: 48  WVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVTITALD 107
           W+MAE A++GADIQEVIGSAIAIKILS G LPLWAGV ITALD
Sbjct: 167 WLMAEVAMVGADIQEVIGSAIAIKILSRGFLPLWAGVVITALD 209

Query: 108  167
           
Sbjct: 227  209

Query: 168  177
           
Sbjct: 287  209

[Close]

BLAST of CU140533 vs. Swiss-Prot
Match: NRAM2_ARATH (Metal transporter Nramp2 OS=Arabidopsis thaliana GN=NRAMP2 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-12
Identity = 40/59 (67.80%), Postives = 41/59 (69.49%), Query Frame = -1


Query: 6   VPWVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVTITALDW*FI*FYLSFQKRK 65
           V W MAE ALIGADIQEVIGSAIAI+ILS G LPLWAGV ITA D     F  ++  RK
Sbjct: 146 VLWSMAELALIGADIQEVIGSAIAIQILSRGFLPLWAGVVITASDCFLFLFLENYGVRK 204

Query: 66   125
           
Sbjct: 206  204

Query: 126  183
           
Sbjct: 266  204

[Close]

BLAST of CU140533 vs. Swiss-Prot
Match: NRAM2_ORYSJ (Metal transporter Nramp2 OS=Oryza sativa subsp. japonica GN=NRAMP2 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.3e-12
Identity = 36/57 (63.16%), Postives = 38/57 (66.67%), Query Frame = -1


Query: 6   WVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVTITALDW*FI*FYLSFQKRK 65
           W M E AL+GADIQEVIGSAIAIKILS G +PLW GV ITA D     F  ++  RK
Sbjct: 150 WAMTELALVGADIQEVIGSAIAIKILSAGTVPLWGGVVITAFDCFIFLFLENYGVRK 206

Query: 66   125
           
Sbjct: 210  206

Query: 126  177
           
Sbjct: 270  206

[Close]

BLAST of CU140533 vs. TrEMBL
Match: A0A0A0LN03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G423700 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.2e-15
Identity = 48/60 (80.00%), Postives = 50/60 (83.33%), Query Frame = -1


Query: 6   IVPWVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVTITALDW*FI*FYLSFQKRK 65
           IV WVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVTITALD     F  ++  RK
Sbjct: 128 IVLWVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVTITALDCFIFLFLENYGVRK 187

Query: 66   125
           
Sbjct: 188  187

Query: 126  185
           
Sbjct: 248  187

[Close]

BLAST of CU140533 vs. TrEMBL
Match: M5VXT2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004490mg PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-13
Identity = 44/60 (73.33%), Postives = 48/60 (80.00%), Query Frame = -1


Query: 6   IVPWVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVTITALDW*FI*FYLSFQKRK 65
           +V WVMAE ALIGADIQEVIGSAIAIKILSNGALPLW+GV ITALD     F  ++  RK
Sbjct: 130 MVLWVMAELALIGADIQEVIGSAIAIKILSNGALPLWSGVVITALDCFIFLFLENYGVRK 189

Query: 66   125
           
Sbjct: 190  189

Query: 126  185
           
Sbjct: 250  189

[Close]

BLAST of CU140533 vs. TrEMBL
Match: Q3ZN86_NOCCA (Nramp metal transporter-like protein OS=Noccaea caerulescens GN=Nramp3 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-13
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = -1


Query: 6   IVPWVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVTITALDW*FI*FYLSFQKRK 65
           +V WVMAE ALIG+DIQEVIGSAIAIKIL+NG LPLWAGV ITALD  F  F+ ++  RK
Sbjct: 137 MVLWVMAELALIGSDIQEVIGSAIAIKILTNGILPLWAGVIITALDCFFFLFFENYGIRK 196

Query: 66   125
           
Sbjct: 197  196

Query: 126  185
           
Sbjct: 257  196

[Close]

BLAST of CU140533 vs. TrEMBL
Match: A6YPU3_NOCCA (Metal transporter NRAMP3 OS=Noccaea caerulescens GN=NRAMP3 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-13
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = -1


Query: 6   IVPWVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVTITALDW*FI*FYLSFQKRK 65
           +V WVMAE ALIG+DIQEVIGSAIAIKIL+NG LPLWAGV ITALD  F  F+ ++  RK
Sbjct: 137 MVLWVMAELALIGSDIQEVIGSAIAIKILTNGILPLWAGVIITALDCFFFLFFENYGIRK 196

Query: 66   125
           
Sbjct: 197  196

Query: 126  185
           
Sbjct: 257  196

[Close]

BLAST of CU140533 vs. TrEMBL
Match: A0A165FX05_9ROSA (Metal transporter Nramp3 OS=Pyrus betulifolia GN=Nramp3 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.7e-13
Identity = 44/60 (73.33%), Postives = 48/60 (80.00%), Query Frame = -1


Query: 6   IVPWVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVTITALDW*FI*FYLSFQKRK 65
           +V WVMAE ALIGADIQEVIGSAIAIKILSNGALPLW+GV ITALD     F  ++  RK
Sbjct: 130 MVLWVMAELALIGADIQEVIGSAIAIKILSNGALPLWSGVLITALDCFIFLFLENYGVRK 189

Query: 66   125
           
Sbjct: 190  189

Query: 126  185
           
Sbjct: 250  189

[Close]

BLAST of CU140533 vs. NCBI nr
Match: gi|449468323|ref|XP_004151871.1| (PREDICTED: metal transporter Nramp3-like [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-15
Identity = 48/60 (80.00%), Postives = 50/60 (83.33%), Query Frame = -1


Query: 6   IVPWVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVTITALDW*FI*FYLSFQKRK 65
           IV WVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVTITALD     F  ++  RK
Sbjct: 128 IVLWVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVTITALDCFIFLFLENYGVRK 187

Query: 66   125
           
Sbjct: 188  187

Query: 126  185
           
Sbjct: 248  187

[Close]

BLAST of CU140533 vs. NCBI nr
Match: gi|659111615|ref|XP_008455821.1| (PREDICTED: metal transporter Nramp3-like [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-14
Identity = 47/60 (78.33%), Postives = 49/60 (81.67%), Query Frame = -1


Query: 6   IVPWVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVTITALDW*FI*FYLSFQKRK 65
           IV WVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGV ITALD     F  ++  RK
Sbjct: 128 IVLWVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVIITALDCFIFLFLENYGVRK 187

Query: 66   125
           
Sbjct: 188  187

Query: 126  185
           
Sbjct: 248  187

[Close]

BLAST of CU140533 vs. NCBI nr
Match: gi|57231016|gb|AAW47269.1| (Nramp metal transporter-like protein [Noccaea caerulescens])

HSP 1 Score: 82.4 bits (202), Expect = 3.0e-13
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = -1


Query: 6   IVPWVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVTITALDW*FI*FYLSFQKRK 65
           +V WVMAE ALIG+DIQEVIGSAIAIKIL+NG LPLWAGV ITALD  F  F+ ++  RK
Sbjct: 137 MVLWVMAELALIGSDIQEVIGSAIAIKILTNGILPLWAGVIITALDCFFFLFFENYGIRK 196

Query: 66   125
           
Sbjct: 197  196

Query: 126  185
           
Sbjct: 257  196

[Close]

BLAST of CU140533 vs. NCBI nr
Match: gi|645220057|ref|XP_008238525.1| (PREDICTED: metal transporter Nramp3 [Prunus mume])

HSP 1 Score: 82.4 bits (202), Expect = 3.0e-13
Identity = 44/60 (73.33%), Postives = 48/60 (80.00%), Query Frame = -1


Query: 6   IVPWVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVTITALDW*FI*FYLSFQKRK 65
           +V WVMAE ALIGADIQEVIGSAIAIKILSNGALPLW+GV ITALD     F  ++  RK
Sbjct: 130 MVLWVMAELALIGADIQEVIGSAIAIKILSNGALPLWSGVVITALDCFIFLFLENYGVRK 189

Query: 66   125
           
Sbjct: 190  189

Query: 126  185
           
Sbjct: 250  189

[Close]

BLAST of CU140533 vs. NCBI nr
Match: gi|595823396|ref|XP_007205063.1| (hypothetical protein PRUPE_ppa004490mg [Prunus persica])

HSP 1 Score: 82.4 bits (202), Expect = 3.0e-13
Identity = 44/60 (73.33%), Postives = 48/60 (80.00%), Query Frame = -1


Query: 6   IVPWVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVTITALDW*FI*FYLSFQKRK 65
           +V WVMAE ALIGADIQEVIGSAIAIKILSNGALPLW+GV ITALD     F  ++  RK
Sbjct: 130 MVLWVMAELALIGADIQEVIGSAIAIKILSNGALPLWSGVVITALDCFIFLFLENYGVRK 189

Query: 66   125
           
Sbjct: 190  189

Query: 126  185
           
Sbjct: 250  189

The following BLAST results are available for this feature:

BLAST of CU140533 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NRAM3_ARATH	1.2e-14	86.96	Metal transporter Nramp3 OS=Arabidopsis thaliana GN=NRAMP3 PE=2 SV=2	[more]
NRAM4_ARATH	1.2e-14	70.00	Metal transporter Nramp4 OS=Arabidopsis thaliana GN=NRAMP4 PE=2 SV=1	[more]
NRAM6_ORYSJ	3.9e-13	83.72	Metal transporter Nramp6 OS=Oryza sativa subsp. japonica GN=NRAMP6 PE=2 SV=1	[more]
NRAM2_ARATH	1.9e-12	67.80	Metal transporter Nramp2 OS=Arabidopsis thaliana GN=NRAMP2 PE=2 SV=1	[more]
NRAM2_ORYSJ	7.3e-12	63.16	Metal transporter Nramp2 OS=Oryza sativa subsp. japonica GN=NRAMP2 PE=2 SV=1	[more]

BLAST of CU140533 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LN03_CUCSA	2.2e-15	80.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G423700 PE=3 SV=1	[more]
M5VXT2_PRUPE	2.1e-13	73.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004490mg PE=3 SV=1	[more]
Q3ZN86_NOCCA	2.1e-13	71.67	Nramp metal transporter-like protein OS=Noccaea caerulescens GN=Nramp3 PE=2 SV=1	[more]
A6YPU3_NOCCA	2.1e-13	71.67	Metal transporter NRAMP3 OS=Noccaea caerulescens GN=NRAMP3 PE=2 SV=1	[more]
A0A165FX05_9ROSA	2.7e-13	73.33	Metal transporter Nramp3 OS=Pyrus betulifolia GN=Nramp3 PE=2 SV=1	[more]

BLAST of CU140533 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449468323\|ref\|XP_004151871.1\|	3.2e-15	80.00	PREDICTED: metal transporter Nramp3-like [Cucumis sativus]	[more]
gi\|659111615\|ref\|XP_008455821.1\|	1.6e-14	78.33	PREDICTED: metal transporter Nramp3-like [Cucumis melo]	[more]
gi\|57231016\|gb\|AAW47269.1\|	3.0e-13	71.67	Nramp metal transporter-like protein [Noccaea caerulescens]	[more]
gi\|645220057\|ref\|XP_008238525.1\|	3.0e-13	73.33	PREDICTED: metal transporter Nramp3 [Prunus mume]	[more]
gi\|595823396\|ref\|XP_007205063.1\|	3.0e-13	73.33	hypothetical protein PRUPE_ppa004490mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001046	NRAMP_fam

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005215	transporter activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa2G423700	Csa2G423700	gene
Csa2G423680	Csa2G423680	gene
Csa2G423690	Csa2G423690	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0074472	G0074472	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001046	NRAMP family	PRINTS	PR00447	NATRESASSCMP	coord: 3..29 score: 4.7E-15coord: 33..47 score: 4.7
IPR001046	NRAMP family	PANTHER	PTHR11706	MANGANESE TRANSPORTER	coord: 4..46 score: 5.3
IPR001046	NRAMP family	PFAM	PF01566	Nramp	coord: 3..46 score: 3.
None	No IPR available	PANTHER	PTHR11706:SF8	METAL TRANSPORTER NRAMP1 HOMOLOG	coord: 4..46 score: 5.3