CU136586 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU136586
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 35415168 .. 35415378 (-)
Sequence length	212

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GTTTTGTAATCTGTTTCCTCAGCTCCCTTGAACAGAGTCTCAATGTTGGCCACTTAAACCATGCACTGTAAACCTTTGCACCTCTCTCTTTAGCACTTTGAGCCATCCAACTCACAGATTGACTCTCATGATCAAACATAGTCAGCAATTTCTTATTAGTATGAAAAGGGTAAGACTCAGATAAGAGCTTAAAAGCCGATCCTCTACTAACT

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU136586 vs. TrEMBL
Match: A0A0A0LIQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G852500 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.1e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = -2


Query: 5   VSRGSAFKLLSESYPFHTNKKLLTMFDHESQSVSWMAQSAKERGAKVYSAWFKWPTLRLC 64
           VSRGSAFKLLSESYPFHTNKKLLTMFDHESQSVSWMAQSAKERGAKVYSAWFKWPTLRLC
Sbjct: 222 VSRGSAFKLLSESYPFHTNKKLLTMFDHESQSVSWMAQSAKERGAKVYSAWFKWPTLRLC 281

Query: 65  SRELRKQIT 124
           SRELRKQIT
Sbjct: 282 SRELRKQIT 290

Query: 125  184
           
Sbjct: 342  290

Query: 185  212
           
Sbjct: 402  290

[Close]

BLAST of CU136586 vs. TrEMBL
Match: W9QJL4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014434 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.0e-29
Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = -2


Query: 5   VSRGSAFKLLSESYPFHTNKKLLTMFDHESQSVSWMAQSAKERGAKVYSAWFKWPTLRLC 64
           VSRGSAFKLL+ESYPF TNKKLLTMFDHESQSVSWMAQSAKE+GAKV SAWFKWPTL+LC
Sbjct: 232 VSRGSAFKLLAESYPFQTNKKLLTMFDHESQSVSWMAQSAKEKGAKVQSAWFKWPTLKLC 291

Query: 65  SRELRKQIT 124
           SRELRKQIT
Sbjct: 292 SRELRKQIT 300

Query: 125  184
           
Sbjct: 352  300

Query: 185  212
           
Sbjct: 412  300

[Close]

BLAST of CU136586 vs. TrEMBL
Match: V7CF34_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G248700g PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 9.0e-29
Identity = 61/69 (88.41%), Postives = 68/69 (98.55%), Query Frame = -2


Query: 5   VSRGSAFKLLSESYPFHTNKKLLTMFDHESQSVSWMAQSAKERGAKVYSAWFKWPTLRLC 64
           VSRGSAFKLL+ESYPFHTNKKLLTMFDHESQSV+WMAQSA+E+GAKVYSAWFKWPTL+LC
Sbjct: 221 VSRGSAFKLLAESYPFHTNKKLLTMFDHESQSVTWMAQSAREKGAKVYSAWFKWPTLKLC 280

Query: 65  SRELRKQIT 124
           S +LRKQI+
Sbjct: 281 STDLRKQIS 289

Query: 125  184
           
Sbjct: 341  289

Query: 185  212
           
Sbjct: 401  289

[Close]

BLAST of CU136586 vs. TrEMBL
Match: A0A059BJ15_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00042 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-28
Identity = 62/69 (89.86%), Postives = 68/69 (98.55%), Query Frame = -2


Query: 5   VSRGSAFKLLSESYPFHTNKKLLTMFDHESQSVSWMAQSAKERGAKVYSAWFKWPTLRLC 64
           VSRGSAFKLL+ESYPF TNKKLLTMFDHESQSV+WMAQSAKE+GAKV+SAWFKWPTL+LC
Sbjct: 225 VSRGSAFKLLAESYPFQTNKKLLTMFDHESQSVNWMAQSAKEKGAKVHSAWFKWPTLKLC 284

Query: 65  SRELRKQIT 124
           SRELRKQI+
Sbjct: 285 SRELRKQIS 293

Query: 125  184
           
Sbjct: 345  293

Query: 185  212
           
Sbjct: 405  293

[Close]

BLAST of CU136586 vs. TrEMBL
Match: A0A067GI29_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002866mg PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.0e-28
Identity = 61/69 (88.41%), Postives = 68/69 (98.55%), Query Frame = -2


Query: 5   VSRGSAFKLLSESYPFHTNKKLLTMFDHESQSVSWMAQSAKERGAKVYSAWFKWPTLRLC 64
           VSRGSAFKLL+ESYPFHTNKKLLTMFD+ESQSV+WMAQSAKE+GAKVYSAWFKWPTL+LC
Sbjct: 223 VSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLC 282

Query: 65  SRELRKQIT 124
           S +LRKQI+
Sbjct: 283 STDLRKQIS 291

Query: 125  184
           
Sbjct: 343  291

Query: 185  212
           
Sbjct: 403  291

[Close]

BLAST of CU136586 vs. NCBI nr
Match: gi|778686434|ref|XP_011652392.1| (PREDICTED: uncharacterized protein LOC101215138 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 9.5e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = -2


Query: 5   VSRGSAFKLLSESYPFHTNKKLLTMFDHESQSVSWMAQSAKERGAKVYSAWFKWPTLRLC 64
           VSRGSAFKLLSESYPFHTNKKLLTMFDHESQSVSWMAQSAKERGAKVYSAWFKWPTLRLC
Sbjct: 222 VSRGSAFKLLSESYPFHTNKKLLTMFDHESQSVSWMAQSAKERGAKVYSAWFKWPTLRLC 281

Query: 65  SRELRKQIT 124
           SRELRKQIT
Sbjct: 282 SRELRKQIT 290

Query: 125  184
           
Sbjct: 342  290

Query: 185  212
           
Sbjct: 402  290

[Close]

BLAST of CU136586 vs. NCBI nr
Match: gi|659109348|ref|XP_008454669.1| (PREDICTED: uncharacterized protein LOC103495022 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 9.5e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = -2


Query: 5   VSRGSAFKLLSESYPFHTNKKLLTMFDHESQSVSWMAQSAKERGAKVYSAWFKWPTLRLC 64
           VSRGSAFKLLSESYPFHTNKKLLTMFDHESQSVSWMAQSAKERGAKVYSAWFKWPTLRLC
Sbjct: 222 VSRGSAFKLLSESYPFHTNKKLLTMFDHESQSVSWMAQSAKERGAKVYSAWFKWPTLRLC 281

Query: 65  SRELRKQIT 124
           SRELRKQIT
Sbjct: 282 SRELRKQIT 290

Query: 125  184
           
Sbjct: 342  290

Query: 185  212
           
Sbjct: 402  290

[Close]

BLAST of CU136586 vs. NCBI nr
Match: gi|1009135042|ref|XP_015884772.1| (PREDICTED: uncharacterized protein LOC107420352 [Ziziphus jujuba])

HSP 1 Score: 135.2 bits (339), Expect = 4.4e-29
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = -2


Query: 5   VSRGSAFKLLSESYPFHTNKKLLTMFDHESQSVSWMAQSAKERGAKVYSAWFKWPTLRLC 64
           VSRGSAFKLL+ESYPF TN+KLLTMFDHESQSV+WMAQSAKE+GAKVYSAWFKWPTL+LC
Sbjct: 224 VSRGSAFKLLAESYPFQTNRKLLTMFDHESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLC 283

Query: 65  SRELRKQIT 124
           SRELRKQIT
Sbjct: 284 SRELRKQIT 292

Query: 125  184
           
Sbjct: 344  292

Query: 185  212
           
Sbjct: 404  292

[Close]

BLAST of CU136586 vs. NCBI nr
Match: gi|703074846|ref|XP_010089924.1| (hypothetical protein L484_014434 [Morus notabilis])

HSP 1 Score: 134.4 bits (337), Expect = 7.6e-29
Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = -2


Query: 5   VSRGSAFKLLSESYPFHTNKKLLTMFDHESQSVSWMAQSAKERGAKVYSAWFKWPTLRLC 64
           VSRGSAFKLL+ESYPF TNKKLLTMFDHESQSVSWMAQSAKE+GAKV SAWFKWPTL+LC
Sbjct: 232 VSRGSAFKLLAESYPFQTNKKLLTMFDHESQSVSWMAQSAKEKGAKVQSAWFKWPTLKLC 291

Query: 65  SRELRKQIT 124
           SRELRKQIT
Sbjct: 292 SRELRKQIT 300

Query: 125  184
           
Sbjct: 352  300

Query: 185  212
           
Sbjct: 412  300

[Close]

BLAST of CU136586 vs. NCBI nr
Match: gi|951008822|ref|XP_014509114.1| (PREDICTED: uncharacterized protein LOC106768453 [Vigna radiata var. radiata])

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-28
Identity = 61/69 (88.41%), Postives = 68/69 (98.55%), Query Frame = -2


Query: 5   VSRGSAFKLLSESYPFHTNKKLLTMFDHESQSVSWMAQSAKERGAKVYSAWFKWPTLRLC 64
           VSRGSAFKLL+ESYPFHTNKKLLTMFDHESQSV+WMAQSA+E+GAKVYSAWFKWPTL+LC
Sbjct: 221 VSRGSAFKLLAESYPFHTNKKLLTMFDHESQSVAWMAQSAREKGAKVYSAWFKWPTLKLC 280

Query: 65  SRELRKQIT 124
           S +LRKQI+
Sbjct: 281 STDLRKQIS 289

Query: 125  184
           
Sbjct: 341  289

Query: 185  212
           
Sbjct: 401  289

The following BLAST results are available for this feature:

BLAST of CU136586 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIQ1_CUCSA	5.1e-32	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G852500 PE=4 SV=1	[more]
W9QJL4_9ROSA	4.0e-29	92.75	Uncharacterized protein OS=Morus notabilis GN=L484_014434 PE=4 SV=1	[more]
V7CF34_PHAVU	9.0e-29	88.41	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G248700g PE=4 SV=1	[more]
A0A059BJ15_EUCGR	1.2e-28	89.86	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00042 PE=4 SV=1	[more]
A0A067GI29_CITSI	2.0e-28	88.41	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002866mg PE=4 SV=1	[more]

BLAST of CU136586 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778686434\|ref\|XP_011652392.1\|	9.5e-32	100.00	PREDICTED: uncharacterized protein LOC101215138 [Cucumis sativus]	[more]
gi\|659109348\|ref\|XP_008454669.1\|	9.5e-32	100.00	PREDICTED: uncharacterized protein LOC103495022 [Cucumis melo]	[more]
gi\|1009135042\|ref\|XP_015884772.1\|	4.4e-29	91.30	PREDICTED: uncharacterized protein LOC107420352 [Ziziphus jujuba]	[more]
gi\|703074846\|ref\|XP_010089924.1\|	7.6e-29	92.75	hypothetical protein L484_014434 [Morus notabilis]	[more]
gi\|951008822\|ref\|XP_014509114.1\|	1.7e-28	88.41	PREDICTED: uncharacterized protein LOC106768453 [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR015421	PyrdxlP-dep_Trfase_major

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G852500	Csa3G852500	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0027298	G0027298	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015421	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	GENE3D	G3DSA:3.40.640.10		coord: 6..71 score: 2.
None	No IPR available	PANTHER	PTHR14237	MOLYBDOPTERIN COFACTOR SULFURASE MOSC	coord: 2..71 score: 3.7
None	No IPR available	PANTHER	PTHR14237:SF31	CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING PROTEIN	coord: 2..71 score: 3.7