CU136238 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU136238
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 4875874 .. 4875978 (+)
Sequence length	104

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TCTGTGATAGCCTTTTTCGCCATCTCACCCAATTCTTTAGCTTTGTTTCTCATCTCCTCTGCTTCTTTTCCTTCCATAACTCTCCTTATTGCCTTCTCCACAGC

Library


Library category	ESTs
gynoecious flower library	1

Homology

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BLAST of CU136238 vs. TrEMBL
Match: A0A0A0K4P5_CUCSA (Glycosyltransferase OS=Cucumis sativus GN=Csa_7G073500 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.0e-09
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = -1


Query: 3   AVEKAIRRVMEGKEAEEMRNKAKELGEMAKKAIT 62
           AVEKAIRRVMEGKEAEEMRNKAKELGEMAKKAIT
Sbjct: 417 AVEKAIRRVMEGKEAEEMRNKAKELGEMAKKAIT 450

Query: 63   105
           
Sbjct: 477  450

[Close]

BLAST of CU136238 vs. NCBI nr
Match: gi|778725056|ref|XP_011658895.1| (PREDICTED: scopoletin glucosyltransferase-like [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-07
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = -1


Query: 3   AVEKAIRRVMEGKEAEEMRNKAKELGEMAKKAIT 62
           AVEKAIRRVMEGKEAEEMRNKAKELGEMAKKAIT
Sbjct: 429 AVEKAIRRVMEGKEAEEMRNKAKELGEMAKKAIT 462

Query: 63   105
           
Sbjct: 489  462

[Close]

BLAST of CU136238 vs. NCBI nr
Match: gi|700188681|gb|KGN43914.1| (hypothetical protein Csa_7G073500 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-07
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = -1


Query: 3   AVEKAIRRVMEGKEAEEMRNKAKELGEMAKKAIT 62
           AVEKAIRRVMEGKEAEEMRNKAKELGEMAKKAIT
Sbjct: 417 AVEKAIRRVMEGKEAEEMRNKAKELGEMAKKAIT 450

Query: 63   105
           
Sbjct: 477  450

[Close]

BLAST of CU136238 vs. NCBI nr
Match: gi|659109950|ref|XP_008454967.1| (PREDICTED: scopoletin glucosyltransferase-like [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-06
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = -1


Query: 3   AVEKAIRRVMEGKEAEEMRNKAKELGEMAKKAIT 62
           AVEKAIRRVMEGKEAEEMRNKAKEL EMAKKAIT
Sbjct: 440 AVEKAIRRVMEGKEAEEMRNKAKELAEMAKKAIT 473

Query: 63   105
           
Sbjct: 500  473

The following BLAST results are available for this feature:

BLAST of CU136238 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4P5_CUCSA	5.0e-09	100.00	Glycosyltransferase OS=Cucumis sativus GN=Csa_7G073500 PE=3 SV=1	[more]

BLAST of CU136238 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778725056\|ref\|XP_011658895.1\|	2.3e-07	100.00	PREDICTED: scopoletin glucosyltransferase-like [Cucumis sativus]	[more]
gi\|700188681\|gb\|KGN43914.1\|	2.3e-07	100.00	hypothetical protein Csa_7G073500 [Cucumis sativus]	[more]
gi\|659109950\|ref\|XP_008454967.1\|	1.1e-06	97.06	PREDICTED: scopoletin glucosyltransferase-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G073500	Csa7G073500	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0022843	G0022843	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 15..34 scor
None	No IPR available	unknown	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase	coord: 2..34 score: 1.3