CU139527 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU139527
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 6004877 .. 6005154 (-)
Sequence length	278

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTGAGTGAGAGGGGGATATTGAGATTCTTTGCCCAAAATATTAGCTTTAATAGCAAGGCAAAGACAAGTAGCCGCTTCAACGTCAATAAGTCCTTCCATCATCTTACAACATTTTGGACACTTTTCGATGTCAGCATTAGTTTCACCATTGAGTAATTTCGAGCAAATTTCAAAATTAAGAGTGTTTTTCGGACATTTTTTTCTTGCCTTGGTTGAAGGTGTAGTAGGTCTAAGGTTCGATGTGTCATAACAGGAAACGAAAGTCGACGAGAGGAGAA

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU139527 vs. Swiss-Prot
Match: 14KD_DAUCA (14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.2e-11
Identity = 33/75 (44.00%), Postives = 43/75 (57.33%), Query Frame = -3


Query: 13  RPTTPSTKARKKCPKNTLNFEICSKLLNGETNADIEKCPK--CCKMMEGLIDVEAATCLC 72
           +PT     +  KCP++ L   +C+ +LN   N  I   P   CC ++EGL+++EAA CLC
Sbjct: 42  KPTPTPYPSAGKCPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLC 101

Query: 73  LAIKANILGKESQYP 132
            AIKANILGK    P
Sbjct: 102 TAIKANILGKNLNLP 116

Query: 133  192
           
Sbjct: 162  116

Query: 193  232
           
Sbjct: 222  116

[Close]

BLAST of CU139527 vs. Swiss-Prot
Match: CCDP_MAIZE (Cortical cell-delineating protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-10
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = -3


Query: 13  TPSTKARKKCPKNTLNFEICSKLLNGETNADIEKCPKCCKMMEGLIDVEAATCLCLAIKA 72
           TPS+ +  +CP + L  ++C+K+L G     + +  +CC ++EGL+D++AA CLC AIKA
Sbjct: 39  TPSSHSHGRCPIDALKLKVCAKVL-GLVKVGLPQYEQCCPLLEGLVDLDAALCLCTAIKA 98

Query: 73  NILGKESQYP 132
           N+LG     P
Sbjct: 99  NVLGIHLNVP 107

Query: 133  192
           
Sbjct: 159  107

Query: 193  223
           
Sbjct: 219  107

[Close]

BLAST of CU139527 vs. Swiss-Prot
Match: LBP65_ARATH (Putative lipid-binding protein At4g00165 OS=Arabidopsis thaliana GN=At4g00165 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-08
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = -3


Query: 31  PTTPSTKARKKCPKNTLNFEICSKLLNGETNADIEKCP--KCCKMMEGLIDVEAATCLCL 90
           P  P+ +A  KCP++TL F +C   L G  +  I   P  +CC +++GL D EAA CLC 
Sbjct: 35  PPPPAKQATTKCPRDTLKFGVCGSWL-GLVSEVIGTPPSQECCSLIKGLADFEAAVCLCT 94

Query: 91  AIKANILG 150
           A+K +ILG
Sbjct: 95  ALKTSILG 101

Query: 151  210
           
Sbjct: 155  101

Query: 211  229
           
Sbjct: 215  101

[Close]

BLAST of CU139527 vs. Swiss-Prot
Match: ERLL2_ARATH (pEARLI1-like lipid transfer protein 2 OS=Arabidopsis thaliana GN=At4g12490 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-08
Identity = 28/79 (35.44%), Postives = 45/79 (56.96%), Query Frame = -3


Query: 13  TSNLRPTTPSTKARKKCPKNTLNFEICSKLLNGETNADI-EKCPK-CCKMMEGLIDVEAA 72
           T  + P TP +     CP + L   +C+ +L+G  N  + +  P+ CC +++GL+D++AA
Sbjct: 85  TPVIPPRTPGSSGN--CPIDALRLGVCANVLSGLLNVQLGQPSPQPCCSLIQGLVDLDAA 144

Query: 73  TCLCLAIKANILGKESQYP 132
            CLC A++AN+LG     P
Sbjct: 145 VCLCTALRANVLGINLNVP 161

Query: 133  192
           
Sbjct: 205  161

Query: 193  244
           
Sbjct: 265  161

[Close]

BLAST of CU139527 vs. Swiss-Prot
Match: ERLL1_ARATH (pEARLI1-like lipid transfer protein 1 OS=Arabidopsis thaliana GN=AZI1 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-08
Identity = 28/80 (35.00%), Postives = 43/80 (53.75%), Query Frame = -3


Query: 13  NLRPTTPST---KARKKCPKNTLNFEICSKLLNGETNADIEK--CPKCCKMMEGLIDVEA 72
           N RP TP      +   CP + L   +C+ +L+   N  + +    +CC +++GL+DV+A
Sbjct: 61  NPRPVTPPRTPGSSGNSCPIDALKLGVCANVLSSLLNIQLGQPSSQQCCSLIQGLVDVDA 120

Query: 73  ATCLCLAIKANILGKESQYP 132
           A CLC A++AN+LG     P
Sbjct: 121 AICLCTALRANVLGINLNVP 140

Query: 133  192
           
Sbjct: 181  140

Query: 193  238
           
Sbjct: 241  140

[Close]

BLAST of CU139527 vs. TrEMBL
Match: A0A0A0KKK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161300 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.6e-41
Identity = 84/88 (95.45%), Postives = 84/88 (95.45%), Query Frame = -3


Query: 13  LLSSTFVSCYDTSNLRPTTPSTKARKKCPKNTLNFEICSKLLNGETNADIEKCPKCCKMM 72
           LLSSTFVSCYDTSNLRPTTPSTKARKKCPKNTLNFEICSKLLNGETNADIEKCPKCCKMM
Sbjct: 17  LLSSTFVSCYDTSNLRPTTPSTKARKKCPKNTLNFEICSKLLNGETNADIEKCPKCCKMM 76

Query: 73  EGLIDVEAATCLCLAIKANILGKESQYP 132
           EGLIDVEAATCLCLAIKANILGK    P
Sbjct: 77  EGLIDVEAATCLCLAIKANILGKNLNIP 104

Query: 133  192
           
Sbjct: 137  104

Query: 193  252
           
Sbjct: 197  104

Query: 253  277
           
Sbjct: 257  104

[Close]

BLAST of CU139527 vs. TrEMBL
Match: A5B2G2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0154g00290 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.7e-12
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = -3


Query: 13  PTTPSTKARKKCPKNTLNFEICSKLLNGETNADIEKCP--KCCKMMEGLIDVEAATCLCL 72
           P+TPST +   CP++ L   +C+KLLNG   A +   P   CC ++EGL+D+E A CLC 
Sbjct: 38  PSTPSTPSNGSCPRDALKLGVCAKLLNGTVGAVVGTPPVTPCCSLLEGLLDLEVAACLCT 97

Query: 73  AIKANILGKESQYP 132
           AIKANILG     P
Sbjct: 98  AIKANILGIHLDIP 111

Query: 133  192
           
Sbjct: 158  111

Query: 193  229
           
Sbjct: 218  111

[Close]

BLAST of CU139527 vs. TrEMBL
Match: B9SUW6_RICCO (14 kDa proline-rich protein DC2.15, putative OS=Ricinus communis GN=RCOM_0250430 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-11
Identity = 39/79 (49.37%), Postives = 49/79 (62.03%), Query Frame = -3


Query: 34  SCYDTS---NLRPTTPSTKARKKCPKNTLNFEICSKLLNGETNADIEKCPK--CCKMMEG 93
           SC  T    N  PT     A+K CP++TL   +C+KLLNG   A I   P   CC +++G
Sbjct: 27  SCVQTKPIPNPTPTPNLNSAKKSCPRDTLKLGVCAKLLNGPVGAVIRNPPDTPCCSVLQG 86

Query: 94  LIDVEAATCLCLAIKANIL 153
           L+D+EAA CLC AIKANIL
Sbjct: 87  LVDLEAAVCLCTAIKANIL 105

Query: 154  213
           
Sbjct: 147  105

Query: 214  256
           
Sbjct: 207  105

[Close]

BLAST of CU139527 vs. TrEMBL
Match: M5WB35_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013010mg PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.2e-11
Identity = 39/74 (52.70%), Postives = 48/74 (64.86%), Query Frame = -3


Query: 13  PTTPSTKARKKCPKNTLNFEICSKLLNGETNADIEKCP--KCCKMMEGLIDVEAATCLCL 72
           P+TPST  R  CP++TL   +C+ +LNG  N  I K P   CC +++GL DVEAA CLC 
Sbjct: 52  PSTPSTGTR--CPRDTLKLGVCANVLNGLLNITIGKPPVAPCCSLIQGLADVEAAVCLCT 111

Query: 73  AIKANILGKESQYP 132
           AIKANILG     P
Sbjct: 112 AIKANILGINLNIP 123

Query: 133  192
           
Sbjct: 172  123

Query: 193  229
           
Sbjct: 232  123

[Close]

BLAST of CU139527 vs. TrEMBL
Match: H2CT18_9BASI (Lipid transfer protein (Fragment) OS=Uromyces hobsonii PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.0e-11
Identity = 43/95 (45.26%), Postives = 56/95 (58.95%), Query Frame = -3


Query: 13  LLSSTFVSCYDTSNLRPTTPST-----KARKKCPKNTLNFEICSKLLNGETNADIEKCPK 72
           LL+S  V C  TS   PTTPS       ++ KCPK+TL   +C+ LLN   +  +   PK
Sbjct: 21  LLTSNSVPCPPTST--PTTPSHGHKHHPSKGKCPKDTLKLGVCANLLNDLVHLVVGAPPK 80

Query: 73  --CCKMMEGLIDVEAATCLCLAIKANILGKESQYP 132
             CC +++GL D+EAA CLC AIKAN+LG     P
Sbjct: 81  TPCCTLLKGLADLEAALCLCTAIKANVLGINLNVP 113

Query: 133  192
           
Sbjct: 141  113

Query: 193  252
           
Sbjct: 201  113

Query: 253  277
           
Sbjct: 261  113

[Close]

BLAST of CU139527 vs. NCBI nr
Match: gi|700195053|gb|KGN50230.1| (hypothetical protein Csa_5G161300 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-40
Identity = 84/88 (95.45%), Postives = 84/88 (95.45%), Query Frame = -3


Query: 13  LLSSTFVSCYDTSNLRPTTPSTKARKKCPKNTLNFEICSKLLNGETNADIEKCPKCCKMM 72
           LLSSTFVSCYDTSNLRPTTPSTKARKKCPKNTLNFEICSKLLNGETNADIEKCPKCCKMM
Sbjct: 17  LLSSTFVSCYDTSNLRPTTPSTKARKKCPKNTLNFEICSKLLNGETNADIEKCPKCCKMM 76

Query: 73  EGLIDVEAATCLCLAIKANILGKESQYP 132
           EGLIDVEAATCLCLAIKANILGK    P
Sbjct: 77  EGLIDVEAATCLCLAIKANILGKNLNIP 104

Query: 133  192
           
Sbjct: 137  104

Query: 193  252
           
Sbjct: 197  104

Query: 253  277
           
Sbjct: 257  104

[Close]

BLAST of CU139527 vs. NCBI nr
Match: gi|659073537|ref|XP_008437114.1| (PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-27
Identity = 65/89 (73.03%), Postives = 75/89 (84.27%), Query Frame = -3


Query: 13  LLSSTFVSCYDTSNLRPTTPSTKARKKCPKNTLNFEICSKLLNGETN-ADIEKCPKCCKM 72
           +LSSTFVSCYDTSN RPT  ++KA KKCPK+TL FEICS+LL G+T+   IEK PKCCK+
Sbjct: 17  ILSSTFVSCYDTSNPRPTPSTSKAGKKCPKDTLKFEICSELLKGQTDVVAIEKRPKCCKV 76

Query: 73  MEGLIDVEAATCLCLAIKANILGKESQYP 132
           MEGL++VEAATCLCLAIKANILGK    P
Sbjct: 77  MEGLVNVEAATCLCLAIKANILGKNLNIP 105

Query: 133  192
           
Sbjct: 137  105

Query: 193  252
           
Sbjct: 197  105

Query: 253  277
           
Sbjct: 257  105

[Close]

BLAST of CU139527 vs. NCBI nr
Match: gi|743872649|ref|XP_010906606.1| (PREDICTED: 14 kDa proline-rich protein DC2.15-like [Elaeis guineensis])

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-13
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = -3


Query: 13  LLSSTFVSCYDTSNLRPTTPSTKARKKCPKNTLNFEICSKLLNGETNADIEKCPK--CCK 72
           L+SST V C    +    TPS  +  KCP NTL   +C+K+LNG  N  + K PK  CC 
Sbjct: 22  LVSSTSVPCPPPPSKPTPTPSPSSGSKCPINTLKLGVCAKVLNGLINVSLGKPPKKPCCT 81

Query: 73  MMEGLIDVEAATCLCLAIKANILGKESQYP 132
           ++EGL+D+EAA CLC A+KA+ILG +   P
Sbjct: 82  LLEGLVDLEAAVCLCTALKASILGIKLNVP 111

Query: 133  192
           
Sbjct: 142  111

Query: 193  252
           
Sbjct: 202  111

Query: 253  277
           
Sbjct: 262  111

[Close]

BLAST of CU139527 vs. NCBI nr
Match: gi|720026384|ref|XP_010264240.1| (PREDICTED: 14 kDa proline-rich protein DC2.15-like [Nelumbo nucifera])

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = -3


Query: 13  SCYDTSNLRPTTPSTKARK-KCPKNTLNFEICSKLLNGETNADIEKCPK--CCKMMEGLI 72
           +CY+     PTTP+T A K  CP++ L   +C+KLLNG   A++   P   CC ++EGL+
Sbjct: 29  TCYNPKPT-PTTPTTPASKGSCPRDALKLGVCAKLLNGAVGAEVGNPPDHPCCTLLEGLV 88

Query: 73  DVEAATCLCLAIKANILGKESQYP 132
           D+E A CLC AIKANILG     P
Sbjct: 89  DLEVAACLCTAIKANILGINLNIP 111

Query: 133  192
           
Sbjct: 149  111

Query: 193  252
           
Sbjct: 209  111

Query: 253  256
           
Sbjct: 269  111

[Close]

BLAST of CU139527 vs. NCBI nr
Match: gi|470125318|ref|XP_004298650.1| (PREDICTED: 14 kDa proline-rich protein DC2.15-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 43/97 (44.33%), Postives = 53/97 (54.64%), Query Frame = -3


Query: 13  LLSSTFVSCYDTSNLRP-------TTPSTKARKKCPKNTLNFEICSKLLNGETNADIEKC 72
           LLS+    CY  S   P       T P   A K CP++TL   +C+KLLNG   A +   
Sbjct: 18  LLSALTSGCYTCSQPHPITTPKPITNPIPGAAKSCPRDTLKLGVCAKLLNGAVGAVVGSP 77

Query: 73  PK--CCKMMEGLIDVEAATCLCLAIKANILGKESQYP 132
           P   CC ++EGL+D+E A CLC AIKANILG     P
Sbjct: 78  PDTPCCAVLEGLVDLEVAVCLCTAIKANILGINLNIP 114

Query: 133  192
           
Sbjct: 138  114

Query: 193  252
           
Sbjct: 198  114

Query: 253  277
           
Sbjct: 258  114

The following BLAST results are available for this feature:

BLAST of CU139527 vs. Swiss-Prot


Match Name	E-value	Identity	Description
14KD_DAUCA	7.2e-11	44.00	14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1	[more]
CCDP_MAIZE	1.2e-10	41.43	Cortical cell-delineating protein OS=Zea mays PE=2 SV=1	[more]
LBP65_ARATH	1.9e-08	44.12	Putative lipid-binding protein At4g00165 OS=Arabidopsis thaliana GN=At4g00165 PE...	[more]
ERLL2_ARATH	2.5e-08	35.44	pEARLI1-like lipid transfer protein 2 OS=Arabidopsis thaliana GN=At4g12490 PE=2 ...	[more]
ERLL1_ARATH	3.3e-08	35.00	pEARLI1-like lipid transfer protein 1 OS=Arabidopsis thaliana GN=AZI1 PE=1 SV=1	[more]

BLAST of CU139527 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKK9_CUCSA	1.6e-41	95.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161300 PE=4 SV=1	[more]
A5B2G2_VITVI	7.7e-12	48.65	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0154g00290 PE=4 SV=...	[more]
B9SUW6_RICCO	1.0e-11	49.37	14 kDa proline-rich protein DC2.15, putative OS=Ricinus communis GN=RCOM_0250430...	[more]
M5WB35_PRUPE	2.2e-11	52.70	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013010mg PE=4 SV=1	[more]
H2CT18_9BASI	5.0e-11	45.26	Lipid transfer protein (Fragment) OS=Uromyces hobsonii PE=2 SV=1	[more]

BLAST of CU139527 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195053\|gb\|KGN50230.1\|	1.5e-40	95.45	hypothetical protein Csa_5G161300 [Cucumis sativus]	[more]
gi\|659073537\|ref\|XP_008437114.1\|	1.4e-27	73.03	PREDICTED: 14 kDa proline-rich protein DC2.15-like [Cucumis melo]	[more]
gi\|743872649\|ref\|XP_010906606.1\|	2.0e-13	47.78	PREDICTED: 14 kDa proline-rich protein DC2.15-like [Elaeis guineensis]	[more]
gi\|720026384\|ref\|XP_010264240.1\|	1.1e-11	47.62	PREDICTED: 14 kDa proline-rich protein DC2.15-like [Nelumbo nucifera]	[more]
gi\|470125318\|ref\|XP_004298650.1\|	1.9e-11	44.33	PREDICTED: 14 kDa proline-rich protein DC2.15-like [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store
IPR027923	Hydrophob_seed

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa5G161300	Csa5G161300	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0063161	G0063161	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 32..82 score: 4.13
IPR027923	Hydrophobic seed protein	PFAM	PF14547	Hydrophob_seed	coord: 28..83 score: 1.2
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 27..82 score: 1.2
None	No IPR available	PANTHER	PTHR31731	FAMILY NOT NAMED	coord: 18..83 score: 4.6
None	No IPR available	PANTHER	PTHR31731:SF24	SUBFAMILY NOT NAMED	coord: 18..83 score: 4.6