CU134191 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU134191
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Tetratricopeptide repeat protein 1
Location	Chr1 : 28149781 .. 28150027 (+)
Sequence length	246

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TCATGCTTCTTCCGCTGTTAATTCGACTCCAATTGCTAATGGTGGTGTTGATTTGGATTCTTCTATCTTTTTGAAAAGAGCCCATGAGTTGAAAGAAGAGGGTAATAAAAGGTTCCAGAATAAGGATTATGTTGGTGCTCTTGAGCAGTATGAAAGTGCACTTCGTCTTACCCCTAAAACTCACCCTGATCGAGCTGTGTTTCATAGTAATAGGGCGGCTTGCTTGATGCAAATGAAGCCAATTGA

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU134191 vs. TrEMBL
Match: A0A0A0M0N6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G699630 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.9e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 2


Query: 2   HASSAVNSTPIANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYESALRLTPKT 61
           HASSAVNSTPIANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYESALRLTPKT
Sbjct: 15  HASSAVNSTPIANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYESALRLTPKT 74

Query: 62  HPDRAVFHSNRAACLMQMKPI 121
           HPDRAVFHSNRAACLMQMKPI
Sbjct: 75  HPDRAVFHSNRAACLMQMKPI 95

Query: 122  181
           
Sbjct: 135  95

Query: 182  241
           
Sbjct: 195  95

Query: 242  245
           
Sbjct: 255  95

[Close]

BLAST of CU134191 vs. TrEMBL
Match: W9QM65_9ROSA (Tetratricopeptide repeat protein 1 OS=Morus notabilis GN=L484_013661 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.1e-33
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 2


Query: 20  NSTPIANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYESALRLTPKTHPDRAV 79
           ++TP ANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQY+SALRLTPKTHPDRAV
Sbjct: 22  STTPSANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDSALRLTPKTHPDRAV 81

Query: 80  FHSNRAACLMQMKPI 139
           FHSNRAACLMQMKPI
Sbjct: 82  FHSNRAACLMQMKPI 96

Query: 140  199
           
Sbjct: 142  96

Query: 200  245
           
Sbjct: 202  96

[Close]

BLAST of CU134191 vs. TrEMBL
Match: B9RXE4_RICCO (Heat shock protein 70 (HSP70)-interacting protein, putative OS=Ricinus communis GN=RCOM_0903110 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.5e-32
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 2


Query: 5   ASSAVNSTPIANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYESALRLTPKTH 64
           +SS   +TP ANG VD DSSIFLKRAHELKEEGNKRFQNKDYVGALEQY++ALRLTPKTH
Sbjct: 26  SSSNSTTTPNANGAVDFDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH 85

Query: 65  PDRAVFHSNRAACLMQMKPI 124
           PDRAVFHSNRAACLMQMKPI
Sbjct: 86  PDRAVFHSNRAACLMQMKPI 105

Query: 125  184
           
Sbjct: 146  105

Query: 185  244
           
Sbjct: 206  105

[Close]

BLAST of CU134191 vs. TrEMBL
Match: A0A067GSG8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004055mg PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.3e-31
Identity = 69/79 (87.34%), Postives = 74/79 (93.67%), Query Frame = 2


Query: 8   SSAVNSTPIANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYESALRLTPKTHP 67
           +S  N +  +NGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQY++ALRLTPKTHP
Sbjct: 22  NSNANISTNSNGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTHP 81

Query: 68  DRAVFHSNRAACLMQMKPI 127
           DRAVFHSNRAACLMQMKPI
Sbjct: 82  DRAVFHSNRAACLMQMKPI 100

Query: 128  187
           
Sbjct: 142  100

Query: 188  245
           
Sbjct: 202  100

[Close]

BLAST of CU134191 vs. TrEMBL
Match: A0A067JL16_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21161 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.2e-31
Identity = 71/77 (92.21%), Postives = 72/77 (93.51%), Query Frame = 2


Query: 20  NST--PIANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYESALRLTPKTHPDR 79
           NST  P ANG VD DSSIFLKRAHELKEEGNKRFQNKDYVGALEQY+SALRLTPKTHPDR
Sbjct: 26  NSTTVPNANGAVDFDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDSALRLTPKTHPDR 85

Query: 80  AVFHSNRAACLMQMKPI 139
           AVFHSNRAACLMQMKPI
Sbjct: 86  AVFHSNRAACLMQMKPI 102

Query: 140  199
           
Sbjct: 146  102

Query: 200  245
           
Sbjct: 206  102

[Close]

BLAST of CU134191 vs. NCBI nr
Match: gi|449455373|ref|XP_004145427.1| (PREDICTED: uncharacterized protein LOC101214983 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 3.5e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 2


Query: 2   HASSAVNSTPIANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYESALRLTPKT 61
           HASSAVNSTPIANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYESALRLTPKT
Sbjct: 15  HASSAVNSTPIANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYESALRLTPKT 74

Query: 62  HPDRAVFHSNRAACLMQMKPI 121
           HPDRAVFHSNRAACLMQMKPI
Sbjct: 75  HPDRAVFHSNRAACLMQMKPI 95

Query: 122  181
           
Sbjct: 135  95

Query: 182  241
           
Sbjct: 195  95

Query: 242  245
           
Sbjct: 255  95

[Close]

BLAST of CU134191 vs. NCBI nr
Match: gi|659118187|ref|XP_008458988.1| (PREDICTED: uncharacterized protein LOC103498240 [Cucumis melo])

HSP 1 Score: 165.6 bits (418), Expect = 3.5e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 2


Query: 2   HASSAVNSTPIANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYESALRLTPKT 61
           HASSAVNSTPIANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYESALRLTPKT
Sbjct: 15  HASSAVNSTPIANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYESALRLTPKT 74

Query: 62  HPDRAVFHSNRAACLMQMKPI 121
           HPDRAVFHSNRAACLMQMKPI
Sbjct: 75  HPDRAVFHSNRAACLMQMKPI 95

Query: 122  181
           
Sbjct: 135  95

Query: 182  241
           
Sbjct: 195  95

Query: 242  245
           
Sbjct: 255  95

[Close]

BLAST of CU134191 vs. NCBI nr
Match: gi|703078845|ref|XP_010090999.1| (Tetratricopeptide repeat protein 1 [Morus notabilis])

HSP 1 Score: 148.7 bits (374), Expect = 4.5e-33
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 2


Query: 20  NSTPIANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYESALRLTPKTHPDRAV 79
           ++TP ANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQY+SALRLTPKTHPDRAV
Sbjct: 22  STTPSANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDSALRLTPKTHPDRAV 81

Query: 80  FHSNRAACLMQMKPI 139
           FHSNRAACLMQMKPI
Sbjct: 82  FHSNRAACLMQMKPI 96

Query: 140  199
           
Sbjct: 142  96

Query: 200  245
           
Sbjct: 202  96

[Close]

BLAST of CU134191 vs. NCBI nr
Match: gi|657984063|ref|XP_008384116.1| (PREDICTED: uncharacterized protein LOC103446761 [Malus domestica])

HSP 1 Score: 144.4 bits (363), Expect = 8.5e-32
Identity = 68/75 (90.67%), Postives = 72/75 (96.00%), Query Frame = 2


Query: 20  NSTPIANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYESALRLTPKTHPDRAV 79
           NSTPI NG VDLD+SIFLKRAHELKEEGNKRFQ KDYVGAL+QY+SAL+LTPKTHPDRAV
Sbjct: 21  NSTPIVNGSVDLDNSIFLKRAHELKEEGNKRFQGKDYVGALDQYDSALKLTPKTHPDRAV 80

Query: 80  FHSNRAACLMQMKPI 139
           FHSNRAACLMQMKPI
Sbjct: 81  FHSNRAACLMQMKPI 95

Query: 140  199
           
Sbjct: 141  95

Query: 200  245
           
Sbjct: 201  95

[Close]

BLAST of CU134191 vs. NCBI nr
Match: gi|223542258|gb|EEF43800.1| (heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis])

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 2


Query: 5   ASSAVNSTPIANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYESALRLTPKTH 64
           +SS   +TP ANG VD DSSIFLKRAHELKEEGNKRFQNKDYVGALEQY++ALRLTPKTH
Sbjct: 26  SSSNSTTTPNANGAVDFDSSIFLKRAHELKEEGNKRFQNKDYVGALEQYDNALRLTPKTH 85

Query: 65  PDRAVFHSNRAACLMQMKPI 124
           PDRAVFHSNRAACLMQMKPI
Sbjct: 86  PDRAVFHSNRAACLMQMKPI 105

Query: 125  184
           
Sbjct: 146  105

Query: 185  244
           
Sbjct: 206  105

The following BLAST results are available for this feature:

BLAST of CU134191 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0N6_CUCSA	1.9e-38	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G699630 PE=4 SV=1	[more]
W9QM65_9ROSA	3.1e-33	94.67	Tetratricopeptide repeat protein 1 OS=Morus notabilis GN=L484_013661 PE=4 SV=1	[more]
B9RXE4_RICCO	4.5e-32	87.50	Heat shock protein 70 (HSP70)-interacting protein, putative OS=Ricinus communis ...	[more]
A0A067GSG8_CITSI	1.3e-31	87.34	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004055mg PE=4 SV=1	[more]
A0A067JL16_JATCU	2.2e-31	92.21	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21161 PE=4 SV=1	[more]

BLAST of CU134191 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455373\|ref\|XP_004145427.1\|	3.5e-38	100.00	PREDICTED: uncharacterized protein LOC101214983 [Cucumis sativus]	[more]
gi\|659118187\|ref\|XP_008458988.1\|	3.5e-38	100.00	PREDICTED: uncharacterized protein LOC103498240 [Cucumis melo]	[more]
gi\|703078845\|ref\|XP_010090999.1\|	4.5e-33	94.67	Tetratricopeptide repeat protein 1 [Morus notabilis]	[more]
gi\|657984063\|ref\|XP_008384116.1\|	8.5e-32	90.67	PREDICTED: uncharacterized protein LOC103446761 [Malus domestica]	[more]
gi\|223542258\|gb\|EEF43800.1\|	1.1e-31	87.50	heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR013026	TPR-contain_dom
IPR019734	TPR_repeat

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G699630	Csa1G699630	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02OY690	FKNP3UI02OY690	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 26..80 score: 2.0
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 27..80 score: 2.03
IPR013026	Tetratricopeptide repeat-containing domain	PROFILE	PS50293	TPR_REGION	coord: 28..61 score: 8
IPR019734	Tetratricopeptide repeat	PROFILE	PS50005	TPR	coord: 28..61 score: 8
None	No IPR available	PANTHER	PTHR22904	TPR REPEAT CONTAINING PROTEIN	coord: 23..80 score: 2.1
None	No IPR available	PANTHER	PTHR22904:SF331	CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN	coord: 23..80 score: 2.1