CU134892 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU134892
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 13742138 .. 13742375 (-)
Sequence length	238

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AAGCTTCTCAAGCAAAGCTAGAGATTTTTTTAATAAAGAAATTGCAGTGTCAAACTCATTCATTGTCTCATACTGCATTGATATCTCTGAATACGCCTCAGCAGCTTCCACAGGAGAAGTTCCTTCTCTCTTGTCGAAAATTCCACTAGCAATCTCCAAACATCTCTTTGCATCAGTAAACTTTTCCTGATTACACAACACTTTTCCCATTGAGAAAAACACAAACCTCCCGAAGTTC

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU134892 vs. TrEMBL
Match: A0A0A0K8P3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G375840 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.7e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = -2


Query: 40  VFFSMGKVLCNQEKFTDAKRCLEIASGIFDKREGTSPVEAAEAYSEISMQYETMNEFDTA 99
           VFFSMGKVLCNQEKFTDAKRCLEIASGIFDKREGTSPVEAAEAYSEISMQYETMNEFDTA
Sbjct: 389 VFFSMGKVLCNQEKFTDAKRCLEIASGIFDKREGTSPVEAAEAYSEISMQYETMNEFDTA 448

Query: 100 I 159
           I
Sbjct: 449 I 449

Query: 160  219
           
Sbjct: 509  449

Query: 220  223
           
Sbjct: 569  449

[Close]

BLAST of CU134892 vs. TrEMBL
Match: A0A061DP32_THECC (Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao GN=TCM_004074 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-19
Identity = 49/61 (80.33%), Postives = 52/61 (85.25%), Query Frame = -2


Query: 40  VFFSMGKVLCNQEKFTDAKRCLEIASGIFDKREGTSPVEAAEAYSEISMQYETMNEFDTA 99
           VF SMGK LCNQEKF DAKRCLEIA GI DK+E  SP+E AEAYSEISMQYETMNEF+ A
Sbjct: 380 VFISMGKALCNQEKFADAKRCLEIACGILDKKETVSPIEVAEAYSEISMQYETMNEFEIA 439

Query: 100 I 159
           I
Sbjct: 440 I 440

Query: 160  219
           
Sbjct: 500  440

Query: 220  223
           
Sbjct: 560  440

[Close]

BLAST of CU134892 vs. TrEMBL
Match: B9T299_RICCO (Kinesin light chain, putative OS=Ricinus communis GN=RCOM_0463540 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.6e-19
Identity = 48/61 (78.69%), Postives = 51/61 (83.61%), Query Frame = -2


Query: 40  VFFSMGKVLCNQEKFTDAKRCLEIASGIFDKREGTSPVEAAEAYSEISMQYETMNEFDTA 99
           VF SM K LCNQEKF D KRCLEIA GI DK+E  SPVE AEAYSEI+MQYETMNEF+TA
Sbjct: 372 VFISMAKALCNQEKFADTKRCLEIACGILDKKEAVSPVEVAEAYSEIAMQYETMNEFETA 431

Query: 100 I 159
           I
Sbjct: 432 I 432

Query: 160  219
           
Sbjct: 492  432

Query: 220  223
           
Sbjct: 552  432

[Close]

BLAST of CU134892 vs. TrEMBL
Match: A0A067K416_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17707 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.3e-19
Identity = 48/61 (78.69%), Postives = 52/61 (85.25%), Query Frame = -2


Query: 40  VFFSMGKVLCNQEKFTDAKRCLEIASGIFDKREGTSPVEAAEAYSEISMQYETMNEFDTA 99
           VF SM K LCNQEKF D+KRCLEIA GI DK+E  SPVE AEAYSEI+MQYETMNEF+TA
Sbjct: 380 VFISMAKALCNQEKFADSKRCLEIACGILDKKETVSPVEVAEAYSEIAMQYETMNEFETA 439

Query: 100 I 159
           I
Sbjct: 440 I 440

Query: 160  219
           
Sbjct: 500  440

Query: 220  223
           
Sbjct: 560  440

[Close]

BLAST of CU134892 vs. TrEMBL
Match: A0A0D2SJW3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G145300 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 9.5e-19
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = -2


Query: 40  VFFSMGKVLCNQEKFTDAKRCLEIASGIFDKREGTSPVEAAEAYSEISMQYETMNEFDTA 99
           VF SMGK LCNQE+F D+KRCLEIA GI DK+E  SP+E AEAYSEISMQYETMNEF+ A
Sbjct: 373 VFISMGKALCNQERFADSKRCLEIACGILDKKETVSPIEVAEAYSEISMQYETMNEFEIA 432

Query: 100 I 159
           I
Sbjct: 433 I 433

Query: 160  219
           
Sbjct: 493  433

Query: 220  223
           
Sbjct: 553  433

[Close]

BLAST of CU134892 vs. NCBI nr
Match: gi|778727436|ref|XP_004148956.2| (PREDICTED: nephrocystin-3 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 6.8e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = -2


Query: 40  VFFSMGKVLCNQEKFTDAKRCLEIASGIFDKREGTSPVEAAEAYSEISMQYETMNEFDTA 99
           VFFSMGKVLCNQEKFTDAKRCLEIASGIFDKREGTSPVEAAEAYSEISMQYETMNEFDTA
Sbjct: 389 VFFSMGKVLCNQEKFTDAKRCLEIASGIFDKREGTSPVEAAEAYSEISMQYETMNEFDTA 448

Query: 100 I 159
           I
Sbjct: 449 I 449

Query: 160  219
           
Sbjct: 509  449

Query: 220  223
           
Sbjct: 569  449

[Close]

BLAST of CU134892 vs. NCBI nr
Match: gi|659100767|ref|XP_008451256.1| (PREDICTED: nephrocystin-3 [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 4.2e-20
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = -2


Query: 40  VFFSMGKVLCNQEKFTDAKRCLEIASGIFDKREGTSPVEAAEAYSEISMQYETMNEFDTA 99
           VF SMGKVLCNQEKFTD KRCLEIA GIFDKRE TSP  AAEAYSEISM YETMN+F+TA
Sbjct: 378 VFTSMGKVLCNQEKFTDGKRCLEIAIGIFDKREETSPAAAAEAYSEISMLYETMNDFETA 437

Query: 100 I 159
           I
Sbjct: 438 I 438

Query: 160  219
           
Sbjct: 498  438

Query: 220  223
           
Sbjct: 558  438

[Close]

BLAST of CU134892 vs. NCBI nr
Match: gi|590715972|ref|XP_007050323.1| (Tetratricopeptide repeat-like superfamily protein [Theobroma cacao])

HSP 1 Score: 102.8 bits (255), Expect = 2.8e-19
Identity = 49/61 (80.33%), Postives = 52/61 (85.25%), Query Frame = -2


Query: 40  VFFSMGKVLCNQEKFTDAKRCLEIASGIFDKREGTSPVEAAEAYSEISMQYETMNEFDTA 99
           VF SMGK LCNQEKF DAKRCLEIA GI DK+E  SP+E AEAYSEISMQYETMNEF+ A
Sbjct: 380 VFISMGKALCNQEKFADAKRCLEIACGILDKKETVSPIEVAEAYSEISMQYETMNEFEIA 439

Query: 100 I 159
           I
Sbjct: 440 I 440

Query: 160  219
           
Sbjct: 500  440

Query: 220  223
           
Sbjct: 560  440

[Close]

BLAST of CU134892 vs. NCBI nr
Match: gi|645260152|ref|XP_008235697.1| (PREDICTED: nephrocystin-3 [Prunus mume])

HSP 1 Score: 101.7 bits (252), Expect = 6.1e-19
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = -2


Query: 40  VFFSMGKVLCNQEKFTDAKRCLEIASGIFDKREGTSPVEAAEAYSEISMQYETMNEFDTA 99
           VF SMGK LCNQEKF DAKRCLEI+ GI DK+E  SPV+ AEAYSEISMQYE+MNEF+TA
Sbjct: 378 VFISMGKALCNQEKFADAKRCLEISCGILDKKETVSPVDVAEAYSEISMQYESMNEFETA 437

Query: 100 I 159
           I
Sbjct: 438 I 438

Query: 160  219
           
Sbjct: 498  438

Query: 220  223
           
Sbjct: 558  438

[Close]

BLAST of CU134892 vs. NCBI nr
Match: gi|255583206|ref|XP_002532368.1| (PREDICTED: uncharacterized protein LOC8277477 [Ricinus communis])

HSP 1 Score: 101.3 bits (251), Expect = 8.0e-19
Identity = 48/61 (78.69%), Postives = 51/61 (83.61%), Query Frame = -2


Query: 40  VFFSMGKVLCNQEKFTDAKRCLEIASGIFDKREGTSPVEAAEAYSEISMQYETMNEFDTA 99
           VF SM K LCNQEKF D KRCLEIA GI DK+E  SPVE AEAYSEI+MQYETMNEF+TA
Sbjct: 372 VFISMAKALCNQEKFADTKRCLEIACGILDKKEAVSPVEVAEAYSEIAMQYETMNEFETA 431

Query: 100 I 159
           I
Sbjct: 432 I 432

Query: 160  219
           
Sbjct: 492  432

Query: 220  223
           
Sbjct: 552  432

The following BLAST results are available for this feature:

BLAST of CU134892 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8P3_CUCSA	4.7e-26	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G375840 PE=4 SV=1	[more]
A0A061DP32_THECC	1.9e-19	80.33	Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao GN=TCM_0040...	[more]
B9T299_RICCO	5.6e-19	78.69	Kinesin light chain, putative OS=Ricinus communis GN=RCOM_0463540 PE=4 SV=1	[more]
A0A067K416_JATCU	7.3e-19	78.69	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17707 PE=4 SV=1	[more]
A0A0D2SJW3_GOSRA	9.5e-19	77.05	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G145300 PE=4 SV=1	[more]

BLAST of CU134892 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778727436\|ref\|XP_004148956.2\|	6.8e-26	100.00	PREDICTED: nephrocystin-3 [Cucumis sativus]	[more]
gi\|659100767\|ref\|XP_008451256.1\|	4.2e-20	85.25	PREDICTED: nephrocystin-3 [Cucumis melo]	[more]
gi\|590715972\|ref\|XP_007050323.1\|	2.8e-19	80.33	Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]	[more]
gi\|645260152\|ref\|XP_008235697.1\|	6.1e-19	78.69	PREDICTED: nephrocystin-3 [Prunus mume]	[more]
gi\|255583206\|ref\|XP_002532368.1\|	8.0e-19	78.69	PREDICTED: uncharacterized protein LOC8277477 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR013026	TPR-contain_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G375840	Csa7G375840	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0006455	G0006455	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 8..79 score: 2.
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 8..76 score: 9.1
IPR013026	Tetratricopeptide repeat-containing domain	PROFILE	PS50293	TPR_REGION	coord: 47..80 score: 8
None	No IPR available	PANTHER	PTHR19959	KINESIN LIGHT CHAIN	coord: 8..78 score: 6.5
None	No IPR available	PANTHER	PTHR19959:SF168	SUBFAMILY NOT NAMED	coord: 8..78 score: 6.5