CU139845 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU139845
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 3262293 .. 3262506 (+)
Sequence length	213

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TCCAGAGGTTCCCTTACCCAACACTTCTGCTGAAGCCCTCAACAAATCCTCCAAATCAAAAACCCCTAGCTGTATTGTCGAAGAATACCAACTTTTTTACTACATCGATGTTTTCATTTGCTTCCTCTTTCTTATTCTGTACCATTGCCGTAGTAGCAGCTATGGACTGAGGATTTTCGTAAGTCACTTTTTCCTTCGTATATTATCAAGGGT

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU139845 vs. TrEMBL
Match: A0A0A0LPW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031200 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 6.3e-14
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = -3


Query: 68  KEKVTYENPQSIAATTAMVQNKKEEANENIDVVKKLVFFDNTA 127
           +EKVTYENPQSIAATTAMVQNKKEE NENIDVVKKLVFFDNTA
Sbjct: 299 REKVTYENPQSIAATTAMVQNKKEETNENIDVVKKLVFFDNTA 341

Query: 128  187
           
Sbjct: 359  341

Query: 188  197
           
Sbjct: 419  341

[Close]

BLAST of CU139845 vs. TrEMBL
Match: A0A0A0LPW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031200 PE=4 SV=1)

HSP 1 Score: 41.2 bits (95), Expect = 6.2e-01
Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = -1


Query: 1   VFDLEDLLRASAEVLGKGTSG 60
           VFDLEDLLRASAEVLGKGT G
Sbjct: 343 VFDLEDLLRASAEVLGKGTFG 363

Query: 61   64
           
Sbjct: 403  363

[Close]

BLAST of CU139845 vs. NCBI nr
Match: gi|778656694|ref|XP_004137566.2| (PREDICTED: probable inactive receptor kinase RLK902 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-13
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = -3


Query: 68  KEKVTYENPQSIAATTAMVQNKKEEANENIDVVKKLVFFDNTA 127
           +EKVTYENPQSIAATTAMVQNKKEE NENIDVVKKLVFFDNTA
Sbjct: 299 REKVTYENPQSIAATTAMVQNKKEETNENIDVVKKLVFFDNTA 341

Query: 128  187
           
Sbjct: 359  341

Query: 188  197
           
Sbjct: 419  341

The following BLAST results are available for this feature:

BLAST of CU139845 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPW5_CUCSA	6.3e-14	95.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031200 PE=4 SV=1	[more]
A0A0A0LPW5_CUCSA	6.2e-01	95.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031200 PE=4 SV=1	[more]

BLAST of CU139845 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778656694\|ref\|XP_004137566.2\|	1.5e-13	95.35	PREDICTED: probable inactive receptor kinase RLK902 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G031200	Csa1G031200	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0066742	G0066742	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR27008	FAMILY NOT NAMED	coord: 3..48 score: 5.5
None	No IPR available	PANTHER	PTHR27008:SF19	INACTIVE RECEPTOR KINASE RLK902-RELATED	coord: 3..48 score: 5.5