CU138596 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU138596
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionLipoxygenase
LocationChr4 : 11215005 .. 11215247 (+)
Sequence length243
The following sequences are available for this feature:

transcribed_cluster sequence

GGTGGAGGAAAGGAATTAAGTATCGTTTTAAGTTAAACTAAAGAAAAATGCTGAAATCTCATCATGTGTCTTCCCATTCGAGTTTAGAGGCTGCAGCGTTTGTAAACCCAAAGCCATTTCTTTTGAGTAATGCAAAGACGACTTTGCTTCCAATAAGATGGGACGGTGGGAGACAAAATGCAAAGTCTCATCGTCTACGTTTGGCTGGGCGGCCTTCCACCGTTATCAAAGCCAGTACCGTCG
Library categoryESTs
gynoecious flower library1
BLAST of CU138596 vs. TrEMBL
Match: A0A0A0L1W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G288610 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.6e-21
Identity = 56/65 (86.15%), Postives = 56/65 (86.15%), Query Frame = 3

Query: 48  MLKXXXXXXXXXLEAAAFVNPKPFLLSNAKTTLLPIRWDGGRQNAKSHRLRLAGRPSTVI 107
           MLK         LEAAAFVNPKPFLLSNAKTTLLPIRWDGGRQNAKSHRLRLAGRPSTVI
Sbjct: 1   MLKSHHVSSHSSLEAAAFVNPKPFLLSNAKTTLLPIRWDGGRQNAKSHRLRLAGRPSTVI 60

Query: 108 KASTV 167
           KASTV
Sbjct: 61  KASTV 65

Query: 168 227
           
Sbjct: 121 65

Query: 228 243
           
Sbjct: 181 65

BLAST of CU138596 vs. TrEMBL
Match: A0A125S6K7_CUCME (Lipoxygenase OS=Cucumis melo var. makuwa GN=LOX10 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-18
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 3

Query: 48  MLKXXXXXXXXXLEAAAFVNPKPFLLSNAKTTLLPIRWDGGRQNAKSHRLRLAGRPSTVI 107
           MLK         LEAA FVNPK FLLSNAKTTLLP+RW+GGRQNAKSHRLRLAGRP+TVI
Sbjct: 1   MLKSHHVSSNSSLEAAVFVNPKLFLLSNAKTTLLPVRWEGGRQNAKSHRLRLAGRPATVI 60

Query: 108 KASTV 167
           KAS+V
Sbjct: 61  KASSV 65

Query: 168 227
           
Sbjct: 121 65

Query: 228 243
           
Sbjct: 181 65

BLAST of CU138596 vs. NCBI nr
Match: gi|778693116|ref|XP_004142135.2| (PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-21
Identity = 56/65 (86.15%), Postives = 56/65 (86.15%), Query Frame = 3

Query: 48  MLKXXXXXXXXXLEAAAFVNPKPFLLSNAKTTLLPIRWDGGRQNAKSHRLRLAGRPSTVI 107
           MLK         LEAAAFVNPKPFLLSNAKTTLLPIRWDGGRQNAKSHRLRLAGRPSTVI
Sbjct: 1   MLKSHHVSSHSSLEAAAFVNPKPFLLSNAKTTLLPIRWDGGRQNAKSHRLRLAGRPSTVI 60

Query: 108 KASTV 167
           KASTV
Sbjct: 61  KASTV 65

Query: 168 227
           
Sbjct: 121 65

Query: 228 243
           
Sbjct: 181 65

BLAST of CU138596 vs. NCBI nr
Match: gi|700198983|gb|KGN54141.1| (hypothetical protein Csa_4G288610 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-21
Identity = 56/65 (86.15%), Postives = 56/65 (86.15%), Query Frame = 3

Query: 48  MLKXXXXXXXXXLEAAAFVNPKPFLLSNAKTTLLPIRWDGGRQNAKSHRLRLAGRPSTVI 107
           MLK         LEAAAFVNPKPFLLSNAKTTLLPIRWDGGRQNAKSHRLRLAGRPSTVI
Sbjct: 1   MLKSHHVSSHSSLEAAAFVNPKPFLLSNAKTTLLPIRWDGGRQNAKSHRLRLAGRPSTVI 60

Query: 108 KASTV 167
           KASTV
Sbjct: 61  KASTV 65

Query: 168 227
           
Sbjct: 121 65

Query: 228 243
           
Sbjct: 181 65

BLAST of CU138596 vs. NCBI nr
Match: gi|987644663|gb|AME15768.1| (lipoxygenase 10 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-18
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 3

Query: 48  MLKXXXXXXXXXLEAAAFVNPKPFLLSNAKTTLLPIRWDGGRQNAKSHRLRLAGRPSTVI 107
           MLK         LEAA FVNPK FLLSNAKTTLLP+RW+GGRQNAKSHRLRLAGRP+TVI
Sbjct: 1   MLKSHHVSSNSSLEAAVFVNPKLFLLSNAKTTLLPVRWEGGRQNAKSHRLRLAGRPATVI 60

Query: 108 KASTV 167
           KAS+V
Sbjct: 61  KASSV 65

Query: 168 227
           
Sbjct: 121 65

Query: 228 243
           
Sbjct: 181 65

BLAST of CU138596 vs. NCBI nr
Match: gi|659097665|ref|XP_008449747.1| (PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-18
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 3

Query: 48  MLKXXXXXXXXXLEAAAFVNPKPFLLSNAKTTLLPIRWDGGRQNAKSHRLRLAGRPSTVI 107
           MLK         LEAA FVNPK FLLSNAKTTLLP+RW+GGRQNAKSHRLRLAGRP+TVI
Sbjct: 1   MLKSHHVSSNSSLEAAVFVNPKLFLLSNAKTTLLPVRWEGGRQNAKSHRLRLAGRPATVI 60

Query: 108 KASTV 167
           KAS+V
Sbjct: 61  KASSV 65

Query: 168 227
           
Sbjct: 121 65

Query: 228 243
           
Sbjct: 181 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L1W4_CUCSA1.6e-2186.15Uncharacterized protein OS=Cucumis sativus GN=Csa_4G288610 PE=4 SV=1[more]
A0A125S6K7_CUCME1.6e-1876.92Lipoxygenase OS=Cucumis melo var. makuwa GN=LOX10 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
gi|778693116|ref|XP_004142135.2|1.3e-2186.15PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis sativus][more]
gi|700198983|gb|KGN54141.1|1.3e-2186.15hypothetical protein Csa_4G288610 [Cucumis sativus][more]
gi|987644663|gb|AME15768.1|1.4e-1876.92lipoxygenase 10 [Cucumis melo var. makuwa][more]
gi|659097665|ref|XP_008449747.1|1.4e-1876.92PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G288610Csa4G288610gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0051989G0051989EST