CU138336 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU138336
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 13147890 .. 13148155 (-)
Sequence length	260

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GCGGCGGCGGAACGAAAGAATTGAAGTCGCTAAACATTGCATCATCCGCTTCTCCATAGCAGTAAGATCCCGATGTCTCACACGCAAAGAAAGTCTGAACATCGTCGGGAAACAAACACCGCCGCCGTTCGAGCTGCTCCGATGACGACGGCGTCGAAGGACATTCCGCCGCTGAGTTCATCTCCACCATTTCCTTAAACTTGGAGGATTGGAGTAGGAGGCCGAGAGCTGAGGTGGTGGTGGTGGTGGAGGTGGTCGAG

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU138336 vs. TrEMBL
Match: A0A0A0LTX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G275920 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.2e-36
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = -2


Query: 2   ALGLLLQSSKFKEMVEMNSAAECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGE 61
           ALGLLLQSSKFKEM+EMNSAAECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGE
Sbjct: 280 ALGLLLQSSKFKEMMEMNSAAECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGE 339

Query: 62  ADDAMFSDFNSFVPPP 121
           ADDAMFSDFNSFVPPP
Sbjct: 340 ADDAMFSDFNSFVPPP 355

Query: 122  181
           
Sbjct: 400  355

Query: 182  230
           
Sbjct: 460  355

[Close]

BLAST of CU138336 vs. TrEMBL
Match: B9SQW5_RICCO (AP2-type transcription factor OS=Ricinus communis GN=RcWRI2 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.7e-16
Identity = 47/74 (63.51%), Postives = 54/74 (72.97%), Query Frame = -2


Query: 8   ALGLLLQSSKFKEMVEMNSAAECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGE 67
           ALGLLLQSSKFKEM+EM S  +CPSTP+  EQ + R   FP+D+QTFF C  S S  YGE
Sbjct: 252 ALGLLLQSSKFKEMMEMTSMVDCPSTPAELEQPQSR---FPEDIQTFFECPDSSS--YGE 311

Query: 68  ADDAMFSDFNSFVP 127
            DD +F D NSFVP
Sbjct: 312 GDDMIFGDLNSFVP 320

Query: 128  187
           
Sbjct: 372  320

Query: 188  230
           
Sbjct: 432  320

[Close]

BLAST of CU138336 vs. TrEMBL
Match: F6HYM6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g00870 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.2e-16
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = -2


Query: 5   ALGLLLQSSKFKEMVEMNSAAECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGE 64
           ALGLLLQSSKFKEM+EM +AA+  STP  S   E  RC FPDD+QT+F C+ SGS  Y E
Sbjct: 270 ALGLLLQSSKFKEMMEMTTAADHLSTPPES---ELPRCSFPDDIQTYFECQDSGS--YEE 329

Query: 65  ADDAMFSDFNSFVPP 124
            DD +FS+ NSF+PP
Sbjct: 330 GDDVIFSELNSFIPP 339

Query: 125  184
           
Sbjct: 390  339

Query: 185  230
           
Sbjct: 450  339

[Close]

BLAST of CU138336 vs. TrEMBL
Match: A0A067KRL4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04085 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-15
Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = -2


Query: 8   ALGLLLQSSKFKEMVEMNSAAECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGE 67
           ALGLLLQSSKFKEM+EM S  + PSTP+ + Q+E ++C FPDD+QT+F C+   +  YGE
Sbjct: 281 ALGLLLQSSKFKEMMEMTSMTDYPSTPADN-QIEPQQCRFPDDIQTYFDCQDQNT--YGE 340

Query: 68  ADDAMFSDFNSFVP 127
            DD +F D NSFVP
Sbjct: 341 GDDMIFDDLNSFVP 351

Query: 128  187
           
Sbjct: 401  351

Query: 188  230
           
Sbjct: 461  351

[Close]

BLAST of CU138336 vs. TrEMBL
Match: B9HBF5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s19360g PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.9e-15
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = -2


Query: 5   LGLLLQSSKFKEMVEMNSAAECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGEA 64
           LGLLLQSSKFKEM+EM +  +CP  P+SS  LE   C FP+DVQT+F C+ S SY   + 
Sbjct: 229 LGLLLQSSKFKEMMEMTAVTDCP--PTSSSDLELTPCSFPEDVQTYFECQYSSSY-GDQG 288

Query: 65  DDAMFSDFNSFVPP 124
           DD +F D+NSF+PP
Sbjct: 289 DDMIFGDYNSFMPP 299

Query: 125  184
           
Sbjct: 349  299

Query: 185  227
           
Sbjct: 409  299

[Close]

BLAST of CU138336 vs. NCBI nr
Match: gi|778660300|ref|XP_004146716.2| (PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-35
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = -2


Query: 2   ALGLLLQSSKFKEMVEMNSAAECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGE 61
           ALGLLLQSSKFKEM+EMNSAAECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGE
Sbjct: 260 ALGLLLQSSKFKEMMEMNSAAECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGE 319

Query: 62  ADDAMFSDFNSFVPPP 121
           ADDAMFSDFNSFVPPP
Sbjct: 320 ADDAMFSDFNSFVPPP 335

Query: 122  181
           
Sbjct: 380  335

Query: 182  230
           
Sbjct: 440  335

[Close]

BLAST of CU138336 vs. NCBI nr
Match: gi|700210157|gb|KGN65253.1| (hypothetical protein Csa_1G275920 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-35
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = -2


Query: 2   ALGLLLQSSKFKEMVEMNSAAECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGE 61
           ALGLLLQSSKFKEM+EMNSAAECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGE
Sbjct: 280 ALGLLLQSSKFKEMMEMNSAAECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGE 339

Query: 62  ADDAMFSDFNSFVPPP 121
           ADDAMFSDFNSFVPPP
Sbjct: 340 ADDAMFSDFNSFVPPP 355

Query: 122  181
           
Sbjct: 400  355

Query: 182  230
           
Sbjct: 460  355

[Close]

BLAST of CU138336 vs. NCBI nr
Match: gi|659086229|ref|XP_008443823.1| (PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Cucumis melo])

HSP 1 Score: 155.6 bits (392), Expect = 3.9e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = -2


Query: 2   ALGLLLQSSKFKEMVEMNSAAECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGE 61
           ALGLLLQSSKFKEM+EMNSAAECPSTPSSSEQLE+RRCLFPDDVQTFFACETSGSYCYGE
Sbjct: 282 ALGLLLQSSKFKEMMEMNSAAECPSTPSSSEQLEQRRCLFPDDVQTFFACETSGSYCYGE 341

Query: 62  ADDAMFSDFNSFVPPP 121
           ADDAMFSDFNSFVPPP
Sbjct: 342 ADDAMFSDFNSFVPPP 357

Query: 122  181
           
Sbjct: 402  357

Query: 182  230
           
Sbjct: 462  357

[Close]

BLAST of CU138336 vs. NCBI nr
Match: gi|1021311893|ref|NP_001310645.1| (AP2-like ethylene-responsive transcription factor At1g16060 [Ricinus communis])

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 47/74 (63.51%), Postives = 54/74 (72.97%), Query Frame = -2


Query: 8   ALGLLLQSSKFKEMVEMNSAAECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGE 67
           ALGLLLQSSKFKEM+EM S  +CPSTP+  EQ + R   FP+D+QTFF C  S S  YGE
Sbjct: 252 ALGLLLQSSKFKEMMEMTSMVDCPSTPAELEQPQSR---FPEDIQTFFECPDSSS--YGE 311

Query: 68  ADDAMFSDFNSFVP 127
            DD +F D NSFVP
Sbjct: 312 GDDMIFGDLNSFVP 320

Query: 128  187
           
Sbjct: 372  320

Query: 188  230
           
Sbjct: 432  320

[Close]

BLAST of CU138336 vs. NCBI nr
Match: gi|731407846|ref|XP_010656633.1| (PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Vitis vinifera])

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-15
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = -2


Query: 5   ALGLLLQSSKFKEMVEMNSAAECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGE 64
           ALGLLLQSSKFKEM+EM +AA+  STP  S   E  RC FPDD+QT+F C+ SGS  Y E
Sbjct: 273 ALGLLLQSSKFKEMMEMTTAADHLSTPPES---ELPRCSFPDDIQTYFECQDSGS--YEE 332

Query: 65  ADDAMFSDFNSFVPP 124
            DD +FS+ NSF+PP
Sbjct: 333 GDDVIFSELNSFIPP 342

Query: 125  184
           
Sbjct: 393  342

Query: 185  230
           
Sbjct: 453  342

The following BLAST results are available for this feature:

BLAST of CU138336 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTX8_CUCSA	3.2e-36	98.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G275920 PE=4 SV=1	[more]
B9SQW5_RICCO	3.7e-16	63.51	AP2-type transcription factor OS=Ricinus communis GN=RcWRI2 PE=2 SV=1	[more]
F6HYM6_VITVI	8.2e-16	62.67	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g00870 PE=4 SV=...	[more]
A0A067KRL4_JATCU	1.1e-15	59.46	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04085 PE=4 SV=1	[more]
B9HBF5_POPTR	6.9e-15	58.11	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s19360g PE=4 SV=1	[more]

BLAST of CU138336 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778660300\|ref\|XP_004146716.2\|	1.3e-35	98.68	PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Cucumis ...	[more]
gi\|700210157\|gb\|KGN65253.1\|	1.3e-35	98.68	hypothetical protein Csa_1G275920 [Cucumis sativus]	[more]
gi\|659086229\|ref\|XP_008443823.1\|	3.9e-35	97.37	PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Cucumis ...	[more]
gi\|1021311893\|ref\|NP_001310645.1\|	1.2e-15	63.51	AP2-like ethylene-responsive transcription factor At1g16060 [Ricinus communis]	[more]
gi\|731407846\|ref\|XP_010656633.1\|	2.6e-15	62.67	PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Vitis vi...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0007275	multicellular organism development

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G275920	Csa1G275920	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0048710	G0048710	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32467:SF35	SUBFAMILY NOT NAMED	coord: 7..86 score: 7.7