CU137350 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU137350
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionCONSTANS
LocationChr4 : 7615673 .. 7615857 (-)
Sequence length188
The following sequences are available for this feature:

transcribed_cluster sequence

GGGTGGCGGCAATGGATGGGGCGCCGTAATTTGCGAGGCATGTGAGAGATGTCCAGCAGAATTCATCTGCAAAGCAGACGCGGCATCACTATGTGCGGCGTGCGATGCAGAGATCCACTCGGCAAACCCCTTGGCTCGACGGCACCAACGGGTGCCGATCAGCAGGGGTGAGCCATGTTTCGTAGACG
Library categoryESTs
gynoecious flower library1
BLAST of CU137350 vs. Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-08
Identity = 26/44 (59.09%), Postives = 27/44 (61.36%), Query Frame = 2

Query: 29  ICEACERCPAEFICKXXXXXXXXXXXXEIHSANPLARRHQRVPI 88
           +C++CER PA F CK            EIHSANPLARRHQRVPI
Sbjct: 54  VCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPI 97

Query: 89  148
           
Sbjct: 114 97

Query: 149 161
           
Sbjct: 174 97


HSP 2 Score: 31.2 bits (69), Expect = 5.0e+00
Identity = 13/46 (28.26%), Postives = 18/46 (39.13%), Query Frame = 2

Query: 23  AVICEACERCPAEFICKXXXXXXXXXXXXEIHSANPLARRHQRVPI 82
           A  C+ C        C+            ++H+AN LA RH+RV +
Sbjct: 9   AQACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV 54

Query: 83  142
           
Sbjct: 69  54

Query: 143 161
           
Sbjct: 129 54

BLAST of CU137350 vs. Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-08
Identity = 25/44 (56.82%), Postives = 28/44 (63.64%), Query Frame = 2

Query: 29  ICEACERCPAEFICKXXXXXXXXXXXXEIHSANPLARRHQRVPI 88
           +CE+CER PA F+C+            E+HSANPLARRHQRVPI
Sbjct: 62  VCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPI 105

Query: 89  148
           
Sbjct: 122 105

Query: 149 161
           
Sbjct: 182 105

BLAST of CU137350 vs. Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.5e-08
Identity = 25/44 (56.82%), Postives = 27/44 (61.36%), Query Frame = 2

Query: 29  ICEACERCPAEFICKXXXXXXXXXXXXEIHSANPLARRHQRVPI 88
           +C++CE  PA F+CK            EIHSANPLARRHQRVPI
Sbjct: 58  VCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPI 101

Query: 89  148
           
Sbjct: 118 101

Query: 149 161
           
Sbjct: 178 101

BLAST of CU137350 vs. TrEMBL
Match: A0A0A0KY36_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G124910 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.4e-17
Identity = 44/59 (74.58%), Postives = 44/59 (74.58%), Query Frame = 2

Query: 5   GGNGWGAVICEACERCPAEFICKXXXXXXXXXXXXEIHSANPLARRHQRVPISRGEPCF 64
           GGNGWGAVICEACERCPAEFICK            EIHSANPLARRHQRVPISRG   F
Sbjct: 12  GGNGWGAVICEACERCPAEFICKADAASLCAACDAEIHSANPLARRHQRVPISRGGAMF 70

Query: 65  124
           
Sbjct: 72  70

Query: 125 182
           
Sbjct: 132 70

BLAST of CU137350 vs. TrEMBL
Match: A0A0K2SF90_GENTR (Gentian CONSTANS homolog OS=Gentiana triflora GN=GtCO PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-07
Identity = 28/45 (62.22%), Postives = 31/45 (68.89%), Query Frame = 2

Query: 29  ICEACERCPAEFICKXXXXXXXXXXXXEIHSANPLARRHQRVPIS 88
           +CEACER PA F+CK            +IHSANPLARRHQRVPIS
Sbjct: 90  VCEACERAPAAFLCKADAASLCTTCDSDIHSANPLARRHQRVPIS 134

Query: 89  148
           
Sbjct: 150 134

Query: 149 164
           
Sbjct: 210 134

BLAST of CU137350 vs. TrEMBL
Match: B3TZZ7_BETVU (COL1 OS=Beta vulgaris subsp. vulgaris GN=COL1 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.9e-07
Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 2

Query: 29  ICEACERCPAEFICKXXXXXXXXXXXXEIHSANPLARRHQRVPI 88
           +CEACER PA F+CK            EIHSANPLARRHQRVPI
Sbjct: 60  VCEACERAPAAFLCKADAASLCATCDAEIHSANPLARRHQRVPI 103

Query: 89  148
           
Sbjct: 120 103

Query: 149 161
           
Sbjct: 180 103

BLAST of CU137350 vs. TrEMBL
Match: B3TZZ7_BETVU (COL1 OS=Beta vulgaris subsp. vulgaris GN=COL1 PE=4 SV=1)

HSP 1 Score: 35.8 bits (81), Expect = 2.3e+01
Identity = 16/48 (33.33%), Postives = 22/48 (45.83%), Query Frame = 2

Query: 11  NGWGAVICEACERCPAEFICKXXXXXXXXXXXXEIHSANPLARRHQRV 70
           N W A +C+ C   P    C+             IH+AN +A RH+RV
Sbjct: 12  NSW-ARVCDTCRAAPCTVYCRADSAFLCTSCDARIHAANQVASRHERV 58

Query: 71  130
           
Sbjct: 72  58

Query: 131 155
           
Sbjct: 132 58


HSP 2 Score: 62.0 bits (149), Expect = 2.9e-07
Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 2

Query: 29  ICEACERCPAEFICKXXXXXXXXXXXXEIHSANPLARRHQRVPI 88
           +CEACER PA F+CK            EIHSANPLARRHQRVPI
Sbjct: 65  VCEACERAPAAFLCKADAASLCTTCDAEIHSANPLARRHQRVPI 108

Query: 89  148
           
Sbjct: 125 108

Query: 149 161
           
Sbjct: 185 108

BLAST of CU137350 vs. TrEMBL
Match: A0A067JNG6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25634 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.8e-07
Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 2

Query: 29  ICEACERCPAEFICKXXXXXXXXXXXXEIHSANPLARRHQRVPI 88
           +CEACER PA FICK            +IHSANPLARRHQRVPI
Sbjct: 64  VCEACERAPAAFICKADAASLCTACDADIHSANPLARRHQRVPI 107

Query: 89  148
           
Sbjct: 124 107

Query: 149 161
           
Sbjct: 184 107

BLAST of CU137350 vs. NCBI nr
Match: gi|449438975|ref|XP_004137263.1| (PREDICTED: zinc finger protein CONSTANS-LIKE 2-like [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 4.5e-17
Identity = 44/59 (74.58%), Postives = 44/59 (74.58%), Query Frame = 2

Query: 5   GGNGWGAVICEACERCPAEFICKXXXXXXXXXXXXEIHSANPLARRHQRVPISRGEPCF 64
           GGNGWGAVICEACERCPAEFICK            EIHSANPLARRHQRVPISRG   F
Sbjct: 12  GGNGWGAVICEACERCPAEFICKADAASLCAACDAEIHSANPLARRHQRVPISRGGAMF 70

Query: 65  124
           
Sbjct: 72  70

Query: 125 182
           
Sbjct: 132 70

BLAST of CU137350 vs. NCBI nr
Match: gi|659111102|ref|XP_008455579.1| (PREDICTED: zinc finger protein CONSTANS-LIKE 2 [Cucumis melo])

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-15
Identity = 42/60 (70.00%), Postives = 42/60 (70.00%), Query Frame = 2

Query: 2   GGGNGWGAVICEACERCPAEFICKXXXXXXXXXXXXEIHSANPLARRHQRVPISRGEPCF 61
           GGGNGW A ICEACERCPAEFICK            EIHSANPLARRHQRVPIS G   F
Sbjct: 11  GGGNGWAAGICEACERCPAEFICKADAASLCAACDAEIHSANPLARRHQRVPISSGGAMF 70

Query: 62  121
           
Sbjct: 71  70

Query: 122 181
           
Sbjct: 131 70

BLAST of CU137350 vs. NCBI nr
Match: gi|921146433|dbj|BAS25697.1| (gentian CONSTANS homolog [Gentiana triflora])

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-07
Identity = 28/45 (62.22%), Postives = 31/45 (68.89%), Query Frame = 2

Query: 29  ICEACERCPAEFICKXXXXXXXXXXXXEIHSANPLARRHQRVPIS 88
           +CEACER PA F+CK            +IHSANPLARRHQRVPIS
Sbjct: 90  VCEACERAPAAFLCKADAASLCTTCDSDIHSANPLARRHQRVPIS 134

Query: 89  148
           
Sbjct: 150 134

Query: 149 164
           
Sbjct: 210 134

BLAST of CU137350 vs. NCBI nr
Match: gi|1021031429|gb|KZM89214.1| (hypothetical protein DCAR_026289 [Daucus carota subsp. sativus])

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-07
Identity = 31/52 (59.62%), Postives = 33/52 (63.46%), Query Frame = 2

Query: 29  ICEACERCPAEFICKXXXXXXXXXXXXEIHSANPLARRHQRVPISRGEPCFV 88
           ICEACER PA FICK            EIHSANPLA RHQRVP++   PC V
Sbjct: 24  ICEACERAPAAFICKADAASLCANCDAEIHSANPLASRHQRVPVA-PIPCSV 74

Query: 89  148
           
Sbjct: 84  74

Query: 149 185
           
Sbjct: 144 74

BLAST of CU137350 vs. NCBI nr
Match: gi|731316194|ref|XP_010694604.1| (PREDICTED: zinc finger protein CONSTANS-LIKE 2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 62.8 bits (151), Expect = 2.5e-07
Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 2

Query: 29  ICEACERCPAEFICKXXXXXXXXXXXXEIHSANPLARRHQRVPI 88
           +CEACER PA F+CK            EIHSANPLARRHQRVPI
Sbjct: 60  VCEACERAPAAFLCKADAASLCATCDAEIHSANPLARRHQRVPI 103

Query: 89  148
           
Sbjct: 120 103

Query: 149 161
           
Sbjct: 180 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
COL1_ARATH2.2e-0859.09Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1[more]
CONS_ARATH2.2e-0856.82Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1[more]
COL2_ARATH6.5e-0856.82Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KY36_CUCSA5.4e-1774.58Uncharacterized protein OS=Cucumis sativus GN=Csa_4G124910 PE=4 SV=1[more]
A0A0K2SF90_GENTR2.3e-0762.22Gentian CONSTANS homolog OS=Gentiana triflora GN=GtCO PE=2 SV=1[more]
B3TZZ7_BETVU2.9e-0763.64COL1 OS=Beta vulgaris subsp. vulgaris GN=COL1 PE=4 SV=1[more]
B3TZZ7_BETVU2.3e+0133.33COL1 OS=Beta vulgaris subsp. vulgaris GN=COL1 PE=4 SV=1[more]
A0A067JNG6_JATCU3.8e-0763.64Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25634 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449438975|ref|XP_004137263.1|4.5e-1774.58PREDICTED: zinc finger protein CONSTANS-LIKE 2-like [Cucumis sativus][more]
gi|659111102|ref|XP_008455579.1|1.9e-1570.00PREDICTED: zinc finger protein CONSTANS-LIKE 2 [Cucumis melo][more]
gi|921146433|dbj|BAS25697.1|1.5e-0762.22gentian CONSTANS homolog [Gentiana triflora][more]
gi|1021031429|gb|KZM89214.1|1.9e-0759.62hypothetical protein DCAR_026289 [Daucus carota subsp. sativus][more]
gi|731316194|ref|XP_010694604.1|2.5e-0763.64PREDICTED: zinc finger protein CONSTANS-LIKE 2 [Beta vulgaris subsp. vulgaris][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G124910Csa4G124910gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0037158G0037158EST