CU139510 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU139510
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Cytochrome P450
Location	Chr3 : 13104682 .. 13104893 (-)
Sequence length	211

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGGGGATTGCGCAGTAGTTTCGAATCAGCAAAATGAGTCTCTTAGAGCAATTTTAGGGGAAAGGAATTTGTTGGAGCTGATTGGGGAAGATCATAAGCGTGTGAGAAATGCGTTGGTTTCGTTCTTGAAGCCGGATGTTTGAAGGAATATGTGGGCAGAATGGATGAAGAAATCAGATCACATATCCGCATGCATTGGCACTGTAAACAAG

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU139510 vs. TrEMBL
Match: A0A0A0LA02_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G186690 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-15
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2


Query: 2   GDCAVVSNQQNESLRAILGERNLLELIGEDHKRVRNALVSFLKPD 61
           GDCAVVSNQQNESLRAILGERNLLELIGEDHKRVRNALVSFLKP+
Sbjct: 92  GDCAVVSNQQNESLRAILGERNLLELIGEDHKRVRNALVSFLKPE 136

Query: 62   121
           
Sbjct: 152  136

Query: 122  137
           
Sbjct: 212  136

[Close]

BLAST of CU139510 vs. TrEMBL
Match: A0A0A0LA02_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G186690 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.4e-07
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 1


Query: 124 LEAGCLKEYVGRMDEEIRSHIRMHWHCKQ 183
           L+  CLKEYVG+MDEEIRSHIRMHWHCKQ
Sbjct: 133 LKPECLKEYVGKMDEEIRSHIRMHWHCKQ 161

Query: 184  211
           
Sbjct: 193  161

HSP 2 Score: 68.2 bits (165), Expect = 4.6e-09
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 2


Query: 5   DCAVVSNQQNESLRAILGERNLLELIGEDHKRVRNALVSFLKPD 64
           DC+V++NQQ +S++ ILG+R LLEL GEDHKRVR+ALVSFLKPD
Sbjct: 93  DCSVLTNQQPQSVKMILGDRCLLELNGEDHKRVRDALVSFLKPD 136

Query: 65   124
           
Sbjct: 153  136

Query: 125  137
           
Sbjct: 213  136

[Close]

BLAST of CU139510 vs. TrEMBL
Match: M1C0N1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400022224 PE=3 SV=1)

HSP 1 Score: 37.7 bits (86), Expect = 6.7e+00
Identity = 15/29 (51.72%), Postives = 20/29 (68.97%), Query Frame = 1


Query: 124 LEAGCLKEYVGRMDEEIRSHIRMHWHCKQ 183
           L+  CLK YVG+M+EE+R H+   W  KQ
Sbjct: 133 LKPDCLKRYVGKMEEEVRIHLETCWKDKQ 161

Query: 184  211
           
Sbjct: 193  161

HSP 2 Score: 67.4 bits (163), Expect = 7.9e-09
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 2


Query: 5   DCAVVSNQQNESLRAILGERNLLELIGEDHKRVRNALVSFLKPD 64
           DC+V++NQQ +S++ ILG R LLEL GEDHKRVR+ALVSFLKPD
Sbjct: 93  DCSVLTNQQPQSVKMILGNRCLLELNGEDHKRVRDALVSFLKPD 136

Query: 65   124
           
Sbjct: 153  136

Query: 125  137
           
Sbjct: 213  136

[Close]

BLAST of CU139510 vs. TrEMBL
Match: K4CHC6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 40.0 bits (92), Expect = 1.4e+00
Identity = 15/29 (51.72%), Postives = 21/29 (72.41%), Query Frame = 1


Query: 124 LEAGCLKEYVGRMDEEIRSHIRMHWHCKQ 183
           L+  CLK YVG+M+EE+R H+  +W  KQ
Sbjct: 133 LKPDCLKRYVGKMEEEVRIHVETYWKDKQ 161

Query: 184  211
           
Sbjct: 193  161

HSP 2 Score: 65.5 bits (158), Expect = 3.0e-08
Identity = 29/45 (64.44%), Postives = 40/45 (88.89%), Query Frame = 2


Query: 2   GDCAVVSNQQNESLRAILGERNLLELIGEDHKRVRNALVSFLKPD 61
           GD + ++N+Q  S+RAILG+RNLLEL G+DHKRVR++LVSFL+P+
Sbjct: 93  GDSSKIANKQTASIRAILGDRNLLELSGQDHKRVRDSLVSFLRPE 137

Query: 62   121
           
Sbjct: 153  137

Query: 122  137
           
Sbjct: 213  137

[Close]

BLAST of CU139510 vs. TrEMBL
Match: A0A059BMD9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00805 PE=3 SV=1)

HSP 1 Score: 41.6 bits (96), Expect = 4.6e-01
Identity = 15/24 (62.50%), Postives = 20/24 (83.33%), Query Frame = 1


Query: 139 LKEYVGRMDEEIRSHIRMHWHCKQ 198
           LK+YVG+MDEE+R HI +HW  K+
Sbjct: 139 LKQYVGKMDEEVRKHIELHWRGKE 162

Query: 199  211
           
Sbjct: 199  162

HSP 2 Score: 65.1 bits (157), Expect = 3.9e-08
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 2


Query: 5   DCAVVSNQQNESLRAILGERNLLELIGEDHKRVRNALVSFLKPD 64
           D   VSNQQ +S + ILG+RNLLEL+GEDHKRVR ALVSFLKP+
Sbjct: 93  DANTVSNQQAKSNQMILGDRNLLELMGEDHKRVRGALVSFLKPE 136

Query: 65   124
           
Sbjct: 153  136

Query: 125  137
           
Sbjct: 213  136

[Close]

BLAST of CU139510 vs. NCBI nr
Match: gi|449446129|ref|XP_004140824.1| (PREDICTED: cytochrome P450 716B1-like [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 7.3e-16
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 2


Query: 2   GDCAVVSNQQNESLRAILGERNLLELIGEDHKRVRNALVSFLKPD 61
           GDCAVVSNQQNESLRAILGERNLLELIGEDHKRVRNALVSFLKP+
Sbjct: 92  GDCAVVSNQQNESLRAILGERNLLELIGEDHKRVRNALVSFLKPE 136

Query: 62   121
           
Sbjct: 152  136

Query: 122  137
           
Sbjct: 212  136

[Close]

BLAST of CU139510 vs. NCBI nr
Match: gi|659114553|ref|XP_008457111.1| (PREDICTED: cytochrome P450 716B1-like [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 2.8e-15
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 2


Query: 2   GDCAVVSNQQNESLRAILGERNLLELIGEDHKRVRNALVSFLKPD 61
           GDCAVVSNQQNESLRAILGERNLLEL GEDHKRVRNALVSFLKP+
Sbjct: 92  GDCAVVSNQQNESLRAILGERNLLELTGEDHKRVRNALVSFLKPE 136

Query: 62   121
           
Sbjct: 152  136

Query: 122  137
           
Sbjct: 212  136

[Close]

BLAST of CU139510 vs. NCBI nr
Match: gi|971548397|ref|XP_015163674.1| (PREDICTED: taxadiene 5-alpha hydroxylase-like [Solanum tuberosum])

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-09
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 2


Query: 5   DCAVVSNQQNESLRAILGERNLLELIGEDHKRVRNALVSFLKPD 64
           DC+V++NQQ +S++ ILG+R LLEL GEDHKRVR+ALVSFLKPD
Sbjct: 93  DCSVLTNQQPQSVKMILGDRCLLELNGEDHKRVRDALVSFLKPD 136

Query: 65   124
           
Sbjct: 153  136

Query: 125  137
           
Sbjct: 213  136

[Close]

BLAST of CU139510 vs. NCBI nr
Match: gi|460397592|ref|XP_004244351.1| (PREDICTED: taxadiene 5-alpha hydroxylase-like [Solanum lycopersicum])

HSP 1 Score: 68.6 bits (166), Expect = 5.1e-09
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 2


Query: 5   DCAVVSNQQNESLRAILGERNLLELIGEDHKRVRNALVSFLKPD 64
           DC+V++NQQ +S++ ILG R LLEL GEDHKRVR+ALVSFLKPD
Sbjct: 93  DCSVLTNQQPQSVKMILGNRCLLELNGEDHKRVRDALVSFLKPD 136

Query: 65   124
           
Sbjct: 153  136

Query: 125  137
           
Sbjct: 213  136

[Close]

BLAST of CU139510 vs. NCBI nr
Match: gi|970041465|ref|XP_015082132.1| (PREDICTED: cytochrome P450 716B1-like [Solanum pennellii])

HSP 1 Score: 68.6 bits (166), Expect = 5.1e-09
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 2


Query: 5   DCAVVSNQQNESLRAILGERNLLELIGEDHKRVRNALVSFLKPD 64
           DC+V++NQQ +S++ ILG R LLEL GEDHKRVR+ALVSFLKPD
Sbjct: 93  DCSVLTNQQPQSVKMILGNRCLLELNGEDHKRVRDALVSFLKPD 136

Query: 65   124
           
Sbjct: 153  136

Query: 125  137
           
Sbjct: 213  136

The following BLAST results are available for this feature:

BLAST of CU139510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA02_CUCSA	1.1e-15	97.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G186690 PE=3 SV=1	[more]
A0A0A0LA02_CUCSA	7.4e-07	86.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G186690 PE=3 SV=1	[more]
M1C0N1_SOLTU	6.7e+00	51.72	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400022224 PE=3 SV=1	[more]
K4CHC6_SOLLC	1.4e+00	51.72	Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1	[more]
A0A059BMD9_EUCGR	4.6e-01	62.50	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00805 PE=3 SV=1	[more]

BLAST of CU139510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446129\|ref\|XP_004140824.1\|	7.3e-16	97.78	PREDICTED: cytochrome P450 716B1-like [Cucumis sativus]	[more]
gi\|659114553\|ref\|XP_008457111.1\|	2.8e-15	95.56	PREDICTED: cytochrome P450 716B1-like [Cucumis melo]	[more]
gi\|971548397\|ref\|XP_015163674.1\|	3.0e-09	72.73	PREDICTED: taxadiene 5-alpha hydroxylase-like [Solanum tuberosum]	[more]
gi\|460397592\|ref\|XP_004244351.1\|	5.1e-09	72.73	PREDICTED: taxadiene 5-alpha hydroxylase-like [Solanum lycopersicum]	[more]
gi\|970041465\|ref\|XP_015082132.1\|	5.1e-09	72.73	PREDICTED: cytochrome P450 716B1-like [Solanum pennellii]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G186690	Csa3G186690	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0062976	G0062976	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24286	FAMILY NOT NAMED	coord: 3..47 score: 4.5
None	No IPR available	PANTHER	PTHR24286:SF61	SUBFAMILY NOT NAMED	coord: 3..47 score: 4.5